CK933145

Overview
NameCK933145
Unique NameCK933145
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length608
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK933145_ssr142 microsatellite CK933145_ssr142:142..151. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5491 contig Csv1_Contig5491:78..685. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933145 vs. ExPASy Swiss-Prot
Match: RPB11_ARATH (DNA-directed RNA polymerase II subunit RPB11 OS=Arabidopsis thaliana GN=RPB13.6 PE=2 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.052e-53
Identity = 101/116 (87.07%), Postives = 111/116 (95.69%), Query Frame = 2
Query:   38 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFEAELAKHSRVY 385
            MNAP+RYERFVVPEGTKKVSY+RDTKIINAASFT+ERE+HTIGNI+RMQLHRDENVLFAGY+LPHPL+YKIIVRIHTTSQSSPMQAYNQAINDLDKELD LK+ FEAE+AK S  +
Sbjct:    1 MNAPERYERFVVPEGTKKVSYDRDTKIINAASFTVEREDHTIGNIVRMQLHRDENVLFAGYQLPHPLKYKIIVRIHTTSQSSPMQAYNQAINDLDKELDYLKNQFEAEVAKFSNQF 116          
BLAST of CK933145 vs. ExPASy Swiss-Prot
Match: RPB11_DICDI (DNA-directed RNA polymerase II subunit rpb11 OS=Dictyostelium discoideum GN=polr2j PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 9.918e-28
Identity = 53/115 (46.09%), Postives = 87/115 (75.65%), Query Frame = 2
Query:   38 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFEAELAKHSRV 382
            MNAPDR+E FV+P+G KKV+  RDTKI NA+ FTI +E+HTIGN++RMQL  D++++FAGY++PHPL++ + +RI T + ++P++   +++  L +E  +L+++F  ++ K   V
Sbjct:    1 MNAPDRFELFVLPDGAKKVTMVRDTKIPNASMFTILKEDHTIGNLIRMQLIADQDIIFAGYRMPHPLEHNVNIRIQTNNNTNPLECVQKSMECLSREFTSLENSFIEQVQKKRNV 115          
BLAST of CK933145 vs. ExPASy Swiss-Prot
Match: RPB11_MOUSE (DNA-directed RNA polymerase II subunit RPB11 OS=Mus musculus GN=Polr2j PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.769e-27
Identity = 55/109 (50.46%), Postives = 77/109 (70.64%), Query Frame = 2
Query:   38 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFEAEL 364
            MNAP  +E F++ EG KK++  +DTK+ NA  FTI +E+HT+GNI++ QL +D  VLFAGYK+PHPL++KII+R+ TT   SP +A+  AI DL  EL  L+  F   +
Sbjct:    1 MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRGAI 109          
BLAST of CK933145 vs. ExPASy Swiss-Prot
Match: RPB11_HUMAN (DNA-directed RNA polymerase II subunit RPB11-a OS=Homo sapiens GN=POLR2J PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.769e-27
Identity = 55/109 (50.46%), Postives = 77/109 (70.64%), Query Frame = 2
Query:   38 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFEAEL 364
            MNAP  +E F++ EG KK++  +DTK+ NA  FTI +E+HT+GNI++ QL +D  VLFAGYK+PHPL++KII+R+ TT   SP +A+  AI DL  EL  L+  F   +
Sbjct:    1 MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAI 109          
BLAST of CK933145 vs. ExPASy Swiss-Prot
Match: RPB11_BOVIN (DNA-directed RNA polymerase II subunit RPB11 OS=Bos taurus GN=POLR2J PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.769e-27
Identity = 55/109 (50.46%), Postives = 77/109 (70.64%), Query Frame = 2
Query:   38 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFEAEL 364
            MNAP  +E F++ EG KK++  +DTK+ NA  FTI +E+HT+GNI++ QL +D  VLFAGYK+PHPL++KII+R+ TT   SP +A+  AI DL  EL  L+  F   +
Sbjct:    1 MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAI 109          
BLAST of CK933145 vs. ExPASy Swiss-Prot
Match: RPB11_DROME (DNA-directed RNA polymerase II subunit RPB11 OS=Drosophila melanogaster GN=Rpb11 PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 4.922e-27
Identity = 56/106 (52.83%), Postives = 77/106 (72.64%), Query Frame = 2
Query:   38 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 355
            MNAP  +E F++ EG KK+  E DTK+ NAA FTI +E+HT+GN++R QL +D NVLFAGYK+PHPL++K ++RI TT+  SP +A+  AI DL  EL   +  F+
Sbjct:    1 MNAPPTFESFLLYEGEKKIIKELDTKVTNAAIFTINKEDHTLGNMIRNQLLKDPNVLFAGYKVPHPLEHKFVIRIQTTADYSPQEAFMNAITDLLAELSLFEERFK 106          
BLAST of CK933145 vs. ExPASy Swiss-Prot
Match: RPB11_ANOGA (DNA-directed RNA polymerase II subunit RPB11 OS=Anopheles gambiae GN=Rpb11 PE=3 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 1.871e-26
Identity = 56/105 (53.33%), Postives = 76/105 (72.38%), Query Frame = 2
Query:   38 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 352
            MNAP  +E F++ EG KK+  E D K+ NAA FT+ +E+HT+GN++R QL +D NVLFAGYKLPHPL++K ++RI TTS+ SP +A+  AI DL  EL   +  F
Sbjct:    1 MNAPPTFESFLLYEGEKKIIKELDMKVPNAAIFTVNKEDHTLGNMIRNQLLKDPNVLFAGYKLPHPLEHKFVLRIQTTSEYSPHEAFMNAITDLLSELSLFEERF 105          
BLAST of CK933145 vs. ExPASy Swiss-Prot
Match: RPB1B_HUMAN (DNA-directed RNA polymerase II subunit RPB11-b1 OS=Homo sapiens GN=POLR2J2 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.701e-25
Identity = 54/105 (51.43%), Postives = 76/105 (72.38%), Query Frame = 2
Query:   38 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 352
            MNAP  +E F++ EG +K++  +DTK+ NA  FTI +E+HT+GNI++ QL +D  VLFAGYK+PHPL++KII+R+ TT   SP +A+  AI DL  EL  L+  F
Sbjct:    1 MNAPPAFESFLLFEG-EKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 104          
BLAST of CK933145 vs. ExPASy Swiss-Prot
Match: RPB1C_HUMAN (DNA-directed RNA polymerase II subunit RPB11-b2 OS=Homo sapiens GN=POLR2J3 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.017e-25
Identity = 53/105 (50.48%), Postives = 76/105 (72.38%), Query Frame = 2
Query:   38 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 352
            MNAP  +E F++ EG +K++  +DTK+ NA  FT+ +E+HT+GNI++ QL +D  VLFAGYK+PHPL++KII+R+ TT   SP +A+  AI DL  EL  L+  F
Sbjct:    1 MNAPPAFESFLLFEG-EKITINKDTKVPNACLFTMNKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 104          
BLAST of CK933145 vs. ExPASy Swiss-Prot
Match: RPB11_CAEBR (Probable DNA-directed RNA polymerase II subunit RPB11 OS=Caenorhabditis briggsae GN=CBG20834 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.482e-23
Identity = 53/111 (47.75%), Postives = 79/111 (71.17%), Query Frame = 2
Query:   38 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFEAELAK 370
            MNAP  +E F++ +  KK+  E+DTK+ NAA FTI +E+HT+GN+L++QL +D  VLFAGYK PHPL++KI++R+ TT+ ++P  A   AI DL  EL  L+   ++ + K
Sbjct:    1 MNAPAAFESFLLLDD-KKIYIEKDTKVPNAAIFTINKEDHTLGNMLKIQLLKDPEVLFAGYKNPHPLEHKILLRVQTTNATTPADALTTAITDLVGELSLLEHRIDSAIKK 110          
The following BLAST results are available for this feature:
BLAST of CK933145 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
RPB11_ARATH1.052e-5387.07DNA-directed RNA polymerase II subunit RPB11 OS=Ar... [more]
RPB11_DICDI9.918e-2846.09DNA-directed RNA polymerase II subunit rpb11 OS=Di... [more]
RPB11_MOUSE3.769e-2750.46DNA-directed RNA polymerase II subunit RPB11 OS=Mu... [more]
RPB11_HUMAN3.769e-2750.46DNA-directed RNA polymerase II subunit RPB11-a OS=... [more]
RPB11_BOVIN3.769e-2750.46DNA-directed RNA polymerase II subunit RPB11 OS=Bo... [more]
RPB11_DROME4.922e-2752.83DNA-directed RNA polymerase II subunit RPB11 OS=Dr... [more]
RPB11_ANOGA1.871e-2653.33DNA-directed RNA polymerase II subunit RPB11 OS=An... [more]
RPB1B_HUMAN2.701e-2551.43DNA-directed RNA polymerase II subunit RPB11-b1 OS... [more]
RPB1C_HUMAN6.017e-2550.48DNA-directed RNA polymerase II subunit RPB11-b2 OS... [more]
RPB11_CAEBR1.482e-2347.75Probable DNA-directed RNA polymerase II subunit RP... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004347_A07 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IF_A07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933145 ID=CK933145; Name=CK933145; organism=Citrus sinensis; type=EST; length=608bp
GGGGCGTAGATAGTGAAGAGAGGGAAGAAGGCAAGCCATGAATGCTCCCG
ACCGTTACGAACGATTTGTCGTCCCCGAAGGCACCAAAAAGGTTTCGTAC
GAGAGAGACACGAAGATTATAAATGCGGCGTCGTTCACTATAGAGAGAGA
GGAGCATACAATCGGCAATATTCTTCGCATGCAATTGCATAGGGATGAAA
ACGTTTTGTTCGCTGGTTACAAGCTCCCTCACCCTCTTCAGTACAAAATA
ATTGTTAGGATTCACACAACTAGTCAGTCTTCACCAATGCAGGCGTATAA
CCAGGCCATCAACGATCTAGATAAGGAACTTGACACTCTGAAAAGTGCAT
TTGAGGCTGAGTTGGCGAAGCATTCGAGAGTTTATTAAAATACCTATGAG
GAAGCAGTTTGTGTTGTCAGATGGGCGGTCTCTTTTGCTGGTCGGAAGGA
AGAGAAATTTTCAAACATTTGCTTTGATCGGATGATTGTAATGAATTAAT
GACTTTACAAAAGAAGGAATGACATAATGAATGTGAATATTTATTTTGTC
TAATAGATGTTTTAATTGTGGCACTCGTCAAAAAAAAAAAAAAAAAAAAA
AAAAAAAA
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