CK933147

Overview
NameCK933147
Unique NameCK933147
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length856
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1536 contig Csv1_Contig1536:1..856. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933147 vs. ExPASy Swiss-Prot
Match: STLP2_ARATH (SEC12-like protein 2 OS=Arabidopsis thaliana GN=STL2P PE=1 SV=4)

HSP 1 Score: 221.476 bits (563), Expect = 4.867e-57
Identity = 123/269 (45.72%), Postives = 169/269 (62.83%), Query Frame = 1
Query:   52 SRNEESHNLQKYGVPLYGAGWVPYDQVIRSTHXXXXXXXXXXXXXXXHGSKDEAVADKSDDIRRNYYVVLXXXXXXXNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLENRGP-GRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYI 855
            +   +  N+Q YGVP+Y A W+P +  +RS                   S+D+  +  S    R+  +VL        SGI N +L+   D  +NSLS+QP+  L   SDLPYRMA+HP   G+ICAL NSC+LF W+++ + E  + G   SE+V+ +L +VGQQLAL F+ EG++ AAG+E+G LRVFKWPS+  +LNES+AH+SVK L+FS  G+FLVSL   GP  RVWD+ +SA    L+KE DE+FASCRFS  +  + VLYI
Sbjct:    6 TETNQPSNMQTYGVPIYAADWIP-EVDVRSK-----------IIMDPEKSEDDDESSSSSSSSRSC-IVLSGGGGEGRSGISNVILICRVDLNTNSLSEQPLGRLVVGSDLPYRMAVHPREGGLICALPNSCKLFHWEDIMSREDNQAGE--SEEVIKELRDVGQQLALAFNPEGSVLAAGAEDGTLRVFKWPSMNTLLNESQAHSSVKCLTFSESGQFLVSL--GGPVCRVWDVNASAAVASLSKEKDEMFASCRFSVDSAGNEVLYI 257          
BLAST of CK933147 vs. ExPASy Swiss-Prot
Match: PHF1_ARATH (SEC12-like protein 1 OS=Arabidopsis thaliana GN=PHF1 PE=2 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 5.083e-22
Identity = 62/196 (31.63%), Postives = 98/196 (50.00%), Query Frame = 1
Query:  250 YVVLXXXXXXXNSGIRNAVLLSHFDF--ASNSLSDQPVAE--LRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLENRGPGRVWDLASSAVATPLAKENDELFASCRFS 822
            +V++        S + +  LL+ F F   + SLS  P+A   L+     P  +++HP GD  +C+  +  C+LFE            G+ I  K L  L+N G Q  + F  +G+  A G  +G LR+ +WP+L +IL+E +AH S++D+ FS D +FL +    G  R+W        + L +  DE    CRFS
Sbjct:   27 WVLIAKASKRRGSSVSSPALLNIFSFDPITASLSSSPLATHTLKDSDGDPVAVSVHPGGDYFVCSTSKGGCKLFELVGGAT------GITILAKELLPLQNAGLQKCMAFSFDGSKLAVGGVDGCLRIMEWPNLSVILDEPKAHKSIRDMDFSLDSEFLATTSTDGSARIWKAEDGFPLSTLERSGDENIELCRFS 216          
The following BLAST results are available for this feature:
BLAST of CK933147 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
STLP2_ARATH4.867e-5745.72SEC12-like protein 2 OS=Arabidopsis thaliana GN=ST... [more]
PHF1_ARATH5.083e-2231.63SEC12-like protein 1 OS=Arabidopsis thaliana GN=PH... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004347_A09 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IF_A09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933147 ID=CK933147; Name=CK933147; organism=Citrus sinensis; type=EST; length=856bp
GGGGAGCGTCGAGGACAGAGAAGGAAGCTGGGGAACTCAATGGGTANNNG
GAGCAGGAATGAAGAATCTCACAACTTGCAGAAATACGGCGTGCCGTTGT
ACGGTGCCGGTTGGGTTCCGTACGATCAAGTCATCAGATCCACGCACAAG
CCACCTAAACAACAAGACGATGACGACAAAGAGGAAGACCAGCATGGATC
CAAAGACGAAGCTGTCGCCGACAAATCCGACGATATTCGCCGCAACTACT
ACGTTGTTTTGGCCGGCGGTGGTGGTGCGGGCAACAGCGGCATCCGCAAC
GCCGTCCTTTTGTCTCACTTCGATTTCGCCTCCAATTCCCTCTCCGATCA
GCCGGTGGCTGAGCTTCGAACTGATTCTGATTTGCCTTATCGAATGGCTA
TTCACCCGCACGGTGATGGCATTATTTGTGCACTGCAAAATAGCTGCAGA
TTGTTTGAGTGGGATGAAGTGGAGAACACTGAAATCCGTAGACTGGGTGT
GAAAATTTCAGAGAAAGTGCTCAGCCAGTTAGAAAATGTTGGACAACAGT
TAGCACTAACGTTCGACTCTGAGGGTACTATATTTGCTGCTGGTAGTGAG
AATGGCAATTTAAGGGTTTTCAAGTGGCCTAGCCTGGAAATCATTCTGAA
TGAGTCTGAAGCCCATGCTTCTGTGAAGGATTTGTCTTTCAGCCCTGATG
GAAAATTCCTTGTCTCCTTGGAAAATCGTGGTCCTGGTAGGGTTTGGGAT
CTAGCTTCTTCAGCCGTTGCAACTCCTCTAGCGAAGGAAAATGATGAACT
TTTTGCTTCTTGTAGGTTCTCTCCACTAAATAATGAGGATTATGTTCTAT
ACATTG
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