CK934007

Overview
NameCK934007
Unique NameCK934007
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length474
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934007 vs. ExPASy Swiss-Prot
Match: NIP1_NICAL (Probable aquaporin NIP-type OS=Nicotiana alata PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.669e-14
Identity = 37/68 (54.41%), Postives = 48/68 (70.59%), Query Frame = -2
Query:  231 HIYFCRPITGASMNPARSIGPAVVSGVYKNLWVYIVAPIIGALAAAMVYSILR-VPKPVAEKPEETKS 431
            +++   PI+GASMNPARSIGPA+V  VY  LWVY+V PIIG LA A VY+++R   KP+ E  +   S
Sbjct:  200 NVFVAGPISGASMNPARSIGPAIVKHVYTGLWVYVVGPIIGTLAGAFVYNLIRSTDKPLRELAKSASS 267          
BLAST of CK934007 vs. ExPASy Swiss-Prot
Match: NIP41_ARATH (Putative aquaporin NIP4-1 OS=Arabidopsis thaliana GN=NIP4-1 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.014e-13
Identity = 32/61 (52.46%), Postives = 48/61 (78.69%), Query Frame = -2
Query:  252 HIYFCRPITGASMNPARSIGPAVVSGVYKNLWVYIVAPIIGALAAAMVYSILR-VPKPVAE 431
            +++   PI+GASMNPARS+GPA+V GVYK++WVYIV P++G ++   VY+++R   KP+ E
Sbjct:  201 NVFVAGPISGASMNPARSLGPALVMGVYKHIWVYIVGPVLGVISGGFVYNLIRFTDKPLRE 261          
BLAST of CK934007 vs. ExPASy Swiss-Prot
Match: NIP31_ARATH (Aquaporin NIP3-1 OS=Arabidopsis thaliana GN=NIP3-1 PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 1.014e-13
Identity = 34/55 (61.82%), Postives = 44/55 (80.00%), Query Frame = -2
Query:  264 IYFCRPITGASMNPARSIGPAVVSGVYKNLWVYIVAPIIGALAAAMVYSILRVPK 428
            I F  PI+GASMNPARS+GPA++ G YK+LW+YIV+P+IGAL+ A  Y +LR  K
Sbjct:  209 ILFSGPISGASMNPARSLGPALIWGCYKDLWLYIVSPVIGALSGAWTYGLLRSTK 263          
BLAST of CK934007 vs. ExPASy Swiss-Prot
Match: NO26_SOYBN (Nodulin-26 OS=Glycine max PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 1.730e-13
Identity = 32/55 (58.18%), Postives = 46/55 (83.64%), Query Frame = -2
Query:  252 PITGASMNPARSIGPAVVSGVYKNLWVYIVAPIIGALAAAMVYSILR-VPKPVAE 413
            P+TGASMNPARS+GPA V G Y+ +W+Y++AP++GA+A A VY+I+R   KP++E
Sbjct:  202 PVTGASMNPARSLGPAFVHGEYEGIWIYLLAPVVGAIAGAWVYNIVRYTDKPLSE 256          
BLAST of CK934007 vs. ExPASy Swiss-Prot
Match: NIP11_MAIZE (Aquaporin NIP1-1 OS=Zea mays GN=NIP1-1 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.951e-13
Identity = 32/66 (48.48%), Postives = 49/66 (74.24%), Query Frame = -2
Query:  237 HIYFCRPITGASMNPARSIGPAVVSGVYKNLWVYIVAPIIGALAAAMVYSILR-VPKPVAEKPEET 431
            ++    P++GASMNPARS+GPA+VSG Y ++WVY+V P++GA+A A  Y+++R   KP+ E  + T
Sbjct:  202 NVLIAGPVSGASMNPARSVGPALVSGEYTSIWVYVVGPVVGAVAGAWAYNLIRFTNKPLREITKST 267          
BLAST of CK934007 vs. ExPASy Swiss-Prot
Match: NIP11_ORYSJ (Aquaporin NIP1-1 OS=Oryza sativa subsp. japonica GN=NIP1-1 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.121e-12
Identity = 32/61 (52.46%), Postives = 46/61 (75.41%), Query Frame = -2
Query:  252 HIYFCRPITGASMNPARSIGPAVVSGVYKNLWVYIVAPIIGALAAAMVYSILR-VPKPVAE 431
            ++    PI+GASMNPARS+GPA++ G Y+++WVYIV P+ GA+A A  Y+I+R   KP+ E
Sbjct:  206 NVLIAGPISGASMNPARSLGPAMIGGEYRSIWVYIVGPVAGAVAGAWAYNIIRFTNKPLRE 266          
BLAST of CK934007 vs. ExPASy Swiss-Prot
Match: NIP42_ARATH (Probable aquaporin NIP4-2 OS=Arabidopsis thaliana GN=NIP4-2 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.465e-12
Identity = 32/61 (52.46%), Postives = 43/61 (70.49%), Query Frame = -2
Query:  252 HIYFCRPITGASMNPARSIGPAVVSGVYKNLWVYIVAPIIGALAAAMVYSILR-VPKPVAE 431
            +++   PI+GASMNPARS+GPA+V G YK +WVYIV P +G  A   VY+ +R   KP+ E
Sbjct:  201 NVFVAGPISGASMNPARSLGPAIVMGRYKGIWVYIVGPFVGIFAGGFVYNFMRFTDKPLRE 261          
BLAST of CK934007 vs. ExPASy Swiss-Prot
Match: NIP13_ORYSJ (Aquaporin NIP1-3 OS=Oryza sativa subsp. japonica GN=NIP1-3 PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 3.263e-12
Identity = 31/61 (50.82%), Postives = 44/61 (72.13%), Query Frame = -2
Query:  252 HIYFCRPITGASMNPARSIGPAVVSGVYKNLWVYIVAPIIGALAAAMVYSILR-VPKPVAE 431
            ++ F  PI+GASMNPAR+IGPA++ G Y  +WVYI  P+ GA+A A  Y+++R   KP+ E
Sbjct:  212 NVLFAGPISGASMNPARTIGPAIILGRYTGIWVYIAGPVFGAVAGAWAYNLIRFTDKPLRE 272          
BLAST of CK934007 vs. ExPASy Swiss-Prot
Match: NIP51_ARATH (Probable aquaporin NIP5-1 OS=Arabidopsis thaliana GN=NIP5-1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.566e-12
Identity = 31/67 (46.27%), Postives = 46/67 (68.66%), Query Frame = -2
Query:  231 HIYFCRPITGASMNPARSIGPAVVSGVYKNLWVYIVAPIIGALAAAMVYSILRVPKPVAEKPEETKS 431
            +I    P TG SMNP R++GPAV SG Y++LWVY+VAP +GA++ A VY+ +++   V + P   +S
Sbjct:  235 NILVAGPSTGGSMNPVRTLGPAVASGNYRSLWVYLVAPTLGAISGAAVYTGVKLNDSVTDPPRPVRS 301          
BLAST of CK934007 vs. ExPASy Swiss-Prot
Match: NIP12_ARATH (Aquaporin NIP1-2 OS=Arabidopsis thaliana GN=NIP1-2 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 7.269e-12
Identity = 30/61 (49.18%), Postives = 46/61 (75.41%), Query Frame = -2
Query:  252 HIYFCRPITGASMNPARSIGPAVVSGVYKNLWVYIVAPIIGALAAAMVYSILR-VPKPVAE 431
            ++    P++GASMNP RS+GPA+V   Y+ LW+YIV+PI+GA++ A VY+++R   KP+ E
Sbjct:  217 NVIIAGPVSGASMNPGRSLGPAMVYSCYRGLWIYIVSPIVGAVSGAWVYNMVRYTDKPLRE 277          
The following BLAST results are available for this feature:
BLAST of CK934007 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
NIP1_NICAL2.669e-1454.41Probable aquaporin NIP-type OS=Nicotiana alata PE=... [more]
NIP41_ARATH1.014e-1352.46Putative aquaporin NIP4-1 OS=Arabidopsis thaliana ... [more]
NIP31_ARATH1.014e-1361.82Aquaporin NIP3-1 OS=Arabidopsis thaliana GN=NIP3-1... [more]
NO26_SOYBN1.730e-1358.18Nodulin-26 OS=Glycine max PE=1 SV=2[more]
NIP11_MAIZE2.951e-1348.48Aquaporin NIP1-1 OS=Zea mays GN=NIP1-1 PE=2 SV=1[more]
NIP11_ORYSJ1.121e-1252.46Aquaporin NIP1-1 OS=Oryza sativa subsp. japonica G... [more]
NIP42_ARATH1.465e-1252.46Probable aquaporin NIP4-2 OS=Arabidopsis thaliana ... [more]
NIP13_ORYSJ3.263e-1250.82Aquaporin NIP1-3 OS=Oryza sativa subsp. japonica G... [more]
NIP51_ARATH5.566e-1246.27Probable aquaporin NIP5-1 OS=Arabidopsis thaliana ... [more]
NIP12_ARATH7.269e-1249.18Aquaporin NIP1-2 OS=Arabidopsis thaliana GN=NIP1-2... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004542_E02 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IVF_E02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934007 ID=CK934007; Name=CK934007; organism=Citrus sinensis; type=EST; length=474bp
CTGAAAAGAGGAAAGAAAATTATATATGGATTCATGCTGAGTGAAAAGAC
CTACACAAGCTTGCTGAGATGAAAAACGTACATTGATTTATGATATCTGA
TAACATTAGGCAGAGGCTTAAAGTAAACTAATTTTGGACACGCAGCATCA
TTCCTCTGGCGCTTATGGGCAGCAGAGCAGAGAAACTGGTTAATCTATGG
GTCGGCATGAGGGTACAATTGATTTATTGTGCTTTTGGTCTCCTCAGGCT
TTTCAGCTACTGGCTTGGGTACTCTGAGTATGCTGTATACCATGGCTGCA
GCCAAGGCTCCGATGATGGGAGCAACGATATAAACCCAGAGATTCTTGTA
AACACCAGAGACCACAGCAGGACCTATGCTTCTTGCAGGGTTCATTGAAG
CTCCAGTAATTGGCCTGCAGAAATATATGTGATAACCAAATTTATAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA
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