CK933155

Overview
NameCK933155
Unique NameCK933155
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length458
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CK933155 vs. ExPASy Swiss-Prot
Match: TOCC_ARATH (Tocopherol cyclase, chloroplastic OS=Arabidopsis thaliana GN=VTE1 PE=1 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 1.827e-38
Identity = 71/111 (63.96%), Postives = 89/111 (80.18%), Query Frame = 1 
Query:    4 HMVELKATTKYPGTTLRAPTSEAGLAPACKDTCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGPWFNTWKAKTA-TPELLRRTLNVPVDVDGLFGFVPFFKPPGL 333
            H+VEL+A T   GT LRAPT+E GLA AC+D+C+GEL LQ+WER YDG+KGK+IL+  S MAA+E+GGGPWF TWK  T+ TPELL++ L VP+D++   G VPFFKPPGL
Sbjct:  378 HVVELEARTNEAGTPLRAPTTEVGLATACRDSCYGELKLQIWERLYDGSKGKVILETKSSMAAVEIGGGPWFGTWKGDTSNTPELLKQALQVPLDLESALGLVPFFKPPGL 488
[Close]
BLAST of CK933155 vs. ExPASy Swiss-Prot
Match: TOCC_MAIZE (Probable tocopherol cyclase, chloroplastic OS=Zea mays GN=SDX1 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 6.941e-38
Identity = 71/110 (64.55%), Postives = 86/110 (78.18%), Query Frame = 1 
Query:    4 HMVELKATTKYPGTTLRAPTSEAGLAPACKDTCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGPWFNTWKAKTATPELLRRTLNVPVDVDGLFGFVPFFKPPGL 333
            H+VE++ATT   GT LRAPT EAGL PACKDTC+G+L LQLWE++YDG+KG+MILD TS+MAALEVGGGPWFN WK  T   E++   +  PVDV+ L   +PF KPPGL
Sbjct:  366 HLVEIEATTAESGTALRAPTIEAGLVPACKDTCYGDLRLQLWEKKYDGSKGEMILDATSNMAALEVGGGPWFNGWKGTTVVNEVVNNIVGTPVDVESLLP-IPFLKPPGL 474
The following BLAST results are available for this feature:
BLAST of CK933155 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
TOCC_ARATH1.827e-3863.96Tocopherol cyclase, chloroplastic OS=Arabidopsis t... [more]
TOCC_MAIZE6.941e-3864.55Probable tocopherol cyclase, chloroplastic OS=Zea ... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004289_H09 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IVF_H09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933155 ID=CK933155; Name=CK933155; organism=Citrus sinensis; type=EST; length=458bp
GGGCATATGGTTGAGCTAAAGGCAACAACAAAGTATCCAGGCACAACATT
GCGTGCTCCAACTTCGGAAGCTGGCCTCGCTCCAGCTTGTAAAGATACTT
GTTTTGGTGAGCTAACATTGCAACTATGGGAACGAAGATATGATGGCACC
AAGGGAAAGATGATATTGGACGTTACAAGTGACATGGCGGCATTAGAAGT
TGGAGGAGGACCATGGTTCAATACTTGGAAAGCTAAGACTGCTACACCAG
AGCTTCTTAGACGCACTCTTAATGTTCCTGTTGACGTGGACGGCTTGTTT
GGTTTTGTTCCGTTCTTTAAACCCCCTGGTCTGTAGCCTGATTCCCGGAG
GAGCATTTTGTAAAGCATCTATAGGAGAATGTAATAACAACCATCGCTTA
AAATTACAATATAGCAGAATTTCTATTAACAAAAAAAAAAAAAAAAAAAA
AAAAAAAA
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