CK934217

Overview
NameCK934217
Unique NameCK934217
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length830
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13710 contig Csv1_Contig13710:23..852. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934217 vs. ExPASy Swiss-Prot
Match: PSB1_PETHY (Proteasome subunit beta type-1 OS=Petunia hybrida GN=PBF1 PE=2 SV=1)

HSP 1 Score: 416.001 bits (1068), Expect = 1.288e-115
Identity = 202/223 (90.58%), Postives = 212/223 (95.07%), Query Frame = 3
Query:   78 MTKQHPAWSPYDNNGGTCVAIAGADYCVIAADTRMSTGCSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREYMELRKD 746
            MTKQ   WSPYDNNGGTCVA+AGADYCVIAADTRMSTG +ILTRDYSKI KLADKCVMASSGFQADV+ALQK+LA+RHLIYQHQHNKQMSCP M QLLSNTLYYKRFFPYYSFNVLGGLD+EGKGCV+TYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEA+DLVKTCFASATERDIYTGD+LEIV+LN  GI RE MELRKD
Sbjct:    1 MTKQQANWSPYDNNGGTCVAVAGADYCVIAADTRMSTGYNILTRDYSKIIKLADKCVMASSGFQADVRALQKVLASRHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDSEGKGCVFTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAIDLVKTCFASATERDIYTGDRLEIVILNASGIRREEMELRKD 223          
BLAST of CK934217 vs. ExPASy Swiss-Prot
Match: PSB1_ARATH (Proteasome subunit beta type-1 OS=Arabidopsis thaliana GN=PBF1 PE=1 SV=2)

HSP 1 Score: 389.808 bits (1000), Expect = 9.885e-108
Identity = 190/223 (85.20%), Postives = 205/223 (91.93%), Query Frame = 3
Query:   78 MTKQHPAWSPYDNNGGTCVAIAGADYCVIAADTRMSTGCSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREYMELRKD 746
            MTKQH  WSPYDNNGGTCVAIAG+DYCVIAADTRMSTG SIL+RDYSKI KLAD+ V++SSGFQADVKALQK+L +RHLIYQHQHNKQMSCP MAