CK933146

Overview
NameCK933146
Unique NameCK933146
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length806
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1535 contig Csv1_Contig1535:1..806. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_SYNY3 (Lysyl-tRNA synthetase OS=Synechocystis sp. (strain PCC 6803) GN=lysS PE=3 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 5.227e-58
Identity = 113/204 (55.39%), Postives = 146/204 (71.57%), Query Frame = 1
Query:  211 EAVRALRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERL------LSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            E +RA R++K E+LR  GL PYAY W+ TH A  LQE YR L+NGEE + +   V+           GKLAF TL+D+SGTIQLY EK+RL      L + F+ LK   D+GDILGV+G++KRTEKGELSV V ++ +LTKSLLPLPDK+HGLTD +KRYRQRYVD++  P V   FR+RA+I + IR+ ++  GF+E+ETPVL
Sbjct:   11 EEIRATRLEKAEQLRQLGLNPYAYTWEITHQAQDLQETYRDLSNGEEVDLK---VAIAGRILARRVMGKLAFFTLQDESGTIQLYLEKQRLTEHMPELENAFNLLKKITDVGDILGVTGTLKRTEKGELSVYVQTYAVLTKSLLPLPDKWHGLTDTEKRYRQRYVDLIVNPTVRQTFRRRAQITAAIRRYLDKQGFIEIETPVL 211          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_THEEB (Lysyl-tRNA synthetase OS=Thermosynechococcus elongatus (strain BP-1) GN=lysS PE=3 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.594e-57
Identity = 112/200 (56.00%), Postives = 144/200 (72.00%), Query Frame = 1
Query:  217 VRALRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSDQ----FDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            +RA RI+K + L+++G+ PYAY+W+RTH+A  LQ+ Y HLA GE   +  D VS          FGKLAF TL+DDSGTIQLY +K+ +        F  LK   D+GDILG  G++KRTEKGELSV+V S+ +LTKSLLPLPDK+HGLTDV+KRYRQRYVD++  P+V D FRKRA I + IR+ +   GF+E+ETPVL
Sbjct:   11 IRATRIEKAKTLQAQGMSPYAYRWERTHTAALLQDKYAHLAAGE---AVGDRVSVAGRIMARRIFGKLAFFTLQDDSGTIQLYLDKQTISQTMGEAAFADLKHLTDVGDILGAVGTLKRTEKGELSVVVESYTMLTKSLLPLPDKWHGLTDVEKRYRQRYVDLIVNPQVRDTFRKRALITAAIRRYLNEQGFIEIETPVL 207          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_SYNP6 (Lysyl-tRNA synthetase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=lysS PE=3 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.287e-56
Identity = 113/203 (55.67%), Postives = 143/203 (70.44%), Query Frame = 1
Query:  217 VRALRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLL-------SDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            +RA R++K  +LR  G EPYAY+WD +HSA QLQ +Y  L  GEE   E   V+          FGKLAF TL+D+SG IQLY EK+RL        ++ F  LK   D+GDILGV GS++RTEKGELS+ V+ + ILTKSL PLPDK+HGLTDV+KRYRQRYVD++  PEV + FR+RAKI + IR+ +E  GF+E+ETPVL
Sbjct:    4 LRATRLEKALQLRELGFEPYAYRWDCSHSAAQLQALYADLPAGEEVAVE---VAIAGRIMARRVFGKLAFFTLQDESGQIQLYLEKQRLSESMAAIDAEAFSHLKALTDVGDILGVKGSVRRTEKGELSIAVDQYAILTKSLQPLPDKWHGLTDVEKRYRQRYVDLIVNPEVRETFRRRAKITAAIRRHLEDQGFIEIETPVL 203          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_SYNE7 (Lysyl-tRNA synthetase OS=Synechococcus elongatus (strain PCC 7942) GN=lysS PE=3 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.287e-56
Identity = 113/203 (55.67%), Postives = 143/203 (70.44%), Query Frame = 1
Query:  217 VRALRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLL-------SDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            +RA R++K  +LR  G EPYAY+WD +HSA QLQ +Y  L  GEE   E   V+          FGKLAF TL+D+SG IQLY EK+RL        ++ F  LK   D+GDILGV GS++RTEKGELS+ V+ + ILTKSL PLPDK+HGLTDV+KRYRQRYVD++  PEV + FR+RAKI + IR+ +E  GF+E+ETPVL
Sbjct:    4 LRATRLEKALQLRELGFEPYAYRWDCSHSAAQLQALYADLPAGEEVAVE---VAIAGRIMARRVFGKLAFFTLQDESGQIQLYLEKQRLSESMAAIDAEAFSHLKALTDVGDILGVKGSVRRTEKGELSIAVDQYAILTKSLQPLPDKWHGLTDVEKRYRQRYVDLIVNPEVRETFRRRAKITAAIRRHLEDQGFIEIETPVL 203          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_NOSP7 (Lysyl-tRNA synthetase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=lysS PE=3 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 6.389e-56
Identity = 113/205 (55.12%), Postives = 144/205 (70.24%), Query Frame = 1
Query:  211 EAVRALRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLL-------SDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            E +RA R++KVE+L+  G  PYAY+W+ TH A QLQE +  LA+GEE + E   V+          FGKLAF TL+D++GTIQLY +K R+        +D F+ LK   D GDILGV G++KRTEKGELSV V  + ILTKSLLPLPDK+HGLTDV KRYRQRYVD++  PEV   FR+RA+I + IR+ +E   F+E+ETPVL
Sbjct:    4 EDIRAARLEKVEQLKQLGTNPYAYRWESTHHAAQLQEQFADLASGEEVDLE---VAIAGRIMARRVFGKLAFFTLQDETGTIQLYLDKNRIQESMADIDADAFNHLKQLTDAGDILGVKGTIKRTEKGELSVYVKQYTILTKSLLPLPDKWHGLTDVAKRYRQRYVDLIVNPEVRQTFRRRAQITAGIRRYLEQRDFLEIETPVL 205          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_ANAVT (Lysyl-tRNA synthetase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=lysS PE=3 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 6.389e-56
Identity = 111/205 (54.15%), Postives = 143/205 (69.76%), Query Frame = 1
Query:  211 EAVRALRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLL-------SDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            E +RA R++KVE+L+  G  PYAY+W+ TH A QLQE +  L +GEE ++E   V+          FGKLAF TL D++GTIQLY EK R+        +D F+ LK   D+GDILG  G++KRTEKGELS+ V  + ILTKSLLPLPDK+HGLTDV KRYRQRYVD++  PEV   FR+RA+I + IR+ +E   F+E+ETPVL
Sbjct:    4 EDIRAARLEKVEQLKQLGTNPYAYRWESTHHAAQLQEKFADLTSGEEVDTE---VAIAGRIMARRVFGKLAFFTLEDETGTIQLYLEKNRIQESMAETDADAFNHLKQLTDVGDILGAKGTIKRTEKGELSIYVKEYTILTKSLLPLPDKWHGLTDVAKRYRQRYVDLIVNPEVRQTFRRRAQITAGIRRYLEQRDFLEIETPVL 205          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_ANASP (Lysyl-tRNA synthetase OS=Anabaena sp. (strain PCC 7120) GN=lysS PE=3 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 2.428e-55
Identity = 111/205 (54.15%), Postives = 142/205 (69.27%), Query Frame = 1
Query:  211 EAVRALRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLL-------SDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            E +RA R++KVE+L+  G  PYAY+W+ TH A QLQE +  L +GEE  +E   V+          FGKLAF TL D++GTIQLY EK R+        ++ F+ LK   D+GDILG  G++KRTEKGELSV V  + ILTKSLLPLPDK+HGLTDV KRYRQRYVD++  PEV   FR+RA+I + IR+ +E   F+E+ETPVL
Sbjct:    4 EDIRAARLEKVEQLKQLGTNPYAYRWESTHHAAQLQEKFADLTSGEEVETE---VAIAGRIMARRVFGKLAFFTLEDETGTIQLYLEKNRIQESMAEIDANAFNHLKQLTDVGDILGAKGTIKRTEKGELSVYVKEYTILTKSLLPLPDKWHGLTDVAKRYRQRYVDLIVNPEVRQTFRRRAQITAGIRRYLEQRDFLEIETPVL 205          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_GLOVI (Lysyl-tRNA synthetase OS=Gloeobacter violaceus GN=lysS PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 2.060e-46
Identity = 96/202 (47.52%), Postives = 132/202 (65.35%), Query Frame = 1
Query:  211 EAVRALRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLL----SDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            E +R  R++K E+ R     PY Y+++RTH A  LQ  Y+ L NG+E     D VS           G +AF  L+DDSGTIQLY +K+R+     +D F  L    D GD +G  G+++RTE+GELSV V+ + +L KS+LPLP +Y+GLTDV KRYRQRY+D+++ P V + FRKRA IV EIR+ ++  GF+E+ETPVL
Sbjct:    4 EDLRRTRLEKAEQWRVHNQNPYPYRYERTHMAGDLQAKYKDLENGQEVE---DAVSVAGRIVARRVLGSVAFFGLQDDSGTIQLYFDKKRIRESMGADAFKWLDKLTDTGDFIGAHGTIRRTERGELSVYVHEYELLCKSILPLPSEYYGLTDVQKRYRQRYLDLIANPGVRETFRKRALIVREIRRFLDERGFLEIETPVL 202          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_SYNS3 (Lysyl-tRNA synthetase OS=Synechococcus sp. (strain CC9311) GN=lysS PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.636e-43
