CK933941

Overview
NameCK933941
Unique NameCK933941
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length542
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933941 vs. ExPASy Swiss-Prot
Match: CHMO_ARATH (Choline monooxygenase, chloroplastic OS=Arabidopsis thaliana GN=At4g29890 PE=2 SV=2)

HSP 1 Score: 225.713 bits (574), Expect = 1.096e-58
Identity = 106/153 (69.28%), Postives = 129/153 (84.31%), Query Frame = 1
Query:    4 HVPYAHKGLASGLQLDSYSTTLYEKVSVQRCESGSTEGTDDTHRLGSKAFYAFIYPNFMINRYGPWMDTNLVIPLGPTRCEVVFDYFLDGSLMDDKAFIEQSLKDSEQVQIEDIILCEGVQRGLESPAYCSGRYAPSVEQAMYHFHSLLYCNL 462
            HVPYAHKGL SGL L++YSTT++EKVS+Q C  GS  G D   RLGS+A YAF+YPNFMINRYGPWMDTNLV+PLGP +C+VVFDYFLD SL DD+AFI++SL++S++VQ+ED++LCE VQRGLES AY  GRYA  VE+ M+HFH LL+ NL
Sbjct:  269 HVPYAHKGLMSGLDLETYSTTIFEKVSIQECGGGSKVGEDGFDRLGSEALYAFVYPNFMINRYGPWMDTNLVLPLGPRKCKVVFDYFLDPSLKDDEAFIKRSLEESDRVQMEDVMLCESVQRGLESQAYDKGRYA-LVEKPMHHFHCLLHHNL 420          
BLAST of CK933941 vs. ExPASy Swiss-Prot
Match: CHMO_AMATR (Choline monooxygenase, chloroplastic OS=Amaranthus tricolor GN=CMO PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 2.219e-43
Identity = 82/153 (53.59%), Postives = 111/153 (72.55%), Query Frame = 1
Query:    4 HVPYAHKGLASGLQLDSYSTTLYEKVSVQRCESGSTEGTDDTHRLGSKAFYAFIYPNFMINRYGPWMDTNLVIPLGPTRCEVVFDYFLDGSLMDDKAFIEQSLKDSEQVQIEDIILCEGVQRGLESPAYCSGRYAPSVEQAMYHFHSLLYCNL 462
            HVPYAHK  A+ L  D+Y T L EKV +QR  S S +  +   RLGS+AFYAFIYPNF + RYGPWM T  + PLGP +C++V DY+L+ ++M+DK +IE+S+  ++ VQ ED++LCE VQRGLE+PAY SGRY   +E+ ++HFH  L+  L
Sbjct:  290 HVPYAHKYYAAELDFDTYKTDLLEKVVIQRVASSSNK-PNGFDRLGSEAFYAFIYPNFAVERYGPWMTTMHIGPLGPRKCKLVVDYYLENAMMNDKPYIEKSIMINDNVQKEDVVLCESVQRGLETPAYRSGRYVMPIEKGIHHFHCWLHQTL 441          
BLAST of CK933941 vs. ExPASy Swiss-Prot
Match: CHMO_SPIOL (Choline monooxygenase, chloroplastic OS=Spinacia oleracea GN=CMO PE=1 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 4.184e-42
Identity = 77/149 (51.68%), Postives = 107/149 (71.81%), Query Frame = 1
Query:    4 HVPYAHKGLASGLQLDSYSTTLYEKVSVQRCESGSTEGTDDTHRLGSKAFYAFIYPNFMINRYGPWMDTNLVIPLGPTRCEVVFDYFLDGSLMDDKAFIEQSLKDSEQVQIEDIILCEGVQRGLESPAYCSGRYAPSVEQAMYHFHSLL 450
            HVPYAHK  A+ L  D+Y T + E V++QR E GS+   D   R+G +AFYAF YPNF + RYGPWM T  + PLGP +C++V DY+++ S++DDK +IE+ +  ++ VQ ED++LCE VQRGLE+PAY SGRY   +E+ ++HFH  L
Sbjct:  287 HVPYAHKYYATELNFDTYDTQMIENVTIQRVE-GSSNKPDGFDRVGIQAFYAFAYPNFAVERYGPWMTTMHIHPLGPRKCKLVVDYYIENSMLDDKDYIEKGIAINDNVQREDVVLCESVQRGLETPAYRSGRYVMPIEKGIHHFHCWL 434          
BLAST of CK933941 vs. ExPASy Swiss-Prot
Match: CHMO_BETVU (Choline monooxygenase, chloroplastic OS=Beta vulgaris GN=CMO PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.346e-40
Identity = 76/150 (50.67%), Postives = 108/150 (72.00%), Query Frame = 1
Query:    4 HVPYAHKGLASGLQLDSYSTTLYEKVSVQRCESGSTEGTDDTHRLGSKAFYAFIYPNFMINRYGPWMDTNLVIPLGPTRCEVVFDYFLDGSLMDDKAFIEQSLKDSEQVQIEDIILCEGVQRGLESPAYCSGRYAPSVEQAMYHFHSLLY 453
            HVPYAHK  A+ L  D+Y+T + EK  +QR  S S +  D   RLG++AFYAFIYPNF + RYG WM T  V+P+G  +C++V DY+L+ +++DDKA+I++ +  ++ VQ ED +LCE VQRGLE+PAY SGRY   +E+ ++HFH  L+
Sbjct:  294 HVPYAHKYYAAELDFDTYNTEMIEKCVIQRVGSSSNK-PDGFDRLGTEAFYAFIYPNFAVERYGTWMTTMHVVPMGQRKCKLVVDYYLEKAMLDDKAYIDKGIAINDNVQKEDKVLCESVQRGLETPAYRSGRYVMPIEKGIHHFHCWLH 442          
BLAST of CK933941 vs. ExPASy Swiss-Prot
Match: CHMO_ATRHO (Choline monooxygenase, chloroplastic OS=Atriplex hortensis GN=CMO PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.346e-40
Identity = 74/150 (49.33%), Postives = 106/150 (70.67%), Query Frame = 1
Query:    4 HVPYAHKGLASGLQLDSYSTTLYEKVSVQRCESGSTEGTDDTHRLGSKAFYAFIYPNFMINRYGPWMDTNLVIPLGPTRCEVVFDYFLDGSLMDDKAFIEQSLKDSEQVQIEDIILCEGVQRGLESPAYCSGRYAPSVEQAMYHFHSLLY 453
            HVPYAHK  A+ L  D+Y T +   V++QR    S  G +   RLG++AFYAF YPNF + RYGPWM T  ++PLGP +C++V DY+++ S +DDK +IE+ +  ++ VQ ED++LCE VQ+GLE+PAY SGRY   +E+ ++HFH  L+
Sbjct:  288 HVPYAHKYYATELDFDTYQTDMVGNVTIQRVAGTSNNGFN---RLGTQAFYAFAYPNFAVERYGPWMTTMHIVPLGPRKCKLVVDYYIEKSKLDDKDYIEKGIAINDNVQKEDVVLCESVQKGLETPAYRSGRYVMPIEKGIHHFHCWLH 434          
The following BLAST results are available for this feature:
BLAST of CK933941 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
CHMO_ARATH1.096e-5869.28Choline monooxygenase, chloroplastic OS=Arabidopsi... [more]
CHMO_AMATR2.219e-4353.59Choline monooxygenase, chloroplastic OS=Amaranthus... [more]
CHMO_SPIOL4.184e-4251.68Choline monooxygenase, chloroplastic OS=Spinacia o... [more]
CHMO_BETVU1.346e-4050.67Choline monooxygenase, chloroplastic OS=Beta vulga... [more]
CHMO_ATRHO1.346e-4049.33Choline monooxygenase, chloroplastic OS=Atriplex h... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004543_C11 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IIF_C11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933941 ID=CK933941; Name=CK933941; organism=Citrus sinensis; type=EST; length=542bp
GGGCATGTTCCATATGCACATAAAGGCCTTGCATCTGGTCTTCAGCTGGA
TTCTTACTCAACAACGTTATATGAAAAGGTTAGCGTCCAAAGATGTGAAA
GTGGCTCTACAGAAGGCACAGATGATACCCATCGCCTTGGATCTAAAGCG
TTTTATGCTTTCATATATCCAAACTTCATGATTAATCGCTATGGACCTTG
GATGGACACCAATCTGGTGATTCCTCTCGGACCTACAAGATGCGAAGTGG
TGTTTGACTACTTTCTCGATGGTTCTTTGATGGACGACAAAGCTTTTATA
GAGCAAAGCCTTAAAGATAGTGAGCAAGTGCAGATAGAAGACATTATTCT
TTGTGAAGGTGTCCAGAGGGGCCTTGAATCTCCAGCATATTGTAGCGGCA
GGTATGCACCCTCTGTCGAACAAGCCATGTACCATTTCCATTCTCTACTA
TATTGTAACCTTACGAACTAGTTCACATTTTGTTCCAATCCCATAAATTC
CAATTAAGATTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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