CK933179

Overview
NameCK933179
Unique NameCK933179
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length633
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1414 contig Csv1_Contig1414:117..754. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933179 vs. ExPASy Swiss-Prot
Match: R35A1_ARATH (60S ribosomal protein L35a-1 OS=Arabidopsis thaliana GN=RPL35AA PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 2.970e-54
Identity = 101/112 (90.18%), Postives = 105/112 (93.75%), Query Frame = 2
Query:   74 MVKGRQGERVRLYVRGTILGYKRSKSNQCPNTSLIQVEGVNTKEEVAWYCGKRLAYIHKAKTKKNGSHYRCIWGKVARSHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 409
            MVKGRQGERVRLYVRGTILGYKRSKSNQ PNTSL+QVEGVNT EEV+WY GKR+AYI+KAKTKKNGSHYRCIWGKV R HGNSGVVRAKF SNLPPKSMG RVRVFMYPSNI
Sbjct:    1 MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLVQVEGVNTTEEVSWYKGKRMAYIYKAKTKKNGSHYRCIWGKVTRPHGNSGVVRAKFTSNLPPKSMGSRVRVFMYPSNI 112          
BLAST of CK933179 vs. ExPASy Swiss-Prot
Match: R35A3_ARATH (60S ribosomal protein L35a-3 OS=Arabidopsis thaliana GN=RPL35AC PE=2 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 5.066e-54
Identity = 100/112 (89.29%), Postives = 105/112 (93.75%), Query Frame = 2
Query:   74 MVKGRQGERVRLYVRGTILGYKRSKSNQCPNTSLIQVEGVNTKEEVAWYCGKRLAYIHKAKTKKNGSHYRCIWGKVARSHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 409
            MVKGRQGERVRLYVRGTILGYKRSKSNQ PNTSL+Q+EGVNT+EEV WY GKR+AYI+KAKTKKNGSHYRCIWGKV R HGNSGVVRAKF SNLPPKSMG RVRVFMYPSNI
Sbjct:    1 MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLVQIEGVNTQEEVNWYKGKRMAYIYKAKTKKNGSHYRCIWGKVTRPHGNSGVVRAKFTSNLPPKSMGSRVRVFMYPSNI 112          
BLAST of CK933179 vs. ExPASy Swiss-Prot
Match: R35A2_ARATH (60S ribosomal protein L35a-2 OS=Arabidopsis thaliana GN=RPL35AB PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 9.554e-53
Identity = 98/111 (88.29%), Postives = 104/111 (93.69%), Query Frame = 2
Query:   77 VKGRQGERVRLYVRGTILGYKRSKSNQCPNTSLIQVEGVNTKEEVAWYCGKRLAYIHKAKTKKNGSHYRCIWGKVARSHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 409
            +KGRQGERVRLYVRGT+LGYKRSKSNQ PNTSLIQ+EGVNT+EEV WY GKRLAYI+KAKTKKNGSHYRCIWGKV R HGNSGVVR+KF SNLPPKSMG RVRVFMYPSNI
Sbjct:    1 MKGRQGERVRLYVRGTVLGYKRSKSNQYPNTSLIQIEGVNTQEEVNWYKGKRLAYIYKAKTKKNGSHYRCIWGKVTRPHGNSGVVRSKFTSNLPPKSMGARVRVFMYPSNI 111          
BLAST of CK933179 vs. ExPASy Swiss-Prot
Match: R35A4_ARATH (60S ribosomal protein L35a-4 OS=Arabidopsis thaliana GN=RPL35AD PE=3 SV=2)

HSP 1 Score: 206.068 bits (523), Expect = 1.248e-52
Identity = 97/111 (87.39%), Postives = 104/111 (93.69%), Query Frame = 2
Query:   77 VKGRQGERVRLYVRGTILGYKRSKSNQCPNTSLIQVEGVNTKEEVAWYCGKRLAYIHKAKTKKNGSHYRCIWGKVARSHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 409
            +KGRQGERVRLYVRGT+LGYKRSKSNQ PNTSL+Q+EGVNT+EEV WY GKRLAYI+KAKTKKNGSHYRCIWGKV R HGNSGVVR+KF SNLPPKSMG RVRVFMYPSNI
Sbjct:    1 MKGRQGERVRLYVRGTVLGYKRSKSNQYPNTSLVQIEGVNTQEEVNWYKGKRLAYIYKAKTKKNGSHYRCIWGKVTRPHGNSGVVRSKFTSNLPPKSMGARVRVFMYPSNI 111          
BLAST of CK933179 vs. ExPASy Swiss-Prot
Match: RL33B_YEAST (60S ribosomal protein L33-B OS=Saccharomyces cerevisiae GN=RPL33B PE=1 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 2.143e-28
Identity = 59/105 (56.19%), Postives = 77/105 (73.33%), Query Frame = 2
Query:   95 ERVRLYVRGTILGYKRSKSNQCPNTSLIQVEGVNTKEEVAWYCGKRLAYIHKAKTKKNGSHYRCIWGKVARSHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 409
            E  RLYV+G  L Y+RSK    PN SLI++EGV T +E  +Y GKR+AY+++A  +  GS  R +WGKV R+HGNSGVVRA F++NLP K+ G  VR+F+YPSNI
Sbjct:    3 ESHRLYVKGKHLSYQRSKRVNNPNVSLIKIEGVATPQEAQFYLGKRIAYVYRASKEVRGSKIRVMWGKVTRTHGNSGVVRATFRNNLPAKTFGASVRIFLYPSNI 107          
BLAST of CK933179 vs. ExPASy Swiss-Prot
Match: RL33A_YEAST (60S ribosomal protein L33-A OS=Saccharomyces cerevisiae GN=RPL33A PE=1 SV=3)

HSP 1 Score: 124.405 bits (311), Expect = 4.775e-28
Identity = 58/105 (55.24%), Postives = 77/105 (73.33%), Query Frame = 2
Query:   95 ERVRLYVRGTILGYKRSKSNQCPNTSLIQVEGVNTKEEVAWYCGKRLAYIHKAKTKKNGSHYRCIWGKVARSHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 409
            E  RLYV+G  L Y+RSK    PN SLI++EGV T ++  +Y GKR+AY+++A  +  GS  R +WGKV R+HGNSGVVRA F++NLP K+ G  VR+F+YPSNI
Sbjct:    3 ESHRLYVKGKHLSYQRSKRVNNPNVSLIKIEGVATPQDAQFYLGKRIAYVYRASKEVRGSKIRVMWGKVTRTHGNSGVVRATFRNNLPAKTFGASVRIFLYPSNI 107          
BLAST of CK933179 vs. ExPASy Swiss-Prot
Match: RL33A_SCHPO (60S ribosomal protein L33-A OS=Schizosaccharomyces pombe GN=rpl33a PE=2 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 6.453e-25
Identity = 52/102 (50.98%), Postives = 72/102 (70.59%), Query Frame = 2
Query:  104 RLYVRGTILGYKRSKSNQCPNTSLIQVEGVNTKEEVAWYCGKRLAYIHKAKTKKNGSHYRCIWGKVARSHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 409
            RLYV+   L ++RSK    P TSL+++EG ++KEE  +Y GKR+ +++K+     GS  R IWG V+R HGNSGVVRA+F  NLPPK+ G  +RV +YPSN+
Sbjct:    7 RLYVKAKHLSFQRSKHVIHPGTSLVKIEGCDSKEEAQFYLGKRICFVYKSNKPVRGSKIRVIWGTVSRPHGNSGVVRARFTHNLPPKTFGASLRVMLYPSNV 108          
BLAST of CK933179 vs. ExPASy Swiss-Prot
Match: RL35A_DICDI (60S ribosomal protein L35a OS=Dictyostelium discoideum GN=rpl35a PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 8.428e-25
Identity = 50/103 (48.54%), Postives = 79/103 (76.70%), Query Frame = 2
Query:  104 RLYVRGTILGYKRSKSNQCPNTSLIQVEGVNTKEEVAWYCGKRLAYIHK-AKTKKNGSHYRCIWGKVARSHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 409
            ++Y +G +LGY+RS++ Q PN SLI++EGV ++E+  +Y GK++  + K +K+ KN + ++  WGK+ ++HG+SGVV+A+F  NLPPK+MG  VRV +YPSNI
Sbjct:    3 KIYSKGVVLGYRRSQATQYPNISLIKIEGVVSREDSTFYLGKKVCLVSKVSKSAKNPTGHKISWGKICKTHGSSGVVQARFARNLPPKAMGAPVRVMLYPSNI 105          
BLAST of CK933179 vs. ExPASy Swiss-Prot
Match: RL35A_XENLA (60S ribosomal protein L35a OS=Xenopus laevis GN=rpl35a PE=3 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.101e-24
Identity = 54/107 (50.47%), Postives = 74/107 (69.16%), Query Frame = 2
Query:  104 RLYVRGTILGYKRSKSNQCPNTSLIQVEGVNTKEEVAWYCGKRLAYIHKAKTKK-----NGSHYRCIWGKVARSHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 409
            RL+ + T  GYKR   NQ  +T+L+++EGV  ++E  +Y GKR AY++KAK          +  R IWGKV R+HGNSG+VRAKF+SNLP K++G R+RV +YPS I
Sbjct:    4 RLWCKATFAGYKRGLRNQREHTALLKIEGVYARDETEFYFGKRCAYVYKAKNNTVTPGGKPNRTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110          
BLAST of CK933179 vs. ExPASy Swiss-Prot
Match: RL35A_ICTPU (60S ribosomal protein L35a OS=Ictalurus punctatus GN=rpl35a PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.438e-24
Identity = 55/107 (51.40%), Postives = 74/107 (69.16%), Query Frame = 2
Query:  104 RLYVRGTILGYKRSKSNQCPNTSLIQVEGVNTKEEVAWYCGKRLAYIHKAKTKK-----NGSHYRCIWGKVARSHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 409
            RL+ +    GYKR   NQ  +T+L++VEGV ++ EV +Y GKR AY++KAK          +  R IWGKV R+HGNSG+VRAKF SNLPPK++G R+RV +YPS +
Sbjct:    4 RLWCKAIFAGYKRGLRNQREHTALLKVEGVYSRNEVDFYLGKRCAYVYKAKKTTVTPGGKPNKTRVIWGKVTRAHGNSGMVRAKFTSNLPPKAIGHRIRVMLYPSRV 110          
The following BLAST results are available for this feature:
BLAST of CK933179 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
R35A1_ARATH2.970e-5490.1860S ribosomal protein L35a-1 OS=Arabidopsis thalia... [more]
R35A3_ARATH5.066e-5489.2960S ribosomal protein L35a-3 OS=Arabidopsis thalia... [more]
R35A2_ARATH9.554e-5388.2960S ribosomal protein L35a-2 OS=Arabidopsis thalia... [more]
R35A4_ARATH1.248e-5287.3960S ribosomal protein L35a-4 OS=Arabidopsis thalia... [more]
RL33B_YEAST2.143e-2856.1960S ribosomal protein L33-B OS=Saccharomyces cerev... [more]
RL33A_YEAST4.775e-2855.2460S ribosomal protein L33-A OS=Saccharomyces cerev... [more]
RL33A_SCHPO6.453e-2550.9860S ribosomal protein L33-A OS=Schizosaccharomyces... [more]
RL35A_DICDI8.428e-2548.5460S ribosomal protein L35a OS=Dictyostelium discoi... [more]
RL35A_XENLA1.101e-2450.4760S ribosomal protein L35a OS=Xenopus laevis GN=rp... [more]
RL35A_ICTPU1.438e-2451.4060S ribosomal protein L35a OS=Ictalurus punctatus ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004289_G05 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IVF_G05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933179 ID=CK933179; Name=CK933179; organism=Citrus sinensis; type=EST; length=633bp
GGGGCCTCCAACTAGGGTTTCTTCTTTGCAGACTCAGGCGGCAAGCAGGT
GGGCAGAGCTTCAATCATAAACAATGGTGAAGGGCAGGCAAGGCGAGCGC
GTCAGACTCTATGTTCGAGGAACAATTCTGGGATACAAAAGGTCAAAATC
AAACCAATGTCCAAACACATCACTGATTCAGGTCGAGGGAGTGAACACAA
AGGAAGAGGTGGCGTGGTACTGCGGCAAGCGTTTGGCTTACATTCACAAG
GCCAAGACTAAGAAGAACGGATCCCACTACCGTTGCATTTGGGGAAAAGT
TGCCAGATCTCACGGTAACAGCGGCGTCGTTCGCGCCAAGTTCAAGTCCA
ATCTCCCTCCCAAATCCATGGGAGATAGAGTTAGGGTTTTCATGTATCCC
AGCAACATATGAGCAGCATGGTTCGAGAAGCTACTCGATCAACAAGTGAA
ATTTACCTTCTGAATTTGGGATTTATTCGCTTAACATTTATGTTGCAAGA
TTTTGGAGTTGGGAGTTATACTGGCTAGATGTTTTGGCTTTTGCTACTGT
TAGTGTGGATTTTGGAACATTAATTTTAATGTTAATGCTTAGTTTTTTGT
TTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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