CK934214

Overview
NameCK934214
Unique NameCK934214
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length847
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1665 contig Csv1_Contig1665:1..846. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934214 vs. ExPASy Swiss-Prot
Match: GME1_ORYSJ (GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp. japonica GN=GME-1 PE=1 SV=1)

HSP 1 Score: 496.508 bits (1277), Expect = 7.699e-140
Identity = 238/253 (94.07%), Postives = 243/253 (96.05%), Query Frame = 2
Query:   98 MGSSE--GT-YGAYTYEELEREPYWPSEKLRISVTGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCLKVTKGVDHVFNFAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISGVKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAFCRKALTSTDKFEMWGDGLQTRSFTFIDECV 847
            MGSSE  GT YG YTY ELERE YWPSEKLRIS+TGAGGFI SHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCLKVT GVDHVFN AADMGGMGFIQSNHSVIMYNNTMISFNMLEA+RI+GVKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLA+EELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAFCRKA TSTD+FEMWGDGLQTRSFTFIDECV
Sbjct:    1 MGSSEKNGTAYGEYTYAELEREQYWPSEKLRISITGAGGFIGSHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCLKVTNGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLATEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECV 253          
BLAST of CK934214 vs. ExPASy Swiss-Prot
Match: GME1_ORYSI (GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp. indica GN=OsI_032456 PE=2 SV=1)

HSP 1 Score: 494.197 bits (1271), Expect = 3.821e-139
Identity = 237/253 (93.68%), Postives = 242/253 (95.65%), Query Frame = 2
Query:   98 MGSSE--GT-YGAYTYEELEREPYWPSEKLRISVTGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCLKVTKGVDHVFNFAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISGVKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAFCRKALTSTDKFEMWGDGLQTRSFTFIDECV 847
            MGSSE  GT YG YTY ELERE YWPSEKLRIS+TGAGGFI SHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCLKVT  VDHVFN AADMGGMGFIQSNHSVIMYNNTMISFNMLEA+RI+GVKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLA+EELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAFCRKA TSTD+FEMWGDGLQTRSFTFIDECV
Sbjct:    1 MGSSEKNGTAYGEYTYAELEREQYWPSEKLRISITGAGGFIGSHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCLKVTNSVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLATEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECV 253          
BLAST of CK934214 vs. ExPASy Swiss-Prot
Match: GME2_ORYSJ (GDP-mannose 3,5-epimerase 2 OS=Oryza sativa subsp. japonica GN=GME-2 PE=2 SV=2)

HSP 1 Score: 486.108 bits (1250), Expect = 1.041e-136
Identity = 228/240 (95.00%), Postives = 235/240 (97.92%), Query Frame = 2
Query:  128 YTYEELEREPYWPSEKLRISVTGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCLKVTKGVDHVFNFAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISGVKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAFCRKALTSTDKFEMWGDGLQTRSFTFIDECV 847
            YTY ELE+EPYWP EKLRIS+TGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCLKVT GVDHVFN AADMGGMGFIQSNHSVIMYNNTMISFNMLEA+RI+GVKRFFYASSACIYPEFKQL+T VSLKESDAWPAEPQDAYGLEKLA+EELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAFCRKALTSTD+FEMWGDGLQTRSFTFIDECV
Sbjct:    7 YTYVELEKEPYWPFEKLRISITGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCLKVTTGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASSACIYPEFKQLDTVVSLKESDAWPAEPQDAYGLEKLATEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAFCRKALTSTDRFEMWGDGLQTRSFTFIDECV 246          
BLAST of CK934214 vs. ExPASy Swiss-Prot
Match: GME_ARATH (GDP-mannose 3,5-epimerase OS=Arabidopsis thaliana GN=At5g28840 PE=1 SV=1)

HSP 1 Score: 483.411 bits (1243), Expect = 6.745e-136
Identity = 227/252 (90.08%), Postives = 242/252 (96.03%), Query Frame = 2
Query:   98 MGSSEGT-YGAYTYEELEREPYWPSEKLRISVTGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCLKVTKGVDHVFNFAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISGVKRFFYASSACIYPEFKQLE-TNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAFCRKALTSTDKFEMWGDGLQTRSFTFIDECV 847
            MG++ GT YGAYTY+ELERE YWPSE L+IS+TGAGGFIASHIARRLK EGHY+IASDWKKNEHMTEDMFC EFHLVDLRVM+NCLKVT+GVDHVFN AADMGGMGFIQSNHSVIMYNNTMISFNM+EA+RI+G+KRFFYASSACIYPEFKQLE TNVSLKESDAWPAEPQDAYGLEKLA+EELCKHY KDFGIECR+GRFHNIYGPFGTWKGGREKAPAAFCRKA TSTD+FEMWGDGLQTRSFTFIDECV
Sbjct:    1 MGTTNGTDYGAYTYKELEREQYWPSENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAYGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECV 252          
BLAST of CK934214 vs. ExPASy Swiss-Prot
Match: YTCB_BACSU (Uncharacterized UDP-glucose epimerase ytcB OS=Bacillus subtilis GN=ytcB PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.400e-16
Identity = 70/237 (29.54%), Postives = 111/237 (46.84%), Query Frame = 2
Query:  176 LRISVTGAGGFIASHIARRL-KSEGHYIIASD--------WKKNEHMTEDMFCHEFHLVDLRVMDNCL-KVTKGVDHVFNFAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISGVKRFFYASSACIYPEFK-QLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAFCR--KALTSTDKFEMWGDGLQTRSFTFIDECV 847
            ++I VTGA GFI SH+   L K + H +I  D          K +++   +    F  +   ++   L  + +GVD +F+ AA  G      ++      +N      +LEA R   ++ F +AS++ +Y E + ++  N SL         P   YG+ KL  E+LC  Y + FGI   + RF  +YGP       R++   AF R  K         ++GDG Q+R FT+I +CV
Sbjct:    1 MKILVTGAAGFIGSHLCEELLKDKKHNVIGIDDFIGPTPFSLKLKNLKNLLPEKRFTFIKENLLTADLASLLEGVDVIFHLAAIPGVRSSWGNHFHPYAAHNIQALQRLLEACREHSIQTFVFASTSSVYGEKQGKVSENTSLS--------PLSPYGVTKLTGEKLCHVYKQSFGIPIVILRFFTVYGP-------RQRPDMAFHRLIKQHLQQKPLTIFGDGQQSRDFTYISDCV 222          
BLAST of CK934214 vs. ExPASy Swiss-Prot
Match: FCL_ECOLI (GDP-L-fucose synthetase OS=Escherichia coli (strain K12) GN=fcl PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 6.536e-14
Identity = 54/228 (23.68%), Postives = 99/228 (43.42%), Query Frame = 2
Query:  173 KLRISVTGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCLKVTKGVDHVFNFAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISGVKRFFYASSACIYPEF-KQLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAFCRKALTSTDK----FEMWGDGLQTRSFTFIDE 841
            K R+ + G  G + S I R+L+  G   +    +   ++ +    H+F              ++ +D V+  AA +GG+    +  +  +Y N MI  N++ A+  + V +  +  S+CIYP+  KQ      L +    P    + Y + K+A  +LC+ Y + +G + R     N+YGP   +         A  R+   +T +      +WG G   R F  +D+
Sbjct:    3 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDELNLLDSRAVHDFF------------ASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAKQPMAESELLQGTLEPT--NEPYAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQNAPDVVVWGSGTPMREFLHVDD 216          
BLAST of CK934214 vs. ExPASy Swiss-Prot
Match: UXS1_RAT (UDP-glucuronic acid decarboxylase 1 OS=Rattus norvegicus GN=Uxs1 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.902e-13
Identity = 63/233 (27.04%), Postives = 108/233 (46.35%), Query Frame = 2
Query:  170 EKLRISVTGAGGFIASHIARRLKSEGHYIIASD--WKKNEHMTEDMFCHE-FHLVDLRVMDNCLKVTKGVDHVFNFAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISGVKRFFYASSACIYPEFKQLETNVSLKESDAW----PAEPQDAYGLEKLASEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAFCRKALTSTDKFEMWGDGLQTRSFTFIDECV 847
            ++ RI +TG  GF+ SH+  +L  +GH +   D  +   +   E    HE F L++  V++    +   VD +++ A+      ++  N    +  NT+ + NML  ++  G  R   AS++ +Y +       V  +  D W    P  P+  Y   K  +E +C  Y K  G+E RV R  N +GP      GR    + F  +AL   +   ++G G QTR+F ++ + V
Sbjct:   87 DRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVE---PLYIEVDQIYHLASPASPPNYMY-NPIKTLKTNTIGTLNMLGLAKRVGA-RLLLASTSEVYGD-----PEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGR--VVSNFILQALQG-EPLTVYGSGSQTRAFQYVSDLV 306          
BLAST of CK934214 vs. ExPASy Swiss-Prot
Match: UXS1_PONAB (UDP-glucuronic acid decarboxylase 1 OS=Pongo abelii GN=UXS1 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.902e-13
Identity = 63/233 (27.04%), Postives = 108/233 (46.35%), Query Frame = 2
Query:  170 EKLRISVTGAGGFIASHIARRLKSEGHYIIASD--WKKNEHMTEDMFCHE-FHLVDLRVMDNCLKVTKGVDHVFNFAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISGVKRFFYASSACIYPEFKQLETNVSLKESDAW----PAEPQDAYGLEKLASEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAFCRKALTSTDKFEMWGDGLQTRSFTFIDECV 847
            ++ RI +TG  GF+ SH+  +L  +GH +   D  +   +   E    HE F L++  V++    +   VD +++ A+      ++  N    +  NT+ + NML  ++  G  R   AS++ +Y +       V  +  D W    P  P+  Y   K  +E +C  Y K  G+E RV R  N +GP      GR    + F  +AL   +   ++G G QTR+F ++ + V
Sbjct:   87 DRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVE---PLYIEVDQIYHLASPASPPNYMY-NPIKTLKTNTIGTLNMLGLAKRVGA-RLLLASTSEVYGD-----PEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGR--VVSNFILQALQG-EPLTVYGSGSQTRAFQYVSDLV 306          
BLAST of CK934214 vs. ExPASy Swiss-Prot
Match: UXS1_MOUSE (UDP-glucuronic acid decarboxylase 1 OS=Mus musculus GN=Uxs1 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.902e-13
Identity = 63/233 (27.04%), Postives = 108/233 (46.35%), Query Frame = 2
Query:  170 EKLRISVTGAGGFIASHIARRLKSEGHYIIASD--WKKNEHMTEDMFCHE-FHLVDLRVMDNCLKVTKGVDHVFNFAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISGVKRFFYASSACIYPEFKQLETNVSLKESDAW----PAEPQDAYGLEKLASEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAFCRKALTSTDKFEMWGDGLQTRSFTFIDECV 847
            ++ RI +TG  GF+ SH+  +L  +GH +   D  +   +   E    HE F L++  V++    +   VD +++ A+      ++  N    +  NT+ + NML  ++  G  R   AS++ +Y +       V  +  D W    P  P+  Y   K  +E +C  Y K  G+E RV R  N +GP      GR    + F  +AL   +   ++G G QTR+F ++ + V
Sbjct:   87 DRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVE---PLYIEVDQIYHLASPASPPNYMY-NPIKTLKTNTIGTLNMLGLAKRVGA-RLLLASTSEVYGD-----PEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGR--VVSNFILQALQG-EPLTVYGSGSQTRAFQYVSDLV 306          
BLAST of CK934214 vs. ExPASy Swiss-Prot
Match: UXS1_HUMAN (UDP-glucuronic acid decarboxylase 1 OS=Homo sapiens GN=UXS1 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.902e-13
Identity = 63/233 (27.04%), Postives = 108/233 (46.35%), Query Frame = 2
Query:  170 EKLRISVTGAGGFIASHIARRLKSEGHYIIASD--WKKNEHMTEDMFCHE-FHLVDLRVMDNCLKVTKGVDHVFNFAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISGVKRFFYASSACIYPEFKQLETNVSLKESDAW----PAEPQDAYGLEKLASEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAFCRKALTSTDKFEMWGDGLQTRSFTFIDECV 847
            ++ RI +TG  GF+ SH+  +L  +GH +   D  +   +   E    HE F L++  V++    +   VD +++ A+      ++  N    +  NT+ + NML  ++  G  R   AS++ +Y +       V  +  D W    P  P+  Y   K  +E +C  Y K  G+E RV R  N +GP      GR    + F  +AL   +   ++G G QTR+F ++ + V
Sbjct:   87 DRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVE---PLYIEVDQIYHLASPASPPNYMY-NPIKTLKTNTIGTLNMLGLAKRVGA-RLLLASTSEVYGD-----PEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGR--VVSNFILQALQG-EPLTVYGSGSQTRAFQYVSDLV 306          
The following BLAST results are available for this feature:
BLAST of CK934214 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
GME1_ORYSJ7.699e-14094.07GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp.... [more]
GME1_ORYSI3.821e-13993.68GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp.... [more]
GME2_ORYSJ1.041e-13695.00GDP-mannose 3,5-epimerase 2 OS=Oryza sativa subsp.... [more]
GME_ARATH6.745e-13690.08GDP-mannose 3,5-epimerase OS=Arabidopsis thaliana ... [more]
YTCB_BACSU2.400e-1629.54Uncharacterized UDP-glucose epimerase ytcB OS=Baci... [more]
FCL_ECOLI6.536e-1423.68GDP-L-fucose synthetase OS=Escherichia coli (strai... [more]
UXS1_RAT1.902e-1327.04UDP-glucuronic acid decarboxylase 1 OS=Rattus norv... [more]
UXS1_PONAB1.902e-1327.04UDP-glucuronic acid decarboxylase 1 OS=Pongo abeli... [more]
UXS1_MOUSE1.902e-1327.04UDP-glucuronic acid decarboxylase 1 OS=Mus musculu... [more]
UXS1_HUMAN1.902e-1327.04UDP-glucuronic acid decarboxylase 1 OS=Homo sapien... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004540_A01 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IF_A01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934214 ID=CK934214; Name=CK934214; organism=Citrus sinensis; type=EST; length=847bp
GGGGATTCAATCTTTAATTCTTCCAAAGCCAGCCATTCTCCTCCTCCTTT
ATCTTCTCCTCTTTCATTAAACTCTCAAAGTTCAGGTGTTTTTCAGAATG
GGAAGTTCTGAAGGAACCTATGGTGCATACACCTATGAGGAGCTTGAGAG
GGAACCTTACTGGCCTTCTGAGAAGCTCCGAATTTCTGTCACTGGGGCAG
GTGGTTTTATTGCCTCCCACATTGCTCGGCGTCTGAAGAGTGAAGGCCAT
TACATTATTGCCTCTGACTGGAAGAAGAATGAGCACATGACTGAGGATAT
GTTCTGTCATGAATTCCACCTTGTTGACCTTAGGGTCATGGACAATTGCT
TGAAAGTTACTAAGGGGGTTGACCATGTGTTTAACTTTGCTGCTGATATG
GGTGGTATGGGCTTTATTCAGTCCAACCACTCTGTTATCATGTATAACAA
TACCATGATCAGCTTCAACATGCTTGAGGCTTCTAGGATCAGTGGAGTAA
AGAGGTTTTTCTATGCCTCCAGTGCCTGCATCTATCCCGAATTTAAGCAG
CTGGAAACTAACGTAAGCTTGAAGGAGTCTGATGCCTGGCCCGCTGAGCC
TCAAGATGCTTATGGCTTGGAGAAGCTTGCAAGTGAGGAGTTGTGTAAGC
ACTACACGAAAGACTTTGGAATTGAGTGTCGTGTTGGAAGATTCCACAAT
ATTTATGGGCCTTTTGGAACATGGAAAGGTGGAAGGGAAAAAGCTCCTGC
TGCTTTTTGCCGAAAGGCTCTTACTTCAACTGACAAGTTTGAGATGTGGG
GAGATGGACTTCAAACTCGATCTTTCACCTTCATTGATGAATGTGTT
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