CK933929

Overview
NameCK933929
Unique NameCK933929
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length846
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK933929_ssr5 microsatellite CK933929_ssr5:5..14. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13719 contig Csv1_Contig13719:5..850. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933929 vs. ExPASy Swiss-Prot
Match: LARP7_DANRE (La-related protein 7 OS=Danio rerio GN=larp7 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.564e-18
Identity = 56/182 (30.77%), Postives = 99/182 (54.40%), Query Frame = 1
Query:  301 CEDPIKDHENSSTPAVLTDDLKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVAALRESSLLVVSSNGKKVKRLNPLPVTEVRDPKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPNVVEESKKSSKYEYLVSNKLHAFVEYETVEAAEKA 846
            C D  +  +N          L   + KQVE++F D NL  D++M ++I ++++G++ I+V+ +F ++K LT +   I  AL+ S+++ V+  G +++R  PL  T  +D    TV VE LP+  +   ++R+F++ G +  I I             +Y+    +K  AFVE+ET E A+KA
Sbjct:   22 CADLSEKKDNEKKKRSRVKQLLSDVKKQVEFWFGDVNLHKDRFMKSIIEQSRDGYIDIAVLTTFNRMKNLTADVKLIARALKNSTIVEVNDEGTRIRRKEPLGETP-KDVDSRTVYVELLPKTVTHIWLERVFSKCGHVVYISI------------PRYKSTRHSKGFAFVEFETQEQAQKA 190          
BLAST of CK933929 vs. ExPASy Swiss-Prot
Match: LARP7_MOUSE (La-related protein 7 OS=Mus musculus GN=Larp7 PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 2.835e-17
Identity = 55/158 (34.81%), Postives = 88/158 (55.70%), Query Frame = 1
Query:  373 IIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVAALRESSLLVVSSNGKKVKRLNPLPVTEVRDPKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPNVVEESKKSSKYEYLVSNKLHAFVEYETVEAAEKA 846
            I KQV+++F D NL  DK++   I K+++G+V IS++ SF K+K+LT +   I  AL+ SS++ +   G +++R  PL     +D +  TV VE LP++ +   ++R+F + G +  I I              Y+     K  AFVE+ET E A KA
Sbjct:   32 IAKQVDFWFGDANLHKDKFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARALKSSSVVELDLEGTRIRRKKPLG-ERPKDEEERTVYVELLPKNVTHSWIERVFGKCGNVVYISI------------PHYKSTGDPKGFAFVEFETKEQAAKA 176          
BLAST of CK933929 vs. ExPASy Swiss-Prot
Match: LARP7_RAT (La-related protein 7 OS=Rattus norvegicus GN=Larp7 PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 6.316e-17
Identity = 54/158 (34.18%), Postives = 88/158 (55.70%), Query Frame = 1
Query:  373 IIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVAALRESSLLVVSSNGKKVKRLNPLPVTEVRDPKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPNVVEESKKSSKYEYLVSNKLHAFVEYETVEAAEKA 846
            I KQV+++F D NL  D+++   I K+++G+V IS++ SF K+K+LT +   I  AL+ SS++ +   G +++R  PL     +D +  TV VE LP++ +   ++R+F + G +  I I              Y+     K  AFVE+ET E A KA
Sbjct:   33 IAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARALKSSSVVELDLEGTRIRRKKPLG-ERPKDEEERTVYVELLPKNVTHSWIERVFGKCGNVVYISI------------PHYKSTGDPKGFAFVEFETKEQAAKA 177          
BLAST of CK933929 vs. ExPASy Swiss-Prot
Match: LARP7_MACFA (La-related protein 7 OS=Macaca fascicularis GN=LARP7 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.316e-17
Identity = 58/178 (32.58%), Postives = 94/178 (52.81%), Query Frame = 1
Query:  313 IKDHENSSTPAVLTDDLKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVAALRESSLLVVSSNGKKVKRLNPLPVTEVRDPKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPNVVEESKKSSKYEYLVSNKLHAFVEYETVEAAEKA 846
            ++  + S    VL D     I KQV+++F D NL  D+++   I K+++G+V IS++ SF K+K+LT +   I  ALR S+++ +   G +++R  PL     +D    TV VE LP++ +   ++R+F + G +  I I              Y+     K  AFVE+ET E A KA
Sbjct:   23 VEKKKRSRVKQVLAD-----IAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARALRSSAVVELDLEGTRIRRKKPLG-ERPKDEDERTVYVELLPKNVNHSWIERVFGKCGNVVYISI------------PHYKSTGDPKGFAFVEFETKEQAAKA 182          
BLAST of CK933929 vs. ExPASy Swiss-Prot
Match: LARP7_HUMAN (La-related protein 7 OS=Homo sapiens GN=LARP7 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.316e-17
Identity = 58/178 (32.58%), Postives = 94/178 (52.81%), Query Frame = 1
Query:  313 IKDHENSSTPAVLTDDLKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVAALRESSLLVVSSNGKKVKRLNPLPVTEVRDPKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPNVVEESKKSSKYEYLVSNKLHAFVEYETVEAAEKA 846
            ++  + S    VL D     I KQV+++F D NL  D+++   I K+++G+V IS++ SF K+K+LT +   I  ALR S+++ +   G +++R  PL     +D    TV VE LP++ +   ++R+F + G +  I I              Y+     K  AFVE+ET E A KA
Sbjct:   23 VEKKKRSRVKQVLAD-----IAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARALRSSAVVELDLEGTRIRRKKPLG-ERPKDEDERTVYVELLPKNVNHSWIERVFGKCGNVVYISI------------PHYKSTGDPKGFAFVEFETKEQAAKA 182          
BLAST of CK933929 vs. ExPASy Swiss-Prot
Match: LARP7_XENTR (La-related protein 7 OS=Xenopus tropicalis GN=larp7 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.249e-17
Identity = 56/177 (31.64%), Postives = 96/177 (54.24%), Query Frame = 1
Query:  316 KDHENSSTPAVLTDDLKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVAALRESSLLVVSSNGKKVKRLNPLPVTEVRDPKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPNVVEESKKSSKYEYLVSNKLHAFVEYETVEAAEKA 846
            KD E      V    L   I KQV+++F D NL  D+++   I K ++G++ IS++ASF K+K++T +   I  A++ SS++ ++ +G K++R  PL   + +D    TV VE LP++ +   ++R+F + G +  + I             +Y+     K  AF+E+ET E A KA
Sbjct:   23 KDREKKKRSRV--KQLLADIAKQVDFWFGDVNLHKDRFLREQIEKTRDGYIDISLLASFNKMKKITTDSKLIARAVKNSSVVEINLSGTKIRRRFPLG-EKPQDVDSRTVYVELLPKNVTHSWIERVFGKYGMVVYVSI------------PRYKSTGDPKGFAFIEFETQEQAAKA 184          
BLAST of CK933929 vs. ExPASy Swiss-Prot
Match: LARP6_HUMAN (La-related protein 6 OS=Homo sapiens GN=LARP6 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.077e-16
Identity = 54/183 (29.51%), Postives = 100/183 (54.64%), Query Frame = 1
Query:  355 DDLKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVAALRESSLLVVSSNGKKVKRLNPLPVTEVRD--------------PKLFTVLV---ENLPEDHSVENMQRIFAEAGKIKSICIRDP--NVVEESKKSSKYEYLVSNKLHAFVEYETVEAAEKA 846
            ++L ++++ Q+E+YFSDENL  D +++  +R+NK G+V + ++ SF+K+K LTR+      AL+ S +L ++ + +KV+R  P+P+    +              PKL+ +         ++  +E++ ++F   G I S+ I  P   +  + ++ S     V  +  A VE+E VEAA KA
Sbjct:   90 EELIKKLVDQIEFYFSDENLEKDAFLLKHVRRNKLGYVSVKLLTSFKKVKHLTRDWRTTAHALKYSVVLELNEDHRKVRRTTPVPLFPNENLPSKMLLVYDLYLSPKLWALATPQKNGRVQEKVMEHLLKLFGTFGVISSVRILKPGRELPPDIRRISSRYSQVGTQECAIVEFEEVEAAIKA 272          
BLAST of CK933929 vs. ExPASy Swiss-Prot
Match: LARP6_MOUSE (La-related protein 6 OS=Mus musculus GN=Larp6 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.400e-16
Identity = 58/213 (27.23%), Postives = 108/213 (50.70%), Query Frame = 1
Query:  304 EDPIKDHENSSTPAVLTD-------------DLKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVAALRESSLLVVSSNGKKVKRLNPLPVTEVRD--------------PKLFTVLV---ENLPEDHSVENMQRIFAEAGKIKSICIRDP--NVVEESKKSSKYEYLVSNKLHAFVEYETVEAAEKA 846
            E+P + H +++T     D             +L ++++ Q+E+YFSDENL  D +++  +R+NK G+V + ++ SF+K+K LTR+      AL+ S  L ++ + +KV+R  P+P+    +              PKL+ +         ++  +E++ ++F   G I S+ I  P   +  + ++ S     V  +  A VE+E V+AA KA
Sbjct:   60 EEPSRGHSSATTSGGENDREDLEPEWRPPDEELIRKLVDQIEFYFSDENLEKDAFLLKHVRRNKLGYVSVKLLTSFKKVKHLTRDWRTTAHALKYSVTLELNEDHRKVRRTTPVPLFPNENLPSKMLLVYDLHLSPKLWALATPQKNGRVQEKVMEHLLKLFGTFGVISSVRILKPGRELPPDIRRISSRYSQVGTQECAIVEFEEVDAAIKA 272          
BLAST of CK933929 vs. ExPASy Swiss-Prot
Match: LAH1_YEAST (La protein homolog OS=Saccharomyces cerevisiae GN=LAH1 PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 2.654e-15
Identity = 51/152 (33.55%), Postives = 84/152 (55.26%), Query Frame = 1
Query:  316 KDHENSSTPAVLTDDLKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVAALRESSLLVVSSNGKKVKRLNPLPVTEVRDPKL----FTVLVENLPED--------HSVENMQRIFAEAGKIKSICIR 735
            +   NS      T ++  R +KQVE+YFS+ N P D+++     KN +G+VPIS IA+F ++K+  R    ++ ALR S +L VS++G+ VKR  PL +T  R+ ++     T+ V N P +           EN++  F + G+I  + +R
Sbjct:   14 QSRRNSFAVIEFTPEVLDRCLKQVEFYFSEFNFPYDRFLRTTAEKN-DGWVPISTIATFNRMKKY-RPVDKVIEALRSSEILEVSADGENVKRRVPLDLTAARNARIEQNQRTLAVMNFPHEDVEASQIPELQENLEAFFKKLGEINQVRLR 163          
BLAST of CK933929 vs. ExPASy Swiss-Prot
Match: LA_HUMAN (Lupus La protein OS=Homo sapiens GN=SSB PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 4.237e-13
Identity = 51/168 (30.36%), Postives = 92/168 (54.76%), Query Frame = 1
Query:  361 LKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVAALRES--SLLVVSSNGKKVKRLNPLPVTEV-----RDPKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPNVVEESKKSSKYEYLVSNKLHAFVEYETVEAAEK 843
            L+ +I  Q+EYYF D NLP DK++   I K  EG+VP+ ++  F +L RLT +   IV AL +S   L+ +S +  K++R    P+ EV      D K  +V ++  P D ++++++    + G++ +I +R    + ++ K S            FV ++++E+A+K
Sbjct:   13 LEAKICHQIEYYFGDFNLPRDKFLKEQI-KLDEGWVPLEIMIKFNRLNRLTTDFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMR--RTLHKAFKGS-----------IFVVFDSIESAKK 166          
The following BLAST results are available for this feature:
BLAST of CK933929 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
LARP7_DANRE2.564e-1830.77La-related protein 7 OS=Danio rerio GN=larp7 PE=2 ... [more]
LARP7_MOUSE2.835e-1734.81La-related protein 7 OS=Mus musculus GN=Larp7 PE=1... [more]
LARP7_RAT6.316e-1734.18La-related protein 7 OS=Rattus norvegicus GN=Larp7... [more]
LARP7_MACFA6.316e-1732.58La-related protein 7 OS=Macaca fascicularis GN=LAR... [more]
LARP7_HUMAN6.316e-1732.58La-related protein 7 OS=Homo sapiens GN=LARP7 PE=1... [more]
LARP7_XENTR8.249e-1731.64La-related protein 7 OS=Xenopus tropicalis GN=larp... [more]
LARP6_HUMAN1.077e-1629.51La-related protein 6 OS=Homo sapiens GN=LARP6 PE=1... [more]
LARP6_MOUSE2.400e-1627.23La-related protein 6 OS=Mus musculus GN=Larp6 PE=1... [more]
LAH1_YEAST2.654e-1533.55La protein homolog OS=Saccharomyces cerevisiae GN=... [more]
LA_HUMAN4.237e-1330.36Lupus La protein OS=Homo sapiens GN=SSB PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionCGF1004543_D06 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IIF_D06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933929 ID=CK933929; Name=CK933929; organism=Citrus sinensis; type=EST; length=846bp
GGGGGAGAGAGAGAGCAGGGAGAAGAAAGAAGAATGGGCGGGAGGGGTTT
TACCTAAAGGGAATCTCATTTCAGCCTATTCTTGCCTCAATACTCTTTTC
TTCGTCCTCTACCCCTCTCCTTCCGTCCCCAGAAAATGGACGGCTTAGAG
GGTCCCACCTCTACCACCGCCATCCCGGCCGTGGATTCGAACCCACCGTC
TCCTCGGCTCGATCCAGATTTCTCTCCCGTTGGATCACCCGAGCACGACA
TCCCTGATGTTCCAGTTCCACCGTCAGATGACGATCATGATCACGACCAC
TGCGAGGATCCAATTAAAGATCACGAGAACTCCTCTACTCCAGCTGTTCT
CACTGATGATCTGAAACAAAGGATCATTAAGCAGGTGGAATACTATTTTA
GTGATGAGAATTTGCCCACTGATAAGTATATGATGAATTTGATTAGAAAG
AATAAAGAAGGTTTCGTTCCAATATCAGTTATTGCTTCTTTTAGGAAATT
GAAGAGGCTTACCCGAAACCATGCATGGATAGTGGCTGCACTCAGGGAAT
CATCCTTGCTTGTTGTGAGTTCAAATGGGAAGAAGGTAAAGCGCCTTAAT
CCTCTGCCAGTCACTGAAGTCAGGGATCCTAAGTTATTCACTGTTTTGGT
AGAGAATCTACCTGAGGATCACTCGGTAGAGAACATGCAGAGAATATTTG
CAGAAGCTGGAAAAATAAAAAGCATCTGCATCCGTGATCCAAATGTTGTG
GAAGAGTCGAAAAAAAGCAGCAAATATGAGTACTTGGTTAGTAATAAGTT
ACACGCTTTTGTGGAGTACGAGACTGTGGAGGCTGCTGAGAAAGCT
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