CK933142

Overview
NameCK933142
Unique NameCK933142
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length799
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933142 vs. ExPASy Swiss-Prot
Match: RTNLL_ARATH (Reticulon-like protein B12 OS=Arabidopsis thaliana GN=RTNLB12 PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.090e-43
Identity = 89/192 (46.35%), Postives = 123/192 (64.06%), Query Frame = 3
Query:   93 MGSSSDRLFKRQRTIHEILGGGLAADVILWR*KNVTVGILLVTLAAWVVFERSGYTXXXXXXXXXXXXXXXXXXXXXXXXXXNRPAPPLPELHLSEEMVNEVAALIRTRVNDFLSVSQDMALGKNSRLFFRVALYLWLISFVGGLTDFLTLGYTSLVIVLTLPALYERYEDHIDKYAILGYRKLRQLYVKID 668
            M SSSD+LF R RTIHEILGGG+ ADV+LWR KNV+VGI+ VT+A+W+VFE   YT                          NRP+PPLPE  +SE M  E +  +R  VN  L VS D+A+ ++S L+ +VA+ L+L+S +G L DF TL +TS+++V+T+PA YERYED+I         K R+LY++++
Sbjct:    1 MSSSSDKLFNRDRTIHEILGGGIVADVMLWRKKNVSVGIVTVTIASWMVFEAFAYTIFTLISSVLLLLLSILFLWSKSASILNRPSPPLPEFQISEAMAEEASIWLRIHVNKLLQVSHDIAMARDSELYTKVAVSLFLLSLIGSLMDFQTLCHTSVLVVMTVPAFYERYEDYIVGSIEFICNKTRELYLRLE 192          
BLAST of CK933142 vs. ExPASy Swiss-Prot
Match: RTNLP_ARATH (Reticulon-like protein B16 OS=Arabidopsis thaliana GN=RTNLB16 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 7.961e-35
Identity = 78/215 (36.28%), Postives = 122/215 (56.74%), Query Frame = 3
Query:   75 FSVSSKMGSSSD-RLFKRQRTIHEILGGGLAADVILWR*KNVTVGILLVTLAAWVVFERSGYTXXXXXXXXXXXXXXXXXXXXXXXXXXNRPAPPLPELHLSEEMVNEVAALIRTRVNDFLSVSQDMALGKNSRLFFRVALYLWLISFVGGLTDFLTLGYTSLVIVLTLPALYERYEDHIDKYAILGYRKLRQLYVKIDKEFVSKVRKWILEKQK 716
            F   ++ GSSSD RL  RQ T+H+ +GGG AAD++LWR +++++G+++++  AW++FE SG                            NR    LPEL LSEEMVN  AA  R ++N  L ++ D+ +G + RLFF+V + LWL+S +G      TL Y   ++ +T+PALY +Y+  +DK     +R+L   Y  +D+  +S++  W L K K
Sbjct:   11 FDGRNEGGSSSDYRLLGRQITVHQFMGGGKAADLLLWRRRHLSLGVIIISTVAWLIFEFSGLPFLSVSSDVLLIVIMISFVHARVSAFRNRQLHSLPELVLSEEMVNSAAASFRIKLNHLLVMAHDVTVGNDFRLFFKVVICLWLLSAIGSYISLCTLLYIGTILSVTIPALYSKYQSKVDKCCGTIHRRLSHHYKIVDENVISRL-SWSLSKDK 224          
BLAST of CK933142 vs. ExPASy Swiss-Prot
Match: RTNLD_ARATH (Reticulon-like protein B4 OS=Arabidopsis thaliana GN=RTNLB4 PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.974e-31
Identity = 70/217 (32.26%), Postives = 120/217 (55.30%), Query Frame = 3
Query:   78 SVSSKMGSSSDRLFKRQRTIHEILGGGLAADVILWR*KNVTVGILLVTLAAWVVFERSGYTXXXXXXXXXXXXXXXXXXXXXXXXXXNRPAPPLPELHLSEEMVNEVAALIRTRVNDFLSVSQDMALGKNSRLFFRVALYLWLISFVGGLTDFLTLGYTSLVIVLTLPALYERYEDHIDKYAILGYRKLRQLYVKID----KEFVSKVRKWILEKQK 716
            S SS   S   RLF R++ +H++LGGG  AD+ LWR K V+ G+L    A+WV+FE   Y                           ++  P +PE+H+ E+ + ++ + +R  +N  L++ +++A GK+ + F  V   LW++S +G   +FLTL YT+ V++ T+P LYE+YED +D Y     R++++ Y  +D    ++ +SK+ +  L K+K
Sbjct:   40 SSSSSFKSKIYRLFGREKPVHKVLGGGKPADIFLWRNKKVSGGVLGAVTASWVLFELFEYHLLAFLCHFAIFALAALFLWSNACTFIHKSTPHIPEVHIPEDPILQLVSGLRIEINRGLTLLRNIASGKDVKKFILVIAGLWVLSIIGSCYNFLTLFYTATVLLFTIPVLYEKYEDKVDAYGEKAMREIKKQYAVLDEKVLRKVISKIPRGALNKKK 256          
BLAST of CK933142 vs. ExPASy Swiss-Prot
Match: RTNLA_ARATH (Reticulon-like protein B1 OS=Arabidopsis thaliana GN=RTNLB1 PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.827e-29
Identity = 68/213 (31.92%), Postives = 116/213 (54.46%), Query Frame = 3
Query:   78 SVSSKMGSSSDRLFKRQRTIHEILGGGLAADVILWR*KNVTVGILLVTLAAWVVFERSGYTXXXXXXXXXXXXXXXXXXXXXXXXXXNRPAPPLPELHLSEEMVNEVAALIRTRVNDFLSVSQDMALGKNSRLFFRVALYLWLISFVGGLTDFLTLGYTSLVIVLTLPALYERYEDHIDKYAILGYRKLRQLYVKIDKEFVSKVRKWILEKQK 716
            S SS M S   RLF R++ +H++LGGG  AD+ +W+ K ++ G+L    AAWVVFE   Y                           N+  P +PE+H+ EE + ++A+ +R  +N   S  +++A G++ + F      LW++S +GG  +FLTL Y +LV++ T+P  Y++YED +D        +L++ Y  +D++ +SK+    L+ +K
Sbjct:   61 SPSSSMKSKVYRLFGREQPVHKVLGGGKPADIFMWKNKKMSGGVLGGATAAWVVFELMEYHLLTLLCHVMIVVLAVLFLWSNATMFINKSPPKIPEVHIPEEPILQLASGLRIEINRGFSSLREIASGRDLKKFLIAIAGLWVLSILGGCFNFLTLAYIALVLLFTVPLAYDKYEDKVDPLGEKAMIELKKQYAVLDEKVLSKIPLGPLKNKK 273          
BLAST of CK933142 vs. ExPASy Swiss-Prot
Match: RTNLE_ARATH (Reticulon-like protein B5 OS=Arabidopsis thaliana GN=RTNLB5 PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 6.527e-29
Identity = 67/193 (34.72%), Postives = 107/193 (55.44%), Query Frame = 3
Query:  111 RLFKRQRTIHEILGGGLAADVILWR*KNVTVGILLVTLAAWVVFERSGYTXXXXXXXXXXXXXXXXXXXXXXXXXXNRPAPPLPELHLSEEMVNEVAALIRTRVNDFLSVSQDMALGKNSRLFFRVALYLWLISFVGGLTDFLTLGYTSLVIVLTLPALYERYEDHIDKYAILGYRKLRQLYVKIDKEFVSKV 689
            R+F R++ +H++LGGG  ADV LWR K ++  +L V  A WV+FE   Y                           N+ +P +PE+H+ EE    VA+ +R  +N    + + +ALG++ + F  V + LW+IS VG   +FLTL Y   VI+ T+P LYE++ED +D  A    ++L++ YV  D++ +SK+
