CK933154

Overview
NameCK933154
Unique NameCK933154
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length640
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933154 vs. ExPASy Swiss-Prot
Match: RLA2_PARAR (60S acidic ribosomal protein P2 OS=Parthenium argentatum PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.088e-19
Identity = 46/62 (74.19%), Postives = 58/62 (93.55%), Query Frame = 3
Query:   57 MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKL 242
            MKV+AA+LLA+LGGNTSP+ +D+K IL SVGAD +D+++ELLLS+VKGKDITELIASGRE+L
Sbjct:    1 MKVIAAFLLALLGGNTSPTDEDLKSILASVGADADDDKIELLLSQVKGKDITELIASGRERL 62          
BLAST of CK933154 vs. ExPASy Swiss-Prot
Match: RLA2B_MAIZE (60S acidic ribosomal protein P2B OS=Zea mays GN=RPP2B PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.421e-19
Identity = 53/113 (46.90%), Postives = 66/113 (58.41%), Query Frame = 3
Query:   57 MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFSLFD 395
            MKV+AAYLLAVLGGNTSP+ADD+K IL SVGA+ ++ +LE LL+E+K KDITE+IA+GRE+L                                         D+DMGFSLFD
Sbjct:    1 MKVIAAYLLAVLGGNTSPTADDVKSILESVGAEADEEKLEFLLTELKDKDITEVIAAGRERLSSVPSGGGAIDMGAPAAVAGGGAAPAEEAKKEEKVEEKEESDEDMGFSLFD 113          
BLAST of CK933154 vs. ExPASy Swiss-Prot
Match: RLA22_ARATH (60S acidic ribosomal protein P2-2 OS=Arabidopsis thaliana GN=RPP2B PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.970e-18
Identity = 46/62 (74.19%), Postives = 54/62 (87.10%), Query Frame = 3
Query:   57 MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKL 242
            MKVVAAYLLAVL G  SP++ DIK ILGSVGA+ ED+++ELLL EVKGKD+ ELIA+GREKL
Sbjct:    1 MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGREKL 62          
BLAST of CK933154 vs. ExPASy Swiss-Prot
Match: RLA24_ARATH (60S acidic ribosomal protein P2-4 OS=Arabidopsis thaliana GN=RPP2D PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.330e-17
Identity = 45/62 (72.58%), Postives = 52/62 (83.87%), Query Frame = 3
Query:   57 MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKL 242
            MKV AA+LLAVLGGN +PSAD+IK I+G+VGAD +   +ELLL EV GKDI ELIASGREKL
Sbjct:    1 MKVAAAFLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGREKL 62          
BLAST of CK933154 vs. ExPASy Swiss-Prot
Match: RLA21_ARATH (60S acidic ribosomal protein P2-1 OS=Arabidopsis thaliana GN=RPP2A PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.330e-17
Identity = 45/62 (72.58%), Postives = 53/62 (85.48%), Query Frame = 3
Query:   57 MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKL 242
            MKVVAA+LLAVL G  SP+  DIK ILGSVGA+ ED+++ELLL EVKGKD+ ELIA+GREKL
Sbjct:    1 MKVVAAFLLAVLSGKASPTTGDIKDILGSVGAETEDSQIELLLKEVKGKDLAELIAAGREKL 62          
BLAST of CK933154 vs. ExPASy Swiss-Prot
Match: RLA2A_MAIZE (60S acidic ribosomal protein P2A OS=Zea mays GN=RPP2A PE=1 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 1.470e-16
Identity = 52/113 (46.02%), Postives = 61/113 (53.98%), Query Frame = 3
Query:   57 MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFSLFD 395
            MK VAAYLLAVL GN SPSADD+  IL SVG + ++ ++ELLLS++ GKDITELIA+GREK                                          DDDMGFSLFD
Sbjct:    1 MKFVAAYLLAVLAGNASPSADDLTAILESVGCEVDNEKMELLLSQLSGKDITELIAAGREKF-ASVPCGGGGVAVAAAAPAAGGAAPAAEAKKEEKVEEKEESDDDMGFSLFD 112          
BLAST of CK933154 vs. ExPASy Swiss-Prot
Match: RLA2_BRAFL (60S acidic ribosomal protein P2 OS=Branchiostoma floridae PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.297e-16
Identity = 42/62 (67.74%), Postives = 50/62 (80.65%), Query Frame = 3
Query:   57 MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKL 242