Identity = 93/196 (47.45%), Postives = 129/196 (65.82%), Query Frame = 1
Query:  217 VRALRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            +R  R++K   L+ +G EPYA ++D T    +LQ  +  LA G E + +   VS           GKLAF TL D++GTIQL+ EK  L  D F QL   VD GD++GV G ++RT++GELSV V+ + +LTKSL PLPDK+HGL DV+KRYRQRY+D++  P+  + FR+RA  VS IR+ ++   F+E+ETPVL
Sbjct:    4 LRETRLEKANALKEQGQEPYALRFDLTDRMARLQADHADLAKGAERDLK---VSVAGRVMTRRVMGKLAFFTLADETGTIQLFLEKATL-GDSFAQLSSLVDAGDLIGVHGILRRTDRGELSVKVSKWEMLTKSLQPLPDKWHGLADVEKRYRQRYLDLIVTPQSRETFRRRAMAVSAIRRWLDERDFLEIETPVL 195          
BLAST of CK933146 vs. ExPASy Swiss-Prot
Match: SYK_SYNPX (Lysyl-tRNA synthetase OS=Synechococcus sp. (strain WH8102) GN=lysS PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.251e-42
Identity = 93/199 (46.73%), Postives = 129/199 (64.82%), Query Frame = 1
Query:  217 VRALRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSDQ---FDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMVSKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 804
            +R  R++K + L   G  PYA  ++ TH    L E +  L NGEE       VS           GKLAF TL D++GTIQL+ EK  L + Q   F Q+   VD GD LGVSG+++RT++GELSV V+ + +LTK+L PLPDK+HGL DV+KRYRQRY+D++  P+  + FR+RA++VS IR+ ++   F+E+ETPVL
Sbjct:    4 LRDTRLEKCQALSDLGQGPYALNFEPTHRMAALHEAHADLPNGEEREVT---VSVAGRVMTRRVMGKLAFFTLADETGTIQLFLEKAGLEAQQEGWFKQITGLVDGGDWLGVSGTLRRTDRGELSVKVSDWRMLTKALQPLPDKWHGLADVEKRYRQRYLDLIVSPDSRETFRRRARLVSGIRRWLDQRDFLEIETPVL 199          
The following BLAST results are available for this feature:
BLAST of CK933146 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 437
Match NameE-valueIdentityDescription
SYK_SYNY35.227e-5855.39Lysyl-tRNA synthetase OS=Synechocystis sp. (strain... [more]
SYK_THEEB2.594e-5756.00Lysyl-tRNA synthetase OS=Thermosynechococcus elong... [more]
SYK_SYNP61.287e-5655.67Lysyl-tRNA synthetase OS=Synechococcus sp. (strain... [more]
SYK_SYNE71.287e-5655.67Lysyl-tRNA synthetase OS=Synechococcus elongatus (... [more]
SYK_NOSP76.389e-5655.12Lysyl-tRNA synthetase OS=Nostoc punctiforme (strai... [more]
SYK_ANAVT6.389e-5654.15Lysyl-tRNA synthetase OS=Anabaena variabilis (stra... [more]
SYK_ANASP2.428e-5554.15Lysyl-tRNA synthetase OS=Anabaena sp. (strain PCC ... [more]
SYK_GLOVI2.060e-4647.52Lysyl-tRNA synthetase OS=Gloeobacter violaceus GN=... [more]
SYK_SYNS33.636e-4347.45Lysyl-tRNA synthetase OS=Synechococcus sp. (strain... [more]
SYK_SYNPX5.251e-4246.73Lysyl-tRNA synthetase OS=Synechococcus sp. (strain... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004347_A08 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IF_A08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933146 ID=CK933146; Name=CK933146; organism=Citrus sinensis; type=EST; length=806bp
GGGGGAGTGGAGTGAAAATCAGAGAAAACAAAGATGGAGGCTTTGAAGTT
GTGGAGTACTCTATCCTCTCTACCAATCAGCTTCCGACACGTCATCCGCC
GGCGAACCTCTTTGACGTTTGTCCGCTGTCGCTCTTCCACTTCTATCACC
GTTTCCGCCGGCACTAGAAACCGTCGTGCTTCATCTTCTTCTACCTCCAC
TTCTGACCGCGAGGCCGTTCGTGCCCTGCGCATTAAGAAGGTAGAAGAAT
TGAGGAGCAAAGGGTTGGAGCCCTATGCATATAAGTGGGATAGGACGCAT
TCTGCAAATCAGCTACAAGAGATATATAGGCATTTAGCAAATGGTGAAGA
GTCGAATAGTGAGAATGATCATGTATCTGTAGCTGGGAGAGTTGTTGCTC
GTAGAGCATTTGGGAAGCTTGCATTTTTGACACTAAGAGATGACTCGGGT
ACGATACAGCTTTACTGCGAGAAGGAAAGGCTTTTAAGTGATCAGTTTGA
TCAGTTAAAGGTATTTGTTGATATTGGTGATATACTGGGTGTTAGTGGCT
CAATGAAACGGACAGAAAAAGGTGAGCTTTCTGTTCTTGTCAATTCATTC
GTGATTCTGACAAAATCTCTACTTCCGCTACCAGACAAATATCATGGTTT
AACTGATGTGGATAAACGTTACCGCCAAAGGTACGTAGATATGGTTTCAA
AACCTGAAGTAGCTGATGTATTCCGGAAAAGAGCAAAGATTGTTTCAGAG
ATACGCAAGACAGTGGAGTCTTTGGGTTTTGTTGAAGTTGAAACTCCAGT
TCTGCA
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