Sbjct:   51 RMFGREKPVHKVLGGGKPADVFLWRDKKLSGAVLGVATAIWVLFELVEYHLLSLLCHISILALGGLFLWSNAHTLINKTSPQIPEIHVPEEAFLVVASSLRNELNQAFVILRSIALGRDLKKFLMVVVGLWIISVVGNWFNFLTLVYICFVILHTVPMLYEKHEDKVDPLAEKAMKELQKQYVVFDEKVLSKI 243          
BLAST of CK933142 vs. ExPASy Swiss-Prot
Match: RTNLF_ARATH (Reticulon-like protein B6 OS=Arabidopsis thaliana GN=RTNLB6 PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.454e-28
Identity = 65/193 (33.68%), Postives = 105/193 (54.40%), Query Frame = 3
Query:  111 RLFKRQRTIHEILGGGLAADVILWR*KNVTVGILLVTLAAWVVFERSGYTXXXXXXXXXXXXXXXXXXXXXXXXXXNRPAPPLPELHLSEEMVNEVAALIRTRVNDFLSVSQDMALGKNSRLFFRVALYLWLISFVGGLTDFLTLGYTSLVIVLTLPALYERYEDHIDKYAILGYRKLRQLYVKIDKEFVSKV 689
            RLF R++ +H++LGGGL ADV LWR K ++  +L V  A WV+FE   Y                           N+  P +PE+H+ EE    + + +R  +N    + + +ALG++ + F  V   LW+IS VG   +FLTL Y   V++ T+P LYE++ED +D  A    ++L++ Y+  D++ +SK+
Sbjct:   51 RLFGREKPVHKVLGGGLPADVFLWRDKKLSASVLGVATAIWVLFELVEYHFLSLVCHILIFALAALFLLSNAHAFMNKTPPKIPEIHIKEEHFLMIVSALRNELNQAFVILRSIALGRDLKKFLMVVFGLWIISVVGNWFNFLTLVYICFVVLHTVPMLYEKHEDKVDPVAEKTLKELKKHYMVFDEKVLSKL 243          
BLAST of CK933142 vs. ExPASy Swiss-Prot
Match: RTNLB_ARATH (Reticulon-like protein B2 OS=Arabidopsis thaliana GN=RTNLB2 PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 9.426e-28
Identity = 61/202 (30.20%), Postives = 109/202 (53.96%), Query Frame = 3
Query:  111 RLFKRQRTIHEILGGGLAADVILWR*KNVTVGILLVTLAAWVVFERSGYTXXXXXXXXXXXXXXXXXXXXXXXXXXNRPAPPLPELHLSEEMVNEVAALIRTRVNDFLSVSQDMALGKNSRLFFRVALYLWLISFVGGLTDFLTLGYTSLVIVLTLPALYERYEDHIDKYAILGYRKLRQLYVKIDKEFVSKVRKWILEKQK 716
            RLF R+R +H++LGGG  AD+ +W+ K ++ G+      AWV+FE   Y                           ++  P +PE+H+ EE + ++A+ +R  +N  +S  +++A G++ + F      LW++S +GG   FLTL Y +LV++ T+P  Y++YED +D Y      +L++ Y  +D +  SK+ +  L+ +K
Sbjct:   68 RLFGRERPVHKVLGGGKPADIFMWKDKKMSGGVFGGATVAWVLFELMEYHLLTLLCHVMIVALAVLFLWSNATMFIHKSPPKIPEVHIPEEPLLQLASGLRIEINRGISSLREIASGRDIKKFLSAIAGLWVLSILGGCYSFLTLAYIALVLLFTVPLFYDKYEDKVDSYGEKAMAELKKQYAVLDAKVFSKIPRGPLKDKK 269          
BLAST of CK933142 vs. ExPASy Swiss-Prot
Match: RTNLC_ARATH (Reticulon-like protein B3 OS=Arabidopsis thaliana GN=RTNLB3 PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.231e-27
Identity = 63/202 (31.19%), Postives = 112/202 (55.45%), Query Frame = 3