            M+ VAAYLLAVLGGN +PSA DIK ILGSVG D ED RL  ++ E+KGKDI E++A+GR KL
Sbjct:    1 MRYVAAYLLAVLGGNANPSAGDIKKILGSVGIDAEDERLNKVIGELKGKDIEEVMAAGRGKL 62          
BLAST of CK933154 vs. ExPASy Swiss-Prot
Match: RLA2_ALTAL (60S acidic ribosomal protein P2 OS=Alternaria alternata GN=ALTA5 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.773e-15
Identity = 48/113 (42.48%), Postives = 59/113 (52.21%), Query Frame = 3
Query:   57 MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFSLFD 395
            MK +AAYLL  LGGNTSPSA D+K +L SVG + + +RL+ L+SE++GKDI ELIASG EKL                                         D+DMGF LFD
Sbjct:    1 MKHLAAYLLLGLGGNTSPSAADVKAVLESVGIEADSDRLDKLISELEGKDINELIASGSEKLASVPSGGAGGAAASGGAAAAGGSAQAEAAPEAAKEEEKEESDEDMGFGLFD 113          
BLAST of CK933154 vs. ExPASy Swiss-Prot
Match: RLA2_FUSCU (60S acidic ribosomal protein P2 OS=Fusarium culmorum PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.004e-14
Identity = 39/62 (62.90%), Postives = 49/62 (79.03%), Query Frame = 3
Query:   57 MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKL 242
            MK +AAYLL  LGGNTSPSA D+K +L SVG D +++RL  L+SE++GKDI +LIA G EKL
Sbjct:    1 MKHLAAYLLLGLGGNTSPSAADVKAVLTSVGIDADEDRLNKLISELEGKDIQQLIAEGSEKL 62          
BLAST of CK933154 vs. ExPASy Swiss-Prot
Match: RLA2_CLAHE (60S acidic ribosomal protein P2 OS=Cladosporium herbarum GN=CLAH5 PE=1 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 1.522e-13
Identity = 38/62 (61.29%), Postives = 48/62 (77.42%), Query Frame = 3
Query:   57 MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKL 242
            MK +AA+LL  L GN+SPSA+DIK +L SVG D ++ RL  LL E++GKDI ELI+SG EKL
Sbjct:    1 MKYLAAFLLLGLAGNSSPSAEDIKTVLSSVGIDADEERLSSLLKELEGKDINELISSGSEKL 62          
The following BLAST results are available for this feature:
BLAST of CK933154 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
RLA2_PARAR1.088e-1974.1960S acidic ribosomal protein P2 OS=Parthenium arge... [more]
RLA2B_MAIZE1.421e-1946.9060S acidic ribosomal protein P2B OS=Zea mays GN=RP... [more]
RLA22_ARATH5.970e-1874.1960S acidic ribosomal protein P2-2 OS=Arabidopsis t... [more]
RLA24_ARATH1.330e-1772.5860S acidic ribosomal protein P2-4 OS=Arabidopsis t... [more]
RLA21_ARATH1.330e-1772.5860S acidic ribosomal protein P2-1 OS=Arabidopsis t... [more]
RLA2A_MAIZE1.470e-1646.0260S acidic ribosomal protein P2A OS=Zea mays GN=RP... [more]
RLA2_BRAFL7.297e-1667.7460S acidic ribosomal protein P2 OS=Branchiostoma f... [more]
RLA2_ALTAL2.773e-1542.4860S acidic ribosomal protein P2 OS=Alternaria alte... [more]
RLA2_FUSCU4.004e-1462.9060S acidic ribosomal protein P2 OS=Fusarium culmor... [more]
RLA2_CLAHE1.522e-1361.2960S acidic ribosomal protein P2 OS=Cladosporium he... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004289_H08 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IVF_H08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933154 ID=CK933154; Name=CK933154; organism=Citrus sinensis; type=EST; length=640bp
GGGGTCTCTTGCTCGCGTTTGTGTTGAGGATCCAGAGCCTCCCAGAGAAA
GAAGAAATGAAGGTGGTGGCAGCATATCTGTTGGCTGTTTTGGGAGGAAA
TACCAGCCCTTCCGCCGATGATATTAAGGGAATCCTTGGCTCTGTTGGAG
CTGATTGTGAGGACAATAGGCTTGAGCTCCTTCTATCAGAAGTTAAAGGC
AAAGACATAACTGAGCTTATTGCATCTGGGCGGGAGAAATTGGCCTCAGT
GCCTTCTGGTGGTGGAGTTGCAGTTGCTGCTGCTCCATCTGCCGGTGGTG
CAGGCGCTGCCCCAGCTGCTGCTGAGGCCAAGAAAGAGGAGAAAGTGGAG
GAGAAAGAAGAATCTGATGATGATATGGGTTTCAGTCTTTTCGACTAGAG
AGCTCTTCAGCGTTTTTTTCACCTCTTTCTCCTCAATTGGGAGCTTCTAA
CTGGACTTAAAAGTTTTGTTATTTTGGAGTTCTGTAGTTTTTAGTTTATA
TAATCCTTAGATGAAACTTTTACCGTGTTAAGTTGTGGCTCCATATTGAT
ATGCTGCTTTGTTATGCCTGCTCAGAGATTTATATATCTGGCGACCATCA
TTTTCTATTAACAAAAAAAAAAAAAAAAAAAAAAAAAAAA
back to top