CK933935

Overview
NameCK933935
Unique NameCK933935
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length792
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK933935_ssr72 microsatellite CK933935_ssr72:72..81. BLAST: Citrus ESTs to Prunus persica proteins V1
CK933935_ssr5 microsatellite CK933935_ssr5:5..20. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1642 contig Csv1_Contig1642:1..793. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933935 vs. ExPASy Swiss-Prot
Match: GOX2_ARATH (Probable peroxisomal (S)-2-hydroxy-acid oxidase 2 OS=Arabidopsis thaliana GN=At3g14420 PE=1 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 6.603e-58
Identity = 110/128 (85.94%), Postives = 118/128 (92.19%), Query Frame = 3
Query:  408 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMSTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVASTGPGIRFFQLY 791
            EITNV EY+AIAK+KLPKMV+DYYASGAEDQWTLQENRNAF+RILFRPRILIDVSKIDM+TTVLGFKISMPIM+APTAMQKMAHP+GEY         GTIMTLSSW+TSSVEEVASTGPGIRFFQLY
Sbjct:    2 EITNVTEYDAIAKQKLPKMVYDYYASGAEDQWTLQENRNAFARILFRPRILIDVSKIDMTTTVLGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLY 129          
BLAST of CK933935 vs. ExPASy Swiss-Prot
Match: GOX_SPIOL (Peroxisomal (S)-2-hydroxy-acid oxidase OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 3.277e-57
Identity = 110/128 (85.94%), Postives = 116/128 (90.62%), Query Frame = 3
Query:  408 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMSTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVASTGPGIRFFQLY 791
            EITNV EYEAIAK+KLPKMV+DYYASGAEDQWTL ENRNAFSRILFRPRILIDV+ IDM+TT+LGFKISMPIMIAPTAMQKMAHPEGEY         GTIMTLSSW+TSSVEEVASTGPGIRFFQLY
Sbjct:    2 EITNVNEYEAIAKQKLPKMVYDYYASGAEDQWTLAENRNAFSRILFRPRILIDVTNIDMTTTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLY 129          
BLAST of CK933935 vs. ExPASy Swiss-Prot
Match: GOX1_ARATH (Probable peroxisomal (S)-2-hydroxy-acid oxidase 1 OS=Arabidopsis thaliana GN=At3g14415 PE=1 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.245e-56
Identity = 108/128 (84.38%), Postives = 116/128 (90.62%), Query Frame = 3
Query:  408 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMSTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVASTGPGIRFFQLY 791
            EITNV EY+AIAK KLPKMV+DYYASGAEDQWTLQENRNAF+RILFRPRILIDV+KIDM+TTVLGFKISMPIM+APTA QKMAHP+GEY         GTIMTLSSW+TSSVEEVASTGPGIRFFQLY
Sbjct:    2 EITNVTEYDAIAKAKLPKMVYDYYASGAEDQWTLQENRNAFARILFRPRILIDVNKIDMATTVLGFKISMPIMVAPTAFQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLY 129          
BLAST of CK933935 vs. ExPASy Swiss-Prot
Match: HAOX1_HUMAN (Hydroxyacid oxidase 1 OS=Homo sapiens GN=HAO1 PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.586e-27
Identity = 64/125 (51.20%), Postives = 85/125 (68.00%), Query Frame = 3
Query:  420 VMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMSTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVASTGP-GIRFFQLY 791
            + +YE  AK  LPK ++DYY SGA D+ TL +N  AFSR    PR+L +V++ D+ST+VLG ++SMPI +  TAMQ+MAH +GE          GT M LSSW+TSS+EEVA  GP  +R+ QLY
Sbjct:    8 INDYEQHAKSVLPKSIYDYYRSGANDEETLADNIAAFSRWKLYPRMLRNVAETDLSTSVLGQRVSMPICVGATAMQRMAHVDGELATVRACQSLGTGMMLSSWATSSIEEVAEAGPEALRWLQLY 132          
BLAST of CK933935 vs. ExPASy Swiss-Prot
Match: HAOX_DICDI (Hydroxyacid oxidase OS=Dictyostelium discoideum GN=haox PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 7.873e-27
Identity = 69/141 (48.94%), Postives = 86/141 (60.99%), Query Frame = 3
Query:  372 NLSRKQSTVKMGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMSTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVAS-TGPGIRFFQLY 791
            N    + T ++    +V E    AK  LPKM +DYYASG+ DQ TL EN NAFSRI   PR L+DVSK++  T + G  IS PI+IAP AMQ+MA   GE           TIMTLSS ST+SVE+++S T     +FQLY
Sbjct:   18 NQFSNKKTNRLDSFVSVSELHEEAKRLLPKMAYDYYASGSNDQITLAENENAFSRIKLVPRSLVDVSKVNTKTRIFGRDISTPILIAPWAMQRMASQRGELDTVEASKEFNTIMTLSSLSTTSVEDLSSATNGNPGWFQLY 158          
BLAST of CK933935 vs. ExPASy Swiss-Prot
Match: HAOX1_MOUSE (Hydroxyacid oxidase 1 OS=Mus musculus GN=Hao1 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.291e-26
Identity = 64/125 (51.20%), Postives = 82/125 (65.60%), Query Frame = 3
Query:  420 VMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMSTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVASTGP-GIRFFQLY 791
            + +YE   +  L K V+DYY SGA DQ TL +N  AFSR    PR+L +V+ ID+ST+VLG ++SMPI +  TAMQ MAH +GE          GT M LSSW+TSS+EEVA  GP  +R+ QLY
Sbjct:    8 ISDYEQHVRSVLQKSVYDYYRSGANDQETLADNIQAFSRWKLYPRMLRNVADIDLSTSVLGQRVSMPICVGATAMQCMAHVDGELATVRACQTMGTGMMLSSWATSSIEEVAEAGPEALRWMQLY 132          
BLAST of CK933935 vs. ExPASy Swiss-Prot
Match: CYB2_HANAN (Cytochrome b2, mitochondrial OS=Hansenula anomala GN=CYB2 PE=1 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.438e-20
Identity = 53/141 (37.59%), Postives = 82/141 (58.16%), Query Frame = 3
Query:  375 LSRKQSTVKMGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMSTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVASTG-PG-IRFFQLY 791
            L R +    + ++ N+ ++E IA++ LP     YY S A+D+ TL+EN NA+ RI F P+ILIDV  +D+ST   G K S P  I+ TA+ K+ HPEGE            +  +S+ ++ S +E+A    PG  +++QLY
Sbjct:  175 LERIERKPPLSQMINLHDFETIARQILPPPALAYYCSAADDEVTLRENHNAYHRIFFNPKILIDVKDVDISTEFFGEKTSAPFYISATALAKLGHPEGEVAIAKGAGREDVVQMISTLASCSFDEIADARIPGQQQWYQLY 315          
BLAST of CK933935 vs. ExPASy Swiss-Prot
Match: HAOX2_BOVIN (Hydroxyacid oxidase 2 OS=Bos taurus GN=HAO2 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.031e-18
Identity = 49/123 (39.84%), Postives = 72/123 (58.54%), Query Frame = 3
Query:  426 EYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMSTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVASTGP-GIRFFQLY 791
            ++   A+E L K  +D+   GA+D  T  EN  AF +I  RPR L DVSK+DM TT+ G +IS PI IAPT   ++A P+GE                S++++ S+E++ +  P G+R+FQLY
Sbjct:    8 DFREHAREHLSKSTWDFIEGGADDCCTRDENMAAFKKIRLRPRYLKDVSKVDMRTTIQGAEISAPICIAPTGFHRLAWPDGEMSTARAAQAASICYITSTYASCSLEDIVAAAPRGLRWFQLY 130          
BLAST of CK933935 vs. ExPASy Swiss-Prot
Match: CYB2_YEAST (Cytochrome b2, mitochondrial OS=Saccharomyces cerevisiae GN=CYB2 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.031e-18
Identity = 51/136 (37.50%), Postives = 81/136 (59.56%), Query Frame = 3
Query:  402 MGEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMSTTVLGFKISMPIMIAPTAMQKMAHP-EGEYXXXXXXXXXGT-----IMTLSSWSTSSVEEVASTGPGIRFFQLY 791
            +  I N+ ++E +A + L K  + YY+SGA D+ T +EN NA+ RI F+P+IL+DV K+D+ST +LG  + +P  ++ TA+ K+ +P EGE           T     I TL+S S   + E A +   I+++QLY
Sbjct:  199 LDNIINLYDFEYLASQTLTKQAWAYYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKVDISTDMLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEIIEAAPSDKQIQWYQLY 334          
BLAST of CK933935 vs. ExPASy Swiss-Prot
Match: MDLB_PSEPU ((S)-mandelate dehydrogenase OS=Pseudomonas putida GN=mdlB PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.758e-18
Identity = 46/125 (36.80%), Postives = 74/125 (59.20%), Query Frame = 3
Query:  417 NVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMSTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVASTGPGIRFFQLY 791
            NV +Y  + +++LPKMV+DY   GAED++ ++ NR+ F +  F+P+ L+DVS+  +   VLG + SMP++I PT +     P+G+          G    LS+ S  S+E++A    G  +FQLY
Sbjct:    7 NVEDYRKLRQKRLPKMVYDYLEGGAEDEYGVKHNRDVFQQWRFKPKRLVDVSRRSLQAEVLGKRQSMPLLIGPTGLNGALWPKGDLALARAATKAGIPFVLSTASNMSIEDLARQCDGDLWFQLY 131          
The following BLAST results are available for this feature:
BLAST of CK933935 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
GOX2_ARATH6.603e-5885.94Probable peroxisomal (S)-2-hydroxy-acid oxidase 2 ... [more]
GOX_SPIOL3.277e-5785.94Peroxisomal (S)-2-hydroxy-acid oxidase OS=Spinacia... [more]
GOX1_ARATH1.245e-5684.38Probable peroxisomal (S)-2-hydroxy-acid oxidase 1 ... [more]
HAOX1_HUMAN1.586e-2751.20Hydroxyacid oxidase 1 OS=Homo sapiens GN=HAO1 PE=1... [more]
HAOX_DICDI7.873e-2748.94Hydroxyacid oxidase OS=Dictyostelium discoideum GN... [more]
HAOX1_MOUSE2.291e-2651.20Hydroxyacid oxidase 1 OS=Mus musculus GN=Hao1 PE=2... [more]
CYB2_HANAN1.438e-2037.59Cytochrome b2, mitochondrial OS=Hansenula anomala ... [more]
HAOX2_BOVIN1.031e-1839.84Hydroxyacid oxidase 2 OS=Bos taurus GN=HAO2 PE=2 S... [more]
CYB2_YEAST1.031e-1837.50Cytochrome b2, mitochondrial OS=Saccharomyces cere... [more]
MDLB_PSEPU1.758e-1836.80(S)-mandelate dehydrogenase OS=Pseudomonas putida ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004543_E01 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IIF_E01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933935 ID=CK933935; Name=CK933935; organism=Citrus sinensis; type=EST; length=792bp
GGGGATTTATTTATTTATTTAAAAATTTGATAACAAGAGGGATAATGATA
ATGAAGAAGAAAAATTATGAAACACACACACCATATGCAGATGATAGCCA
CCCATTTTCCCTGATAAGATTTGTTCTCAATTTCTCACCTCCAAATGCTC
ATCCACTCAACTTGCATTTTCTTGTTTAATTTTTTTTTCTTGTCTTATAA
TTCAATCAGGCCCCTTGTTTTGTCTCCATGAAAACTTATATCTATTTTAT
TTTCTCTTTGCTTTCTATTTCTTAAATCTCCCTCTATAACTCAGTCTTTG
TTCATCATCGTCTTCTCTCCACTGGTTTCTCTGAATGCACTTTGCTGCAC
AGTCTTTGTAAACCTTAGATTAATTTAAGTAGAAAACAGTCAACTGTCAA
GATGGGGGAGATCACAAATGTGATGGAGTATGAGGCCATTGCCAAGGAAA
AGTTGCCAAAGATGGTGTTTGATTACTATGCTTCAGGTGCAGAGGACCAG
TGGACTTTGCAAGAGAACAGGAATGCTTTCTCAAGAATCCTGTTTCGACC
TCGCATTCTGATTGATGTAAGCAAAATAGACATGAGTACCACTGTCTTGG
GCTTCAAGATATCGATGCCAATCATGATTGCCCCAACAGCCATGCAGAAG
ATGGCTCATCCTGAAGGGGAGTATGCTACAGCTAGAGCTGCATCGGCTGC
TGGAACGATTATGACATTGTCTTCGTGGTCTACTTCTAGCGTTGAAGAGG
TTGCTTCAACAGGACCTGGCATCCGCTTTTTCCAGCTCTATG
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