CK934097

Overview
NameCK934097
Unique NameCK934097
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12605 contig Csv1_Contig12605:739..1426. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934097 vs. ExPASy Swiss-Prot
Match: MDHC_MEDSA (Malate dehydrogenase, cytoplasmic OS=Medicago sativa GN=CMDH PE=2 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 3.244e-58
Identity = 109/130 (83.85%), Postives = 115/130 (88.46%), Query Frame = 1
Query:    4 DVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 393
            DVNHATVNT AGEKPVR+LV DDAWLNGEFI+TVQQRGAAIIKARK           CDHIRDWVLGTP+GT+VSMGVYSDGSYNVP+GLIYSFPVTC NGEW IVQGLSIDEFSRKKLDLTAEEL+EEK
Sbjct:  195 DVNHATVNTPAGEKPVRQLVSDDAWLNGEFISTVQQRGAAIIKARKLSSALSAASAACDHIRDWVLGTPQGTFVSMGVYSDGSYNVPSGLIYSFPVTCANGEWKIVQGLSIDEFSRKKLDLTAEELTEEK 324          
BLAST of CK934097 vs. ExPASy Swiss-Prot
Match: MDHC2_ARATH (Malate dehydrogenase, cytoplasmic 2 OS=Arabidopsis thaliana GN=At5g43330 PE=2 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.363e-56
Identity = 106/130 (81.54%), Postives = 113/130 (86.92%), Query Frame = 1
Query:    4 DVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 393
            DVNHATV T+ GEKPVRELVK+D WLNGEFI+TVQQRGAAIIKARK           CDHIRDWV+GTPEGT+VSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGL ID+ SRKK+DLTAEEL EEK
Sbjct:  195 DVNHATVKTSVGEKPVRELVKNDEWLNGEFISTVQQRGAAIIKARKLSSALSAASSACDHIRDWVVGTPEGTFVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLPIDDASRKKMDLTAEELKEEK 324          
BLAST of CK934097 vs. ExPASy Swiss-Prot
Match: MDHC1_ARATH (Malate dehydrogenase, cytoplasmic 1 OS=Arabidopsis thaliana GN=At1g04410 PE=1 SV=2)

HSP 1 Score: 216.468 bits (550), Expect = 1.154e-55
Identity = 104/130 (80.00%), Postives = 114/130 (87.69%), Query Frame = 1
Query:    4 DVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 393
            DVNHA V T++GEKPVRELVKDDAWL+GEFI+TVQQRGAAIIKARK           CDHIRDWVLGTPEGT+VSMGVYSDGSY+VP+GLIYSFPVTCRNG+W+IVQGL IDE SRKK+DLTAEEL EEK
Sbjct:  195 DVNHAKVQTSSGEKPVRELVKDDAWLDGEFISTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPEGTFVSMGVYSDGSYSVPSGLIYSFPVTCRNGDWSIVQGLPIDEVSRKKMDLTAEELKEEK 324          
BLAST of CK934097 vs. ExPASy Swiss-Prot
Match: MDHC_MAIZE (Malate dehydrogenase, cytoplasmic OS=Zea mays PE=2 SV=2)

HSP 1 Score: 213.386 bits (542), Expect = 9.769e-55
Identity = 103/130 (79.23%), Postives = 109/130 (83.85%), Query Frame = 1
Query:    4 DVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 393
            DVNHATV T+ GEKPVRELV DD WLNGEFITTVQQRGAAIIKARK           CDHIRDWVLGTPEGT+VSMGVYSDGSY VP+GLIYSFPVTC  GEW IVQGL IDEFSRKK+D TA+EL+EEK
Sbjct:  195 DVNHATVKTSTGEKPVRELVSDDEWLNGEFITTVQQRGAAIIKARKFSSALSAASSACDHIRDWVLGTPEGTFVSMGVYSDGSYGVPSGLIYSFPVTCSGGEWKIVQGLPIDEFSRKKMDATAQELTEEK 324          
BLAST of CK934097 vs. ExPASy Swiss-Prot
Match: MDHC_MESCR (Malate dehydrogenase, cytoplasmic OS=Mesembryanthemum crystallinum GN=MDH PE=2 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.276e-54
Identity = 103/130 (79.23%), Postives = 108/130 (83.08%), Query Frame = 1
Query:    4 DVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 393
            DVNHATV T   +KPVRELV DDAWLNGEFITTVQQRGAAIIKARK           CDHI DWVLGTPEGTWVSMGVYSDGSYNVPAG+IYSFPVTC+NGEWTIVQGL ID+ SRKK+D TA EL EEK
Sbjct:  195 DVNHATVKTQGVDKPVRELVADDAWLNGEFITTVQQRGAAIIKARKLSSALSAASSACDHIHDWVLGTPEGTWVSMGVYSDGSYNVPAGIIYSFPVTCKNGEWTIVQGLPIDDDSRKKMDATAAELVEEK 324          
BLAST of CK934097 vs. ExPASy Swiss-Prot
Match: MDHC_ORYSJ (Malate dehydrogenase, cytoplasmic OS=Oryza sativa subsp. japonica GN=Os10g0478200 PE=1 SV=3)

HSP 1 Score: 212.616 bits (540), Expect = 1.666e-54
Identity = 104/130 (80.00%), Postives = 109/130 (83.85%), Query Frame = 1
Query:    4 DVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 393
            DVNHATV T +GEKPVRELV DD WLN EFI+TVQQRGAAIIKARK           CDHIRDWVLGTPEGT+VSMGVYSDGSY VPAGLIYSFPVTC  GEWTIVQGL IDEFSRKK+D TA+ELSEEK
Sbjct:  195 DVNHATVKTPSGEKPVRELVADDEWLNTEFISTVQQRGAAIIKARKQSSALSAASSACDHIRDWVLGTPEGTFVSMGVYSDGSYGVPAGLIYSFPVTCSGGEWTIVQGLPIDEFSRKKMDATAQELSEEK 324          
BLAST of CK934097 vs. ExPASy Swiss-Prot
Match: MDHC_BETVU (Malate dehydrogenase, cytoplasmic OS=Beta vulgaris GN=NR1 PE=1 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 4.104e-53
Identity = 101/131 (77.10%), Postives = 107/131 (81.68%), Query Frame = 1
Query:    4 DVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 396
            DVN  TV T +GEK VRELV DDAWLNGEFITTVQQRGAAIIKARK           CDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAG+IYSFPVTC++GEW IVQGL IDE SR+K+D T  EL EEKA
Sbjct:  195 DVNPCTVKTGSGEKAVRELVADDAWLNGEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGIIYSFPVTCKDGEWKIVQGLPIDEVSRQKMDATGAELVEEKA 325          
BLAST of CK934097 vs. ExPASy Swiss-Prot
Match: MDHC_PIG (Malate dehydrogenase, cytoplasmic OS=Sus scrofa GN=MDH1 PE=1 SV=4)

HSP 1 Score: 158.688 bits (400), Expect = 2.855e-38
Identity = 81/131 (61.83%), Postives = 96/131 (73.28%), Query Frame = 1
Query:    4 DVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDG-SYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 393
            DVNHA V   A E  V E VKDD+WL GEFITTVQQRGAA+IKARK           CDH+RD   GTPEG +VSMG+ SDG SY VP  L+YSFPVT ++  W IV+GL I++FSR+K+DLTA+EL+EEK
Sbjct:  194 DVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAVIKARKLSSAMSAAKAICDHVRDIWFGTPEGEFVSMGIISDGNSYGVPDDLLYSFPVTIKDKTWKIVEGLPINDFSREKMDLTAKELAEEK 324          
BLAST of CK934097 vs. ExPASy Swiss-Prot
Match: MDHC_BOVIN (Malate dehydrogenase, cytoplasmic OS=Bos taurus GN=MDH1 PE=2 SV=3)

HSP 1 Score: 155.221 bits (391), Expect = 3.157e-37
Identity = 77/131 (58.78%), Postives = 95/131 (72.52%), Query Frame = 1
Query:    4 DVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDG-SYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 393
            DVNHA V     E  V E +KDD+WL GEFITTVQQRGAA+IKARK           CDH+RD   GTPEG +VSMG+ SDG SY +P  L+YSFPVT ++  W +V+GL I++FSR+K+DLTA+EL+EEK
Sbjct:  194 DVNHAKVKLQGKEVGVYEALKDDSWLKGEFITTVQQRGAAVIKARKLSSAMSAAKAICDHVRDIWFGTPEGEFVSMGIISDGNSYGIPDDLLYSFPVTIKDKTWKVVEGLPINDFSREKMDLTAKELAEEK 324          
BLAST of CK934097 vs. ExPASy Swiss-Prot
Match: MDHC_HUMAN (Malate dehydrogenase, cytoplasmic OS=Homo sapiens GN=MDH1 PE=1 SV=4)

HSP 1 Score: 154.451 bits (389), Expect = 5.385e-37
Identity = 78/131 (59.54%), Postives = 93/131 (70.99%), Query Frame = 1
Query:    4 DVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDG-SYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 393
            DVNHA V     E  V E +KDD+WL GEF+TTVQQRGAA+IKARK           CDH+RD   GTPEG +VSMGV SDG SY VP  L+YSFPV  +N  W  V+GL I++FSR+K+DLTA+EL+EEK
Sbjct:  194 DVNHAKVKLQGKEVGVYEALKDDSWLKGEFVTTVQQRGAAVIKARKLSSAMSAAKAICDHVRDIWFGTPEGEFVSMGVISDGNSYGVPDDLLYSFPVVIKNKTWKFVEGLPINDFSREKMDLTAKELTEEK 324          
The following BLAST results are available for this feature:
BLAST of CK934097 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 185
Match NameE-valueIdentityDescription
MDHC_MEDSA3.244e-5883.85Malate dehydrogenase, cytoplasmic OS=Medicago sati... [more]
MDHC2_ARATH1.363e-5681.54Malate dehydrogenase, cytoplasmic 2 OS=Arabidopsis... [more]
MDHC1_ARATH1.154e-5580.00Malate dehydrogenase, cytoplasmic 1 OS=Arabidopsis... [more]
MDHC_MAIZE9.769e-5579.23Malate dehydrogenase, cytoplasmic OS=Zea mays PE=2... [more]
MDHC_MESCR1.276e-5479.23Malate dehydrogenase, cytoplasmic OS=Mesembryanthe... [more]
MDHC_ORYSJ1.666e-5480.00Malate dehydrogenase, cytoplasmic OS=Oryza sativa ... [more]
MDHC_BETVU4.104e-5377.10Malate dehydrogenase, cytoplasmic OS=Beta vulgaris... [more]
MDHC_PIG2.855e-3861.83Malate dehydrogenase, cytoplasmic OS=Sus scrofa GN... [more]
MDHC_BOVIN3.157e-3758.78Malate dehydrogenase, cytoplasmic OS=Bos taurus GN... [more]
MDHC_HUMAN5.385e-3759.54Malate dehydrogenase, cytoplasmic OS=Homo sapiens ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004541_D10 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IIIF_D10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934097 ID=CK934097; Name=CK934097; organism=Citrus sinensis; type=EST; length=709bp
GGGGATGTCAACCATGCAACTGTCAATACTGCAGCTGGGGAAAAGCCTGT
CCGTGAACTTGTCAAGGATGATGCATGGTTGAATGGAGAATTCATAACCA
CAGTCCAACAACGTGGTGCTGCAATCATCAAAGCCAGAAAGCTCTCGAGT
GCTCTGTCTGCTGCTAGCTCTGCTTGTGACCATATCCGTGATTGGGTTCT
TGGAACTCCTGAGGGCACCTGGGTCTCCATGGGGGTATACTCTGATGGTT
CATACAATGTACCAGCTGGGCTCATTTACTCATTCCCAGTAACCTGCCGC
AACGGTGAATGGACAATTGTTCAAGGACTCAGCATTGATGAATTCTCAAG
GAAGAAGTTGGACTTGACAGCAGAGGAGCTCTCCGAGGAGAAGGCCCTCG
CATACTCATGTCTCTCTTAAATGCTTTCTTCCCTTCAATAGTGTGTTACC
AAGGCCCTTAGCTTTGTCTGAGTTTGGTATAGTTACAGTTTCGAATAAAA
CCATTGTTGAAACCTGGAGGAACCATTGATGATGGAGAAGCCTTTCCATC
TTATGTTGCTATTTCTGCATTTGAATATCGGGATTTTGGAGTTTTGTTAC
TTTTCCTGGATAAATGGATATTAAAGGCCCATTGTGATTTATGTATCAAA
CTATCAATAACAATTTTTTTTTGTTTTAATAAAAAAAAAAAAAAAAAAAA
AAAAAAAAA
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