Query:   84 SSKMGSSSDRLFKRQRTIHEILGGGLAADVILWR*KNVTVGILLVTLAAWVVFERSGYTXXXXXXXXXXXXXXXXXXXXXXXXXXNRPAPPLPELHLSEEMVNEVAALIRTRVNDFLSVSQDMALGKNSRLFFRVALYLWLISFVGGLTDFLTLGYTSLVIVLTLPALYERYEDHIDKYAILGYRKLRQLYVKIDKEFVSKV 689
            S+ + +   RLF R++ +H++ GGG  AD+ LWR K V+ G+L     +W++FE   Y                           ++    +PE+H+ E++V ++A+ +R  +N   +V +D+A G++ + F  V   LW++S VG   +FLTL Y + V++ T+P LYE+YED +D +     R++++ YV+ D + +SKV
Sbjct:   38 SASLKTKIYRLFGREQPLHKLFGGGKPADIFLWRNKKVSGGVLGAATVSWILFELLEYNLLTLFGHISILALAVLFLWSSASTFIHKSPLHIPEVHIPEDVVLQLASGLRIEINRGFTVLRDIASGRDLKKFLLVIAGLWVLSKVGSSCNFLTLIYIATVLLFTIPVLYEKYEDKVDDFGEKAMREIKKQYVEFDVKVLSKV 239          
BLAST of CK933142 vs. ExPASy Swiss-Prot
Match: RTNLJ_ARATH (Reticulon-like protein B10 OS=Arabidopsis thaliana GN=RTNLB10 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.100e-27
Identity = 67/190 (35.26%), Postives = 106/190 (55.79%), Query Frame = 3
Query:  126 QRTIHEILGGGLAADVILWR*KNVTVGILLV--TLAAWVVFERSGYTXXXXXXXXXXXXXXXXXXXXXXXXXXNRPAPPLPELHLSEEMVNEVAALIRTRVNDFLSVSQDMALGKNSRLFFRVALYLWLISFVGGLTDFLTLGYTSLVIVLTLPALYERYEDHIDKYAILGYRKLRQLYVKIDKEFVSKV 689
            + ++H+ +  G  AD+I+W  KN   G LL+  T   W +FE+ GY+                          NRP P LP L ++EE V  VA  IR  +N  L+V++++ +G+N++  FRV++ LW +SFVG   +FLT+ Y  +V+ L +P LYERY+D ID+   L +R ++  Y KID+  + K+
Sbjct:    2 EESVHQSIRFGSVADLIMW--KNRRGGFLLLGSTTLLWFLFEKCGYSFFPFVVNTQLLSVVILFLWAKSAILFNRPMPQLPNLEITEEFVFMVADAIRVWINTVLAVAREIYVGRNAKQLFRVSVVLWTVSFVGNFLNFLTILYLGVVLSLLIPFLYERYQDLIDEKLSLTHRVIQTQYRKIDERLLQKI 189          
BLAST of CK933142 vs. ExPASy Swiss-Prot
Match: RTNLH_ARATH (Reticulon-like protein B8 OS=Arabidopsis thaliana GN=RTNLB8 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.567e-25
Identity = 66/205 (32.20%), Postives = 96/205 (46.83%), Query Frame = 3
Query:   75 FSVSSKMGSSSDRLFKRQRTIHEILGGGLAADVILWR*KNVTVGILLVTLAAWVVFERSGYTXXXXXXXXXXXXXXXXXXXXXXXXXXNRPAPPLPELHLSEEMVNEVAALIRTRVNDFLSVSQDMALGKNSRLFFRVALYLWLISFVGGLTDFLTLGYTSLVIVLTLPALYERYEDHIDKYAILGYRKLRQLYVKIDKEFVSKV 689
            F     + S  +RLF RQ+ IH +LGGG +ADV+LWR K ++  +L+   A WV+FE   +                           NR    +P L L ++   EV   +   VN  L   QD+A   N + F    + LW+ + VG   +FLT+ Y   V   T+P LYERYED +D +      K    Y K+D  F+S++
Sbjct:   32 FEQEDSVSSRFNRLFDRQKPIHHVLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWINFHFLSLVCYALLLGMIAQFVWSNASGFLNRSQSRVPRLVLPKDFFAEVGVAVGKEVNRGLLFLQDLACKGNLKQFLMAVIGLWVAAMVGSCCNFLTVLYIGFVGAHTMPVLYERYEDEVDGFMDSMIMKFHSHYKKLDTGFLSRI 236          
The following BLAST results are available for this feature:
BLAST of CK933142 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
RTNLL_ARATH2.090e-4346.35Reticulon-like protein B12 OS=Arabidopsis thaliana... [more]
RTNLP_ARATH7.961e-3536.28Reticulon-like protein B16 OS=Arabidopsis thaliana... [more]
RTNLD_ARATH6.974e-3132.26Reticulon-like protein B4 OS=Arabidopsis thaliana ... [more]
RTNLA_ARATH3.827e-2931.92Reticulon-like protein B1 OS=Arabidopsis thaliana ... [more]
RTNLE_ARATH6.527e-2934.72Reticulon-like protein B5 OS=Arabidopsis thaliana ... [more]
RTNLF_ARATH1.454e-2833.68Reticulon-like protein B6 OS=Arabidopsis thaliana ... [more]
RTNLB_ARATH9.426e-2830.20Reticulon-like protein B2 OS=Arabidopsis thaliana ... [more]
RTNLC_ARATH1.231e-2731.19Reticulon-like protein B3 OS=Arabidopsis thaliana ... [more]
RTNLJ_ARATH2.100e-2735.26Reticulon-like protein B10 OS=Arabidopsis thaliana... [more]
RTNLH_ARATH2.567e-2532.20Reticulon-like protein B8 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004347_C01 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IF_C01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933142 ID=CK933142; Name=CK933142; organism=Citrus sinensis; type=EST; length=799bp
AGGGCTTTTCTAAGACATCATCAAAACTACCTGTTACAGGGGTTTTAGAG
ATCTGGTCTGGATTCAAGATTCTGTTTTCGGTATCTTCTAAAATGGGTTC
ATCTTCCGATCGATTGTTTAAAAGACAAAGAACTATTCATGAAATCCTCG
GAGGAGGTCTTGCTGCAGATGTGATTCTTTGGAGGTAAAAAAATGTAACT
GTGGGAATATTGTTGGTAACATTAGCTGCTTGGGTGGTGTTTGAGAGATC
GGGTTACACTTTGTTGTCGCTTGTCTCTAGTGTTCTACTACTCCTCATTG
CCATTTTGTTCCTTTGGGCCAAAGCTGCTGCAATTCTTAATCGGCCTGCA
CCACCCCTGCCAGAGTTGCATCTATCAGAAGAAATGGTAAATGAAGTTGC
AGCTTTGATTCGCACTCGTGTAAATGATTTCCTCTCAGTTTCTCAGGACA
TGGCCCTGGGCAAGAACTCGAGATTGTTCTTCAGAGTAGCTCTATACTTG
TGGCTGATCTCCTTTGTTGGTGGCTTGACAGACTTTCTTACATTAGGCTA
CACCAGCCTTGTTATTGTTCTGACACTTCCAGCCTTATATGAGAGATACG
AAGATCATATTGATAAATATGCAATATTGGGCTACCGGAAACTTCGGCAG
CTGTATGTGAAAATTGACAAGGAATTTGTCAGCAAAGTCCGGAAATGGAT
TTTGGAAAAGCAGAAACTAAGTTAATTCCTCTCTTTTTCTTCATGATTTT
CTGATATTTTGTTTTTATTTTCGGAGAAGCTGGGGTGGGGAGTGGGCGT
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