CK933189

Overview
NameCK933189
Unique NameCK933189
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length482
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11169 contig Csv1_Contig11169:1815..2296. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK933189 vs. ExPASy Swiss-Prot
Match: MTHR2_ARATH (Methylenetetrahydrofolate reductase 2 OS=Arabidopsis thaliana GN=MTHFR2 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 1.792e-13
Identity = 35/43 (81.40%), Postives = 40/43 (93.02%), Query Frame = 3 
Query:    6 ASLYPEGDSSRKLLEEVQSSYYLVSLVDNDYINGDLFAVFADL 134
            A+LYPE D SR LLEEV++SYYLVSLV+NDYINGD+FAVFADL
Sbjct:  552 ANLYPEADPSRNLLEEVKNSYYLVSLVENDYINGDIFAVFADL 594
[Close]
BLAST of CK933189 vs. ExPASy Swiss-Prot
Match: MTHR1_ARATH (Methylenetetrahydrofolate reductase 1 OS=Arabidopsis thaliana GN=MTHFR1 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.588e-12
Identity = 33/41 (80.49%), Postives = 39/41 (95.12%), Query Frame = 3 
Query:    6 ASLYPEGDSSRKLLEEVQSSYYLVSLVDNDYINGDLFAVFA 128
            A+LYPE D SRKLLEEV++SYYLVSLVDN+YINGD+F+VFA
Sbjct:  552 ANLYPEDDPSRKLLEEVKNSYYLVSLVDNNYINGDIFSVFA 592
[Close]
BLAST of CK933189 vs. ExPASy Swiss-Prot
Match: MTHR_ORYSJ (Probable methylenetetrahydrofolate reductase OS=Oryza sativa subsp. japonica GN=Os03g0815200 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.765e-12
Identity = 31/43 (72.09%), Postives = 39/43 (90.70%), Query Frame = 3 
Query:    6 ASLYPEGDSSRKLLEEVQSSYYLVSLVDNDYINGDLFAVFADL 134
            A L+PEGDSSR++L++VQ SY+LVSLVDNDYINGDLFA F ++
Sbjct:  552 ACLFPEGDSSREILDKVQKSYFLVSLVDNDYINGDLFAAFKEI 594
[Close]
BLAST of CK933189 vs. ExPASy Swiss-Prot
Match: MTHR1_MAIZE (Methylenetetrahydrofolate reductase 1 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.374e-11
Identity = 29/38 (76.32%), Postives = 35/38 (92.11%), Query Frame = 3 
Query:   12 LYPEGDSSRKLLEEVQSSYYLVSLVDNDYINGDLFAVF 125
            ++PEGDSSR+LLE+VQ +YYLVSLVDNDY+ GDLFA F
Sbjct:  554 MFPEGDSSRELLEKVQKTYYLVSLVDNDYVQGDLFAAF 591
The following BLAST results are available for this feature:
BLAST of CK933189 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
MTHR2_ARATH1.792e-1381.40Methylenetetrahydrofolate reductase 2 OS=Arabidops... [more]
MTHR1_ARATH2.588e-1280.49Methylenetetrahydrofolate reductase 1 OS=Arabidops... [more]
MTHR_ORYSJ5.765e-1272.09Probable methylenetetrahydrofolate reductase OS=Or... [more]
MTHR1_MAIZE6.374e-1176.32Methylenetetrahydrofolate reductase 1 OS=Zea mays ... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004289_F07 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IVF_F07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933189 ID=CK933189; Name=CK933189; organism=Citrus sinensis; type=EST; length=482bp
GGGGGGCTTCATTGTACCCTGAGGGAGACTCATCAAGAAAATTGCTTGAA
GAGGTGCAGAGCAGCTATTATTTGGTCAGCTTGGTGGATAATGATTACAT
CAATGGGGATCTTTTTGCTGTTTTTGCCGATCTCTAGGTTAAGCTGCTGT
ACTCCATGGAATTACAACCTGATTTCATCAATGGTCATCTTGTACCCTCA
CTGAAGCCATTTGAAGTGTTGCCTTCTCTCAAGTTAATTTCAATTGAAAT
TTATCCAAAATTACAAGCTTACTGATTGTATTAATAAGATGATAGGGATT
TTGATACCTCCCTGATGCTCCATGCAAATTAAATTGGCAGCTTTCATTCT
ATTGAATCGCTCCTAATCATTTGTCAATGGAAGTTGCAATCTGAAAATTG
TAGCGTTACCTAAATATATTTAATTCCAATAAAGTGAATCTTTGTTTTTC
TGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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