CK934047

Overview
NameCK934047
Unique NameCK934047
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length516
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CK934047 vs. ExPASy Swiss-Prot
Match: PROD_ARATH (Proline dehydrogenase, mitochondrial OS=Arabidopsis thaliana GN=POX PE=1 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 6.037e-40
Identity = 78/143 (54.55%), Postives = 105/143 (73.43%), Query Frame = 1 
Query:   91 RAAANLHLAAVEPLVDFGIWVMNSRLMDIDLAREVVMCTVRHSFYGHFCAGESAPEATDCVRRVNDA-GLRGMLVYAVEHTDDVSECEQNLQGFLQTVQSAKSLPPESASFVIAKISAICPMSLLQRVSDLLRWQQRDPSFNL 516
            R+ A LH AA+ P+VD G WVM+S+LMD  + R +V+  V+ +FY HFCAGE A  A + VR V +A GL+GMLVY VEH DD   C+ N+Q F++T+++AKSLP    S V+ KI+AICP+SLL+RVSDLLRW+ + P+F L
Sbjct:   82 RSTAVLHAAAIGPMVDLGTWVMSSKLMDASVTRGMVLGLVKSTFYDHFCAGEDADAAAERVRSVYEATGLKGMLVYGVEHADDAVSCDDNMQQFIRTIEAAKSLPTSHFSSVVVKITAICPISLLKRVSDLLRWEYKSPNFKL 224
The following BLAST results are available for this feature:
BLAST of CK934047 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PROD_ARATH6.037e-4054.55Proline dehydrogenase, mitochondrial OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004542_B02 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IVF_B02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934047 ID=CK934047; Name=CK934047; organism=Citrus sinensis; type=EST; length=516bp
AACCCGGCCGCGAACCGACTTGGCTCGTCGNNNTNNNNNNNNNAAGATCA
CGAAAAGCTGTTTTCTCTGCTTTCGACAACTAAGCTTACCCGTGCAGCTG
CGAACCTTCACCTGGCGGCTGTTGAGCCGCTGGTTGATTTCGGCATCTGG
GTTATGAATTCCAGGTTGATGGATATCGACTTGGCACGTGAAGTTGTGAT
GTGCACCGTTAGACACAGTTTTTATGGACATTTTTGTGCAGGTGAGAGCG
CTCCTGAGGCCACAGATTGCGTCAGGAGAGTTAATGACGCTGGTTTAAGA
GGCATGCTTGTGTATGCTGTTGAGCATACTGATGATGTCTCTGAGTGTGA
GCAGAATTTGCAGGGATTTCTCCAAACTGTTCAATCTGCCAAGTCTCTGC
CTCCGGAATCTGCTAGTTTTGTGATAGCGAAGATCTCAGCAATTTGTCCC
ATGAGCTTACTCCAGAGAGTGAGCGATTTGCTTAGATGGCAACAAAGAGA
CCCTTCATTTAATCTC
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