CK933996

Overview
NameCK933996
Unique NameCK933996
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length918
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK933996_ssr27 microsatellite CK933996_ssr27:27..62. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9766 contig Csv1_Contig9766:2..919. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933996 vs. ExPASy Swiss-Prot
Match: 21KD_DAUCA (21 kDa protein OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 6.474e-34
Identity = 78/187 (41.71%), Postives = 120/187 (64.17%), Query Frame = 3
Query:   96 ALLIILLQFSTNLASNPSDNSNIEYIRTSCSGTIYRRLCYRSLSVYAAKIKSNPKTLANTALNITLKATKSTSRMMVKMSRFPGMIPRETAGAVADCIEVIGDSIDELQDSMDE---LGHIRNSNFWLTMGDVQTWVSAALTDEDTCVDGLQGRPLNRYTKTMIRRHILKVAHLTSNALALINSYAA 647
            ALL+IL   S   A+        ++I+TSC+ T Y  +C +SLS YA  I++NP+ LA+TAL ++L  T+     M ++++F G+  R+ A A+ DC+E + DS+D +  S DE   L H + ++F   M +V+TWVSAALTDE TC+DG  G+ ++   K  +R  ++ VA +TSNALAL+N++AA
Sbjct:   12 ALLVILAAASAAPAN--------QFIKTSCTLTTYPAVCEQSLSAYAKTIQNNPQELASTALQVSLTRTQQAQTFMKRLNKFKGLKARQYA-AIHDCLEEVEDSLDRVSRSCDEMKNLSHAKGNDFTFRMSNVETWVSAALTDETTCMDGFAGKGMDGKIKESVRAQVVAVARVTSNALALVNNFAA 189          
BLAST of CK933996 vs. ExPASy Swiss-Prot
Match: PME2_ARATH (Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 7.951e-16
Identity = 51/189 (26.98%), Postives = 104/189 (55.03%), Query Frame = 3
Query:   90 LVALLIILLQFSTNLASNPS----DNSNIEYIRTSCSGTIYRRLCYRSLSVYAAKIKSNPKTLANTALNITLKATKSTSRMMVKM-SRFPGMIPRETAGAVADCIEVIGDSIDELQDSMDELGHI-RNSNFWLTMGDVQTWVSAALTDEDTCVDGLQGRPLNRYTKTMIRRHILKVAHLTSNALALINS 638
            L+A ++ +   +TN   N       +++   +++ CS T+Y  LC+ +++    K  ++ K +   +LN+T KA K     + K+ ++  G+ PRE   A+ DC+E I +++DEL  ++++L    +  +      D++T +S+A+T++ TC+DG      +R  +  + +  + V H+ SNALA+I +
Sbjct:   31 LLASIVGIAATTTNQNKNQKITTLSSTSHAILKSVCSSTLYPELCFSAVAATGGKELTSQKEVIEASLNLTTKAVKHNYFAVKKLIAKRKGLTPREVT-ALHDCLETIDETLDELHVAVEDLHQYPKQKSLRKHADDLKTLISSAITNQGTCLDGFSYDDADRKVRKALLKGQVHVEHMCSNALAMIKN 218          
BLAST of CK933996 vs. ExPASy Swiss-Prot
Match: PME3_ARATH (Pectinesterase/pectinesterase inhibitor 3 OS=Arabidopsis thaliana GN=PME3 PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 5.154e-15
Identity = 54/198 (27.27%), Postives = 108/198 (54.55%), Query Frame = 3
Query:   78 LRHALVALLIILLQFSTNLASNPSDN------SNIEYIRTSCSGTIYRRLCYRSLSVYAAKIKSNPKTLANTALNITLKATKS---TSRMMVKMSRFPGMIPRETAGAVADCIEVIGDSIDELQDSMDELGHIRNSNFWLT--MGDVQTWVSAALTDEDTCVDGLQGRPLNRYTKTMIRRHILKVAHLTSNALALINS 638
            L  A VALL +      +  ++ ++       S+   +R+SCS T Y  LC  ++        ++ K +   ++N+T+ A +    T + ++K  +  G+ PRE   A+ DC+E I +++DEL +++++L H+  +   L    GD++T +S+A+T+++TC+DG      ++  +  + +  + V H+ SNALA+I +
Sbjct:   22 LLSAAVALLFVAAVAGISAGASKANEKRTLSPSSHAVLRSSCSSTRYPELCISAVVTAGGVELTSQKDVIEASVNLTITAVEHNYFTVKKLIKKRK--GLTPREKT-ALHDCLETIDETLDELHETVEDL-HLYPTKKTLREHAGDLKTLISSAITNQETCLDGFSHDDADKQVRKALLKGQIHVEHMCSNALAMIKN 215          
BLAST of CK933996 vs. ExPASy Swiss-Prot
Match: PME3_CITSI (Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.791e-15
Identity = 54/189 (28.57%), Postives = 99/189 (52.38%), Query Frame = 3
Query:   90 LVALLIILLQFSTNLASNPSDNSNIEY---IRTSCSGTIYRRLCYRSLSVY--AAKIKSNPKTLANTALNITLKATKSTSRMMVKMSRFPGMIPRETAGAVADCIEVIGDSIDELQDSMDELGHIRNS-NFWLTMGDVQTWVSAALTDEDTCVDGLQGRPLNRYTKTMIRRHILKVAHLTSNALALINS 638
            LV   +I +    N   N  DN N  +   +++SCS T Y  LC+ +++    A+K  ++ K +   +LNIT  A +     + K+ +   +  RE   A+ DC+E I +++DEL  ++++L    N  +      D++T +SAA+T++ TC+DG      N++ +  +    + V  + SNALA+I +
Sbjct:   39 LVVAAVIGIVAGVNSRKNSGDNGNEPHHAILKSSCSSTRYPDLCFSAIAAVPEASKKVTSQKDVIEMSLNITTTAVEHNYFGIQKLLKRTNLTKREKV-ALHDCLETIDETLDELHKAVEDLEEYPNKKSLSQHADDLKTLMSAAMTNQGTCLDGFSHDDANKHVRDALSDGQVHVEKMCSNALAMIKN 226          
BLAST of CK933996 vs. ExPASy Swiss-Prot
Match: PME1_CITSI (Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.791e-15
Identity = 54/189 (28.57%), Postives = 99/189 (52.38%), Query Frame = 3
Query:   90 LVALLIILLQFSTNLASNPSDNSNIEY---IRTSCSGTIYRRLCYRSLSVY--AAKIKSNPKTLANTALNITLKATKSTSRMMVKMSRFPGMIPRETAGAVADCIEVIGDSIDELQDSMDELGHIRNS-NFWLTMGDVQTWVSAALTDEDTCVDGLQGRPLNRYTKTMIRRHILKVAHLTSNALALINS 638
            LV   +I +    N   N  DN N  +   +++SCS T Y  LC+ +++    A+K  ++ K +   +LNIT  A +     + K+ +   +  RE   A+ DC+E I +++DEL  ++++L    N  +      D++T +SAA+T++ TC+DG      N++ +  +    + V  + SNALA+I +
Sbjct:   39 LVVAAVIGIVAGVNSRKNSGDNGNEPHHAILKSSCSSTRYPDLCFSAIAAVPEASKKVTSQKDVIEMSLNITTTAVEHNYFGIQKLLKRTNLTKREKV-ALHDCLETIDETLDELHKAVEDLEEYPNKKSLSQHADDLKTLMSAAMTNQGTCLDGFSHDDANKHVRDALSDGQVHVEKMCSNALAMIKN 226          
BLAST of CK933996 vs. ExPASy Swiss-Prot
Match: PMEU1_SOLLC (Pectinesterase/pectinesterase inhibitor U1 OS=Solanum lycopersicum GN=PMEU1 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.824e-13
Identity = 52/194 (26.80%), Postives = 108/194 (55.67%), Query Frame = 3
Query:   90 LVALLIILLQFSTNLASNPSDNSNI--------EYIRTSCSGTIYRRLCYRSL---SVYAAKIKSNPKTLANTALNITLKATKSTSRMMVKMSRF-PGMIPRETAGAVADCIEVIGDSIDELQDSMDELGHIRNSNFWLT-MGDVQTWVSAALTDEDTCVDGLQGRPLNRYTKTMIRRHILKVAHLTSNALALI 632
            LVA +I ++    + + N  D+++I          ++++CS T++  LCY ++   S ++ K+ S  K +   +LNIT+KA +     + ++ +   G+ PRE   A+ DC+E + +++DEL  ++++L    N       + D++T +S+A+T+++TC+DG      ++  + ++ +    V  + SNALA+I
Sbjct:   31 LVAAVIGVVAGVKSHSKNSDDHADIMAISSSAHAIVKSACSNTLHPELCYSAIVNVSDFSKKVTSQ-KDVIELSLNITVKAVRRNYYAVKELIKTRKGLTPREKV-ALHDCLETMDETLDELHTAVEDLELYPNKKSLKEHVEDLKTLISSAITNQETCLDGFSHDEADKKVRKVLLKGQKHVEKMCSNALAMI 222          
BLAST of CK933996 vs. ExPASy Swiss-Prot
Match: PME28_ARATH (Putative pectinesterase/pectinesterase inhibitor 28 OS=Arabidopsis thaliana GN=PME28 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.333e-12
Identity = 55/190 (28.95%), Postives = 90/190 (47.37%), Query Frame = 3
Query:   93 VALLIILLQFSTNLASNPSDNSNIEYIRTS-------CSGTIYRRLCYRSLSVYAAKIKSNPKTLANTALNITLKATKST---SRMMVKMSRFPGMIPRETAGAVADCIEVIGDSIDELQDSMDELGHIRNSNFWLTMGDVQTWVSAALTDEDTCVDGLQGRPLNRYTKTMIRRHILKVAHLTSNALALI 632
            V L+ +++  +  ++ N SDN+  E I TS       C+ T Y+  C  +L    AK  S+P  L  TA N T+K        S+ M+++ + P         A+  C E++  +I EL  S +ELG          +  ++ W+SA ++ E TC+DG QG   N      I++ +     LT N LA++
Sbjct:   24 VLLISMVVAVTIGVSVNKSDNAGDEEITTSVKAIKDVCAPTDYKETCEDTLRK-DAKDTSDPLELVKTAFNATMKQISDVAKKSQTMIELQKDP-----RAKMALDQCKELMDYAIGELSKSFEELGKFEFHKVDEALVKLRIWLSATISHEQTCLDGFQGTQGN--AGETIKKALKTAVQLTHNGLAMV 205          
BLAST of CK933996 vs. ExPASy Swiss-Prot
Match: PME21_ARATH (Probable pectinesterase/pectinesterase inhibitor 21 OS=Arabidopsis thaliana GN=PME21 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 2.027e-11
Identity = 47/166 (28.31%), Postives = 87/166 (52.41%), Query Frame = 3
Query:  153 NSNIEYIRTSCSGTIYRRLCYRSLSVYAAKIKSNPKTLANTALNITLK-----ATKSTSRMMVKMSRFPGMIPRETAGAVADCIEVIGDSIDELQDSMDELGHIRNSNFWLTMGDVQTWVSAALTDEDTCVDGLQGRPLNRYTKTMIRRHILKVAHLTSNALALIN 635
            N++++ ++  C+ T YR+ C  +L +   K  ++P  L  TA N+T+K     A KS + M ++           T  A+  C E++  ++DEL +S +ELG          + +++ W+SAA++ E+TC++G QG   N      +++ +     LT N LA+I+
Sbjct:   52 NASVKAVKDVCAPTDYRKTCEDTL-IKNGKNTTDPMELVKTAFNVTMKQITDAAKKSQTIMELQKDS-------RTRMALDQCKELMDYALDELSNSFEELGKFEFHLLDEALINLRIWLSAAISHEETCLEGFQGTQGN--AGETMKKALKTAIELTHNGLAIIS 207          
The following BLAST results are available for this feature:
BLAST of CK933996 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
21KD_DAUCA6.474e-3441.7121 kDa protein OS=Daucus carota PE=2 SV=1[more]
PME2_ARATH7.951e-1626.98Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 P... [more]
PME3_ARATH5.154e-1527.27Pectinesterase/pectinesterase inhibitor 3 OS=Arabi... [more]
PME3_CITSI8.791e-1528.57Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1[more]
PME1_CITSI8.791e-1528.57Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE... [more]
PMEU1_SOLLC4.824e-1326.80Pectinesterase/pectinesterase inhibitor U1 OS=Sola... [more]
PME28_ARATH5.333e-1228.95Putative pectinesterase/pectinesterase inhibitor 2... [more]
PME21_ARATH2.027e-1128.31Probable pectinesterase/pectinesterase inhibitor 2... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004542_G07 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IVF_G07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933996 ID=CK933996; Name=CK933996; organism=Citrus sinensis; type=EST; length=918bp
GGGATATACGAATCTATTTCTTTCTGGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAATGGAAGGTTCATTTTTGAGGCATGCACTAGTAGCCCT
GCTCATAATTCTCCTTCAATTCTCCACCAACTTAGCCTCAAACCCATCAG
ATAATTCAAACATAGAGTACATAAGAACATCATGTAGTGGCACAATCTAT
CGCAGGTTGTGCTACCGCTCACTCTCAGTCTATGCAGCCAAAATCAAAAG
CAACCCCAAAACATTAGCCAACACAGCTCTCAACATAACCCTTAAAGCCA
CAAAATCAACGTCGAGAATGATGGTCAAGATGTCGAGATTCCCCGGCATG
ATCCCGAGGGAGACCGCAGGGGCAGTGGCAGATTGCATTGAGGTGATCGG
TGACTCAATAGATGAGCTCCAAGATTCTATGGACGAACTGGGTCACATCA
GGAACTCGAATTTTTGGCTCACAATGGGTGATGTCCAAACATGGGTAAGC
GCAGCGTTAACGGATGAAGATACTTGCGTGGATGGGCTTCAAGGTAGGCC
CTTGAACAGATATACGAAGACGATGATCAGGAGGCATATTCTTAAAGTTG
CACATTTGACAAGCAACGCCTTGGCTCTCATAAATAGTTATGCCGCTGGC
AGTAACCCTCCATCTCCCTAAAGGGATCGGATCAAAGCCATTCTAGATCA
CTAATTAGAAACGCTCTTTCATGCTACTTCATATAGCGTTGTCCTGTATA
TTTTCGTATCCTTAATTTGTGTCAGACTCAAGAGTGTCGGTCGGTTTTAA
TTATCCTATTTCTTTGAGATATATTTACATGTGTATAGGACAAAATTGCC
ATAGGGCTAGCGTGGATTGCAAGCTGATATGTGTGTGATATACTGTTACT
GTAATTTTCTATGTCTAT
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