CK934064

Overview
NameCK934064
Unique NameCK934064
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length513
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1653 contig Csv1_Contig1653:1..513. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934064 vs. ExPASy Swiss-Prot
Match: RLC1_CITLI ((R)-limonene synthase 1 OS=Citrus limon PE=2 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 1.133e-59
Identity = 113/129 (87.60%), Postives = 118/129 (91.47%), Query Frame = 3
Query:   69 MSSCINPSTLATSVNGFKCLPLPTNRAAIRIMAKNKPVQCLVSAKCDNLTVDRRSANYQPSIWDHDFLQSLNSNYTDETYKRRAEELKGKVMTTIKDVTEPLDQLELIDNLQRLGLAYHFETEIRNILH 455
            MSSCINPSTL TSVN FKCLPL TN+AAIRIMAK KPVQCL+SAK DNLTVDRRSANYQPSIWDHDFLQSLNSNYTDE YKRRAEEL+GKV   IKDV EPLDQLELIDNLQRLGLA+ FETEIRNIL+
Sbjct:    1 MSSCINPSTLVTSVNAFKCLPLATNKAAIRIMAKYKPVQCLISAKYDNLTVDRRSANYQPSIWDHDFLQSLNSNYTDEAYKRRAEELRGKVKIAIKDVIEPLDQLELIDNLQRLGLAHRFETEIRNILN 129          
BLAST of CK934064 vs. ExPASy Swiss-Prot
Match: MYRS_QUEIL (Myrcene synthase, chloroplastic OS=Quercus ilex PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.037e-20
Identity = 50/94 (53.19%), Postives = 65/94 (69.15%), Query Frame = 3
Query:  174 KPVQCLVSAKCDNLT-VDRRSANYQPSIWDHDFLQSLNSNYTDETYKRRAEELKGKVMTTIKDVTEPLDQLELIDNLQRLGLAYHFETEIRNIL 452
            +PVQC+V+ K      + RRSANYQPSIW+HD+++SL   Y  ET  R+   LK +V   +  V  PL+QLELI+ LQRLGL+YHFE EI+ IL
Sbjct:   39 RPVQCMVANKVSTSPDILRRSANYQPSIWNHDYIESLRIEYVGETCTRQINVLKEQVRMMLHKVVNPLEQLELIEILQRLGLSYHFEEEIKRIL 132          
BLAST of CK934064 vs. ExPASy Swiss-Prot
Match: TPS2_CANSA ((+)-alpha-pinene synthase, chloroplastic OS=Cannabis sativa PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 8.214e-18
Identity = 47/94 (50.00%), Postives = 59/94 (62.77%), Query Frame = 3
Query:  177 PVQCLV--SAKCDNLTVDRRSANYQPSIWDHDFLQSLNSNYTDETYKRRAEELKGKVMTTIKDVTEPLDQLELIDNLQRLGLAYHFETEIRNIL 452
            P+QC +  S   D  T+ RRSANY P IW  DF+QSL   Y  E Y  R+ +LK +V   +  +   L QLELID LQRLG++YHFE EI +IL
Sbjct:   53 PIQCSLAKSPSSDTSTIVRRSANYDPPIWSFDFIQSLPCKYKGEPYTSRSNKLKEEVKKMLVGMENSLVQLELIDTLQRLGISYHFENEIISIL 146          
BLAST of CK934064 vs. ExPASy Swiss-Prot
Match: OCIS_ARATH ((E)-beta-ocimene synthase, chloroplastic OS=Arabidopsis thaliana GN=TPS03 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.713e-15
Identity = 40/78 (51.28%), Postives = 51/78 (65.38%), Query Frame = 3
Query:  219 VDRRSANYQPSIWDHDFLQSLNSNYTDETYKRRAEELKGKVMTTIKDVTEPLDQLELIDNLQRLGLAYHFETEIRNIL 452
            V RRSANYQPS+W H++L SL + Y  E    R   LK +V   + +    L+QLELID LQRLG++YHFE EI+  L
Sbjct:   24 VSRRSANYQPSLWQHEYLLSLGNTYVKEDNVERVTLLKQEVSKMLNETEGLLEQLELIDTLQRLGVSYHFEQEIKKTL 101          
BLAST of CK934064 vs. ExPASy Swiss-Prot
Match: MYRS1_ARATH (Myrcene/ocimene synthase 1, chloroplastic OS=Arabidopsis thaliana GN=TPS10 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.983e-15
Identity = 42/80 (52.50%), Postives = 53/80 (66.25%), Query Frame = 3
Query:  216 TVDRRSANYQPSIWDHDFLQSLNSNYTDETYKRRAEELKGKVMTTIKDVTEP-LDQLELIDNLQRLGLAYHFETEIRNIL 452
            TV RRSANYQPS WDH  L S+ + +  +   R  + LK KV   + D  +  LDQLE ID+LQ+LG++YHFE EI NIL
Sbjct:   43 TVQRRSANYQPSRWDHHHLLSVENKFAKDKRVRERDLLKEKVRKMLNDEQKTYLDQLEFIDDLQKLGVSYHFEAEIDNIL 122          
BLAST of CK934064 vs. ExPASy Swiss-Prot
Match: TPS1_CANSA ((-)-limonene synthase, chloroplastic OS=Cannabis sativa GN=TPS1 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.110e-14
Identity = 55/147 (37.41%), Postives = 78/147 (53.06%), Query Frame = 3
Query:   39 KLAYTTSVYPMSSCINPSTLATSVNGFKCLPLPTNRAAIRIMAKNKPVQCLVSAKC---DNLTV------DRRSANYQPSIWDHDFLQSLNSNYTDETYKRRAEELKGKVMTTIKDVTEPLDQLELIDNLQRLGLAYHFETEIRNIL 452
            + A ++S+   SS  N  T  TS+      P P  ++   + ++++   C  S +C   DN +       DRRSANY P IW  DF+QSL   Y  E+Y  R  +L+  V   +  V   L QLELID +QRLG++Y FE EI +IL
Sbjct:    8 QFASSSSLPIWSSIDNRFTPKTSITSIS-KPKPKLKSKSNLKSRSRSSTCY-SIQCTVVDNPSSTITNNSDRRSANYGPPIWSFDFVQSLPIQYKGESYTSRLNKLEKDVKRMLIGVENSLAQLELIDTIQRLGISYRFENEIISIL 152          
BLAST of CK934064 vs. ExPASy Swiss-Prot
Match: BPPS_SALOF ((+)-bornyl diphosphate synthase, chloroplastic OS=Salvia officinalis PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.473e-14
Identity = 41/106 (38.68%), Postives = 63/106 (59.43%), Query Frame = 3
Query:  135 PTNRAAIRIMAKNKPVQCLVSAKCDNLTVDRRSANYQPSIWDHDFLQSLNSNYTDETYKRRAEELKGKVMTTIKDVTEPLDQLELIDNLQRLGLAYHFETEIRNIL 452
            P+    +   A    ++   S+K       RRS NYQP++WD +++QSLN+ YT+E +  R  EL  +V   +K+  EP+ QLELI +L+ LGL+  F+ EI+ IL
Sbjct:   25 PSKALLVPCTAPTARLRASCSSKLQEAHQIRRSGNYQPALWDSNYIQSLNTPYTEERHLDRKAELIVQVRILLKEKMEPVQQLELIHDLKYLGLSDFFQDEIKEIL 130          
BLAST of CK934064 vs. ExPASy Swiss-Prot
Match: MYRS2_ARATH (Myrcene/ocimene synthase 2, chloroplastic OS=Arabidopsis thaliana GN=TPS24 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.219e-14
Identity = 40/82 (48.78%), Postives = 54/82 (65.85%), Query Frame = 3
Query:  213 LTVDRRSANYQPSIWDHDFLQSLNSNYTDETYKRRAEELKGKVMTTIKDVTEP--LDQLELIDNLQRLGLAYHFETEIRNIL 452
            L + RRS NYQPS WDH +L S+ + Y +E        LK KV   +++V     L++LELID+LQ+LG++YHFE EI NIL
Sbjct:   43 LDLRRRSGNYQPSSWDHSYLLSIENKYVNEKEVITRHVLKKKVKKMLEEVETKSRLEKLELIDDLQKLGVSYHFEQEINNIL 124          
BLAST of CK934064 vs. ExPASy Swiss-Prot
Match: SSS_SALOF ((+)-sabinene synthase, chloroplastic OS=Salvia officinalis PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 9.398e-14
Identity = 37/76 (48.68%), Postives = 53/76 (69.74%), Query Frame = 3
Query:  225 RRSANYQPSIWDHDFLQSLNSNYTDETYKRRAEELKGKVMTTIKDVTEPLDQLELIDNLQRLGLAYHFETEIRNIL 452
            RRS +YQPS+WD +++QSLN+ Y ++ +  R  EL  +V   +K   E + QLELID+LQ LGL+Y F+ EI+ IL
Sbjct:   52 RRSGDYQPSLWDFNYIQSLNTPYKEQRHFNRQAELIMQVRMLLKVKMEAIQQLELIDDLQYLGLSYFFQDEIKQIL 127          
BLAST of CK934064 vs. ExPASy Swiss-Prot
Match: CINS_ARATH (1,8-cineole synthase, chloroplastic OS=Arabidopsis thaliana GN=TPS27 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.227e-13
Identity = 44/105 (41.90%), Postives = 61/105 (58.10%), Query Frame = 3
Query:  141 NRAAIRIMAKNKPVQCLVSAKCDNLTVDRRSANYQPSIWDHDFLQSLNSNYTDETYKRRAEELKGKVMTTIKDVTEP-LDQLELIDNLQRLGLAYHFETEIRNIL 452
            +R   + M K  P   LV        + RRS NYQPS W+H +L S+ + Y  ET     + LK KV + + D  +  L+QLELID+LQ+LG++YHFE EI + L
Sbjct:   26 HRFVCKSMTKTTPDTTLVE-------LSRRSGNYQPSPWNHCYLLSIENKYASETEVITRDVLKKKVKSMLDDEKKSRLEQLELIDDLQKLGVSYHFEIEINDTL 123          
The following BLAST results are available for this feature:
BLAST of CK934064 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
RLC1_CITLI1.133e-5987.60(R)-limonene synthase 1 OS=Citrus limon PE=2 SV=1[more]
MYRS_QUEIL1.037e-2053.19Myrcene synthase, chloroplastic OS=Quercus ilex PE... [more]
TPS2_CANSA8.214e-1850.00(+)-alpha-pinene synthase, chloroplastic OS=Cannab... [more]
OCIS_ARATH1.713e-1551.28(E)-beta-ocimene synthase, chloroplastic OS=Arabid... [more]
MYRS1_ARATH4.983e-1552.50Myrcene/ocimene synthase 1, chloroplastic OS=Arabi... [more]
TPS1_CANSA1.110e-1437.41(-)-limonene synthase, chloroplastic OS=Cannabis s... [more]
BPPS_SALOF2.473e-1438.68(+)-bornyl diphosphate synthase, chloroplastic OS=... [more]
MYRS2_ARATH4.219e-1448.78Myrcene/ocimene synthase 2, chloroplastic OS=Arabi... [more]
SSS_SALOF9.398e-1448.68(+)-sabinene synthase, chloroplastic OS=Salvia off... [more]
CINS_ARATH1.227e-1341.901,8-cineole synthase, chloroplastic OS=Arabidopsis... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004541_H08 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IIIF_H08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934064 ID=CK934064; Name=CK934064; organism=Citrus sinensis; type=EST; length=513bp
GGGGATAGATTATGAGAATCTTTGCCAAGTATAACTGTAAGCTAGCTTAC
ACTACATCTGTATATCCAATGTCTTCTTGCATTAATCCCTCAACCTTGGC
TACCTCTGTAAATGGTTTCAAATGTCTTCCTCTTCCAACAAATAGAGCAG
CCATCAGAATCATGGCAAAAAATAAGCCAGTCCAATGCCTTGTCAGCGCC
AAATGTGATAATTTGACAGTTGATAGGAGATCAGCAAACTACCAACCTTC
AATTTGGGACCATGATTTTTTGCAGTCACTGAATAGCAACTATACGGATG
AAACATACAAAAGACGAGCAGAAGAGCTGAAGGGAAAAGTAATGACAACA
ATTAAGGATGTAACCGAGCCTCTGGATCAGTTGGAGCTGATTGACAACTT
GCAAAGACTTGGATTGGCTTATCATTTTGAGACTGAGATTCGGAACATAT
TGCACAATAACTACAACAATAATAAAGATTATAATTAGAAAAAAAAAAAA
AAAAAAAAAAAAA
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