CK934065

Overview
NameCK934065
Unique NameCK934065
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length792
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934065_ssr117 microsatellite CK934065_ssr117:117..132. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CK934065 vs. ExPASy Swiss-Prot
Match: ICR3_ARATH (Interactor of constitutive active ROPs 3 OS=Arabidopsis thaliana GN=ICR3 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 8.411e-29
Identity = 68/139 (48.92%), Postives = 97/139 (69.78%), Query Frame = 2
Query:  344 MQTPKARTSSSEVPQRKSLATPRTARQLKLPGXXXXXXXXXXXPMNKTPKG-SPKVVERKSPRSPALEKQRPSRVSELESQLAQLQEDLKKAKEQLNASDSWKRRAQQEAEEAKKQLSAMSARLEESQQQLLEITTSED 757
            MQT KAR  S +VP++ S   PR AR LK+               N+TPK  SP V+ R+SPRSP  EK+RPSR++ELE  ++QLQE+LKKAK+Q++ S++ K++A+QEAEE++KQL  +S++LEESQ Q +E +  E+
Sbjct:    1 MQTQKARNGSPDVPKKVS---PRAARPLKIAALEPESSSSPISATNRTPKDKSPNVLNRRSPRSPVSEKKRPSRITELELLVSQLQEELKKAKDQISVSETSKKQAEQEAEESRKQLQEVSSKLEESQNQFVETSALEE 136          
BLAST of CK934065 vs. ExPASy Swiss-Prot
Match: ICR2_ARATH (Interactor of constitutive active ROPs 2, chloroplastic OS=Arabidopsis thaliana GN=ICR2 PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.704e-26
Identity = 75/153 (49.02%), Postives = 98/153 (64.05%), Query Frame = 2
Query:  344 MQTPKARTSSSEVPQRKSLA-TPRTARQLKLPGXXXXXXXXXXXPMNKTPKGSPKVV-ERKSPRSPA--LEKQRPSRVSELESQLAQLQEDLKKAKEQLNASDSWKRRAQQEAEEAKKQLSAMSARLEESQQQLLEITTSEDTRVEELRQLSQ 790
            MQTPK R  S EVPQ+KS A TP+TAR+LK                 KT   SPKVV +R+SPR+P   ++K+R  +  EL SQ++QLQE+LKKAKEQL+AS++ K+ AQ +AEE K              QQL+EI  SED+R++ELR+LSQ
Sbjct:    1 MQTPKPRPGSLEVPQKKSPASTPKTARKLKTSESDPVSSPNTKIRTPKTQ--SPKVVADRRSPRTPVNEIQKKRTGKTPELASQISQLQEELKKAKEQLSASEALKKEAQDQAEETK--------------QQLMEINASEDSRIDELRKLSQ 137          
BLAST of CK934065 vs. ExPASy Swiss-Prot
Match: ICR5_ARATH (Interactor of constitutive active ROPs 5 OS=Arabidopsis thaliana GN=ICR5 PE=2 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.390e-23
Identity = 72/155 (46.45%), Postives = 97/155 (62.58%), Query Frame = 2
Query:  344 MQTPKARTSSSEVPQRKS-LATPRTARQLKLPGXXXXXXXXXXXPMNKTPKGS--PKVV-ERKSPRSPA--LEKQRPSRVSELESQLAQLQEDLKKAKEQLNASDSWKRRAQQEAEEAKKQLSAMSARLEESQQQLLEITTSEDTRVEELRQLSQ 790
            MQTPK+R  S E+PQ+KS L  P+  R+LK  G           P  KT   +  PKVV +R+S R P   ++K+R  R+ ELES ++QLQE+LKKAKE+LN S++ KR AQ+EAE+AK               QL++I  SED+R+EELR+LSQ
Sbjct:    1 MQTPKSRPGSLELPQKKSPLPAPKVVRRLKPSGAESD-------PKTKTISKTQIPKVVADRRSARIPLNEIQKKRTGRIPELESTISQLQEELKKAKEELNRSEALKREAQEEAEDAK--------------HQLMDINASEDSRIEELRKLSQ 134          
The following BLAST results are available for this feature:
BLAST of CK934065 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ICR3_ARATH8.411e-2948.92Interactor of constitutive active ROPs 3 OS=Arabid... [more]
ICR2_ARATH8.704e-2649.02Interactor of constitutive active ROPs 2, chloropl... [more]
ICR5_ARATH1.390e-2346.45Interactor of constitutive active ROPs 5 OS=Arabid... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004541_G02 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IIIF_G02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934065 ID=CK934065; Name=CK934065; organism=Citrus sinensis; type=EST; length=792bp
GGGGGAACTNNNTTGATTGCAACTTTTTCTTTATTTTCAATTTTTGTCTT
TGTCTTCTGGTTTATGGTTGGTGGTAGTGGGAGTAGTTTCCATGGAGTTT
CTTTGAAGCGACTGTATTGTTTGTTTGTTTGTTAGGCTTTGTGCATAGTG
ATTAGAAGTGGCTGTCGTTTATGGACCATTATGCCTATTCTTCCAATGCT
CACATATATATTAGTTTCTCTTTCATTCTTCTTTCCCAGCCAAATGTTTC
TCTGAACATTTGCAGGCGTTGTGGGTCAGGTGGGGTTTGATTTGAAGGAG
AGGCCATTTATTTTCCACTTCTGGCAGAGCGGATATAGAAGCTATGCAGA
CACCAAAAGCAAGAACCAGTTCTTCAGAAGTGCCTCAAAGAAAATCTCTT
GCAACACCTCGAACTGCTCGCCAACTCAAACTGCCAGGATCAGATTCAGA
CTCTGTTTCATCTGCCGCAAGTCCCATGAATAAAACACCAAAAGGAAGTC
CTAAAGTTGTTGAACGCAAATCACCTAGGAGTCCGGCATTGGAGAAACAG
CGACCAAGCAGAGTGTCTGAACTAGAATCCCAGCTTGCCCAACTTCAAGA
GGATCTCAAGAAGGCAAAGGAACAACTGAATGCTTCTGACTCCTGGAAGA
GGCGAGCTCAGCAAGAGGCTGAGGAGGCGAAGAAGCAGCTCTCAGCCATG
TCAGCAAGGCTCGAGGAATCTCAGCAACAGCTACTGGAGATTACTACTTC
TGAGGATACACGAGTTGAAGAGCTCAGACAGCTCTCACAGGA
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