CK934049

Overview
NameCK934049
Unique NameCK934049
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length917
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5119 contig Csv1_Contig5119:16..932. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934049 vs. ExPASy Swiss-Prot
Match: S29A3_BOVIN (Equilibrative nucleoside transporter 3 OS=Bos taurus GN=SLC29A3 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.394e-12
Identity = 53/221 (23.98%), Postives = 90/221 (40.72%), Query Frame = 3
Query:  147 PPDTFHLAYIIYFTLGLGFLLPWNAFITAVDYFSYLYPEAS----------------VDRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINXXXXXXXXXXXXXXXXXXXYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIGAAGELPDRYMQALVAGTAGSGVLVSVLRILTKAVYTQDAIGLRKSANLYFAVGIVVMVICIVFYNVAHRLPVIKYH 761
            P D F+  YII+F+LG+G LLPWN F+TA +Y+ +     S                 +   AVA  +  + CL +     ++    +R+                     +      +  FT+T+  +A+      +    + G  G  P R  QAL++G A  G L +V  ++  AV    A  +  S   +F    + + +CI  Y +  RL   +Y+
Sbjct:   46 PEDRFNGTYIIFFSLGIGGLLPWNFFVTAQEYWIFKLSNCSSPAAGEEPKDSDILNYFESYLAVASTVPSVLCLALNFLLVNRVP--IRVRVLASLTVMLAIFIVMTVLVKVDTSSWTHSFFTITITCMAILSGTSTIFNSSVFGMTGSFPMRNSQALISGGAMGGTLSAVASLVDLAV----ASDVTDSTLAFFLTADIFLALCIGLYLLLPRLDYARYY 260          
BLAST of CK934049 vs. ExPASy Swiss-Prot
Match: S29A3_HUMAN (Equilibrative nucleoside transporter 3 OS=Homo sapiens GN=SLC29A3 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 5.333e-12
Identity = 57/221 (25.79%), Postives = 91/221 (41.18%), Query Frame = 3
Query:  147 PPDTFHLAYIIYFTLGLGFLLPWNAFITAVDYFSYLY-----------PEAS-----VDRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINXXXXXXXXXXXXXXXXXXXYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIGAAGELPDRYMQALVAGTAGSGVLVSVLRILTKAVYTQDAIGLRKSANLYFAVGIVVMVICIVFYNVAHRLPVIKYH 761
            P D F   YII+F+LG+G LLPWN FITA +Y+ +             PE S      +   AVA  +  + CLV      ++    +R+                     +         F VT+  + +   A  +    + G  G  P R  QAL++G A  G + +V  ++  A  +     +R SA  +F    V +V+C+  Y +  RL   +Y+
Sbjct:   46 PEDRFCGTYIIFFSLGIGSLLPWNFFITAKEYWMFKLRNSSSPATGEDPEGSDILNYFESYLAVASTVPSMLCLVANFLLVNRVAVHIRV--LASLTVILAIFMVITALVKVDTSSWTRGFFAVTIVCMVILSGASTVFSSSIYGMTGSFPMRNSQALISGGAMGGTVSAVASLVDLAASSD----VRNSALAFFLTATVFLVLCMGLYLLLSRLEYARYY 260          
The following BLAST results are available for this feature:
BLAST of CK934049 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
S29A3_BOVIN2.394e-1223.98Equilibrative nucleoside transporter 3 OS=Bos taur... [more]
S29A3_HUMAN5.333e-1225.79Equilibrative nucleoside transporter 3 OS=Homo sap... [more]
back to top
Properties
Property NameValue
Genbank descriptionCGF1004541_H09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IIIF_H09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934049 ID=CK934049; Name=CK934049; organism=Citrus sinensis; type=EST; length=917bp
GGGGACAGCTTAGTATCACGTGAATCCCACCCACTTCTGACTTCCCCCAC
CCCTTGCCGATGGGTCTGTCCGTAAAACCCGAACCCGGATCGGAGTCCGA
GTCCTCTCTTCTCCTCGGAAACTCAATAACTGTTCATCAGAAGCCGCCAC
CAGACACATTCCACCTGGCCTACATTATCTACTTCACCCTAGGCCTAGGC
TTTTTACTTCCATGGAACGCCTTCATCACAGCCGTCGATTACTTCTCCTA
CCTCTATCCAGAAGCATCCGTTGACCGCATCTTCGCAGTCGCTTACATGC
TCGTTGGCCTCTTCTGCCTCGTGATAATTGTGTTCTACGCGCACAAATCG
GATGCTTGGGTCAGAATCAACGTGGGCTTGGGCCTGTTCGTGGTGGCTTT
GCTTGTGGTGCCCGTTATGGACGCGGTTTATATCAAGGGTCGGGTCGGGT
TGTATGACGGGTTTACAGTAACGGTGGGGGCTGTTGCGCTTTCAGGTTTG
GCTGATGCGTTGGTCCAAGGTGGGTTGATTGGGGCCGCTGGTGAGTTGCC
TGACAGATACATGCAAGCTCTCGTTGCTGGCACTGCTGGTTCTGGTGTGC
TTGTTTCAGTTCTTCGAATCTTAACCAAAGCTGTATATACACAAGATGCA
ATTGGTCTGAGAAAAAGTGCAAACCTCTACTTTGCAGTTGGGATTGTGGT
TATGGTCATATGCATTGTCTTTTACAATGTGGCACATAGACTTCCAGTCA
TTAAATACCATGAAGATCTGAAGATTCAGGCTGTAAATGAGGAGAAAGAG
GAGAAAGGTTCCCTTACTGGGTCTATGTGGAGATCAGCTGTGTGGCATAT
TGTTGGGAGAGTCAAGTGGTATGGGTTTGGGGATCCTCCTCATCTATATT
GTGACATTATCAATATT
back to top