CK934008

Overview
NameCK934008
Unique NameCK934008
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length605
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1296 contig Csv1_Contig1296:702..1306. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934008 vs. ExPASy Swiss-Prot
Match: ASP_THECC (21 kDa seed protein OS=Theobroma cacao GN=ASP PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.281e-27
Identity = 65/184 (35.33%), Postives = 103/184 (55.98%), Query Frame = 3
Query:   60 TTLPFLILALASNSLLVLGTSSFPEPLLDVHGNKVESTIKYYIVSAIWXXXXXXXXXXXXXXXYCPLDVIQLPSDMQNGIELTLSPYNNST-IVRESTDLNLRFSVLLSGRD-YCNEQPLWKVDNYDAASGKWFITTGGLDGHPGAETLLNWFKLEKIGNFPGIYKIVHCPSVCESCVKLCTTL 605
            T +  L+ A  S S      ++   P+LD  G+++++ ++YY++S+I                 CP  V+Q  SD+ NG  +  S  ++   +VR STD+N+ F  +   RD  C+   +W++DNYD ++GKW++TT G+ G PG  TL +WFK+EK G     YK   CPSVC+SC  LC+ +
Sbjct:    5 TAVVLLLFAFTSKSYFFGVANAANSPVLDTDGDELQTGVQYYVLSSISGAGGGGLALGRATGQSCPEIVVQRRSDLDNGTPVIFSNADSKDDVVRVSTDVNIEFVPI---RDRLCSTSTVWRLDNYDNSAGKWWVTTDGVKGEPGPNTLCSWFKIEKAGVLG--YKFRFCPSVCDSCTTLCSDI 183          
BLAST of CK934008 vs. ExPASy Swiss-Prot
Match: MIRA_RICDU (Miraculin OS=Richadella dulcifica PE=1 SV=3)

HSP 1 Score: 112.464 bits (280), Expect = 1.732e-24
Identity = 65/186 (34.95%), Postives = 98/186 (52.69%), Query Frame = 3
Query:   48 ISLTTTLPFLILALASNSLLVLGTSSFPEPLLDVHGNKVESTIKYYIVSAI--WXXXXXXXXXXXXXXXYCPLDVIQLPSDMQNGIELTLSPYN-NSTIVRESTDLNLRFSVLLSGRDYCNEQPLWKVDNYDAASGKWFITTGGLDGHPGAETLLNWFKLEKIGNFPGIYKIVHCPSVCESCVKLC 596
            +SL+      +LA A+N LL    S+ P P+LD+ G K+ +   YYIV  +                   CP  V+Q   ++ +   L   P N    +VR STDLN+ FS  +  R       +W++D YD ++G++F+T GG+ G+PG ET+ +WFK+E+     G YK+V CP+VC SC   C
Sbjct:    7 LSLSFFFVSALLAAAANPLLSAADSA-PNPVLDIDGEKLRTGTNYYIVPVLRDHGGGLTVSATTPNGTFVCPPRVVQTRKEVDHDRPLAFFPENPKEDVVRVSTDLNINFSAFMPCR--WTSSTVWRLDKYDESTGQYFVTIGGVKGNPGPETISSWFKIEEFCG-SGFYKLVFCPTVCGSCKVKC 188          
BLAST of CK934008 vs. ExPASy Swiss-Prot
Match: LSPI_CARPA (Latex serine proteinase inhibitor OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.567e-17
Identity = 55/150 (36.67%), Postives = 77/150 (51.33%), Query Frame = 3
Query:  129 PEPLLDVHGNKVESTIKYYIVSAIWXXXXXXXXXXXXXXXY-CPLDVIQLPSDMQNGIELTLSPYNN--STIVRESTDLNLRFSVLLSGRDYCNEQPLWKVDNYDAASGKWFITTGGLDGHPGAETLLNWFKLEKIGNFPGIYKIVHCPS 569
            P+P++D+ G  V   + Y++VSAIW                 CPL V+Q P D  NG  +  S   N    IV ES DLN++F++ ++    CNE   WKVD +    G W +T GG  G+ G E+  + FK++K G  P  YK   CPS
Sbjct:    3 PKPIVDIDGKPVLYGVDYFVVSAIWGAGGGGLTVYGPGNKKKCPLSVVQDPFD--NGEPIIFSAIKNVKDNIVFESVDLNVKFNITIN----CNETTAWKVDRFPGVIG-WTVTLGGEKGYHGFESTHSMFKIKKAG-LPFSYKFHFCPS 144          
BLAST of CK934008 vs. ExPASy Swiss-Prot
Match: SPORB_IPOBA (Sporamin B OS=Ipomoea batatas GN=GSPO-B1 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.343e-11
Identity = 48/159 (30.19%), Postives = 74/159 (46.54%), Query Frame = 3
Query:  117 TSSFPEPLLDVHGNKVESTIKYYIVSAIW--XXXXXXXXXXXXXXXYCPLDVIQLPSDMQNGIELTLSPYN-NSTIVRESTDLNLRFSVLLSGRDYCNEQPLWKVDNYDAASGKWFITTGGLDGHPGAETLLNWFKLEKIGNFPGIYKIVHCPSVCESC 584
            T+S   P+LD++G++V +   YYIVSAIW                  C  DVI   SD  NG  +T++P +  +T+V  ST    RF++  +    C     W +  +D+ SG++F+  G            N FK+E + +    YKI +C    E C
Sbjct:   34 TASSETPVLDINGDEVRAGENYYIVSAIWGAGGGGLRLVRLDSSSNECASDVIVSRSDFDNGDPITITPADPEATVVMPSTYQTFRFNI--ATNKLCVNNVNWGI-KHDSESGQYFVKAGEF-----VSDNSNQFKIEVVNDNLNAYKISYCQFGTEKC 184          
The following BLAST results are available for this feature:
BLAST of CK934008 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
ASP_THECC1.281e-2735.3321 kDa seed protein OS=Theobroma cacao GN=ASP PE=2... [more]
MIRA_RICDU1.732e-2434.95Miraculin OS=Richadella dulcifica PE=1 SV=3[more]
LSPI_CARPA4.567e-1736.67Latex serine proteinase inhibitor OS=Carica papaya... [more]
SPORB_IPOBA8.343e-1130.19Sporamin B OS=Ipomoea batatas GN=GSPO-B1 PE=2 SV=1[more]
back to top
Properties
Property NameValue
Genbank descriptionCGF1004542_E05 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IVF_E05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934008 ID=CK934008; Name=CK934008; organism=Citrus sinensis; type=EST; length=605bp
GGGGACGCATCAAANNNANATATAGCTTTGAAAACAACAAAATGAAGATT
TCATTAACAACAACACTCCCTTTCCTTATCCTTGCCTTGGCCTCAAACTC
TTTGTTGGTCTTGGGCACCTCATCATTTCCTGAACCTCTCCTTGATGTCC
ACGGGAACAAGGTCGAATCCACCATTAAGTACTACATAGTCTCAGCCATC
TGGGGAGCTAGCGGTGGTGGAGTTAGCCTACACGGTGGCAGAAACGGATA
TTGTCCGCTGGACGTTATCCAGTTACCTTCTGATATGCAAAATGGAATCG
AATTAACACTGTCACCGTATAACAATTCTACAATCGTCCGAGAATCCACT
GATCTCAACTTGAGATTCTCAGTGTTGCTATCTGGACGTGACTATTGTAA
CGAACAACCGTTGTGGAAAGTTGATAATTATGACGCGGCATCAGGCAAAT
GGTTTATAACAACCGGGGGACTTGATGGTCACCCTGGAGCTGAAACTTTG
CTAAATTGGTTTAAGCTTGAGAAAATTGGAAATTTTCCAGGTATATACAA
AATCGTTCATTGTCCATCCGTTTGCGAGTCTTGTGTCAAACTCTGCACAA
CGTTG
back to top