CK933973

Overview
NameCK933973
Unique NameCK933973
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length594
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13461 contig Csv1_Contig13461:1..590. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CK933973 vs. ExPASy Swiss-Prot
Match: POP3_ARATH (Probable protein Pop3 OS=Arabidopsis thaliana GN=At3g17210 PE=1 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 1.780e-42
Identity = 80/106 (75.47%), Postives = 96/106 (90.57%), Query Frame = 1 
Query:   40 MEEAKGVVKHVLLAKFKEGTAQDQIDQLIKDHANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEYVAHPAHVEYANLFLANLEKVLVIDYKPTT 357
            MEEAKG VKHVLLA FK+G + ++I++LIK +ANLVNLIEPMK+F WGK+VSIENLHQG+THIFESTFES E VAEY+AHPAHVE+A +FL +L+KVLVIDYKPT+
Sbjct:    1 MEEAKGPVKHVLLASFKDGVSPEKIEELIKGYANLVNLIEPMKAFHWGKDVSIENLHQGYTHIFESTFESKEAVAEYIAHPAHVEFATIFLGSLDKVLVIDYKPTS 106
[Close]
BLAST of CK933973 vs. ExPASy Swiss-Prot
Match: Y5258_ARATH (Uncharacterized protein At5g22580 OS=Arabidopsis thaliana GN=At5g22580 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.285e-16
Identity = 39/95 (41.05%), Postives = 67/95 (70.53%), Query Frame = 1 
Query:   64 KHVLLAKFKEGTAQDQIDQLIKDHANLVNLIEPMKSFQWGKNV-SIENLHQGFTHIFESTFESTEGVAEYVAHPAHVEYANLFLANLEKVLVIDY 345
            KH+++ KFKE T   ++D+++K   NLV+ I+ +KSF+WG++  S + L QGFTH F  TFE+ +G   + +HP HVE++  F A ++K++++D+
Sbjct:    7 KHLVVVKFKEDT---KVDEILKGLENLVSQIDTVKSFEWGEDKESHDMLRQGFTHAFSMTFENKDGYVAFTSHPLHVEFSAAFTAVIDKIVLLDF 98
The following BLAST results are available for this feature:
BLAST of CK933973 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
POP3_ARATH1.780e-4275.47Probable protein Pop3 OS=Arabidopsis thaliana GN=A... [more]
Y5258_ARATH1.285e-1641.05Uncharacterized protein At5g22580 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004542_H06 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IVF_H06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933973 ID=CK933973; Name=CK933973; organism=Citrus sinensis; type=EST; length=594bp
GGGGGCAGCGGATGAAAGCCGAAACGTAAGGGCAGAGATATGGAAGAAGC
TAAAGGAGTGGTGAAGCACGTACTTCTGGCCAAGTTCAAAGAAGGGACTG
CTCAAGATCAAATTGATCAGCTCATCAAAGACCATGCAAATCTTGTGAAT
CTCATTGAACCCATGAAGTCTTTCCAATGGGGCAAGAATGTGAGCATTGA
GAATCTTCATCAGGGTTTCACTCATATTTTTGAATCTACCTTTGAGAGCA
CAGAGGGTGTTGCAGAGTATGTAGCTCATCCAGCACATGTTGAATACGCA
AACTTGTTCCTGGCCAACTTGGAGAAAGTTCTCGTGATTGACTACAAACC
GACAACTGTACGTGTCTGAGTTGTACTAGTAGGGAAGTGATCAGTCTTCC
ATGTGGTTGTTATTTGAATATTGTGTCCGTTTTCTTGAACAATATTGGGT
GACTTCATTTGTATGTGAAATTGATGGTGGTGAAACCCAAGAGTTTATGT
ATTTGGATATAATGATATGACAATAAGGGTAGTTTGAATACTCTCATATT
TATAGATTTTCCTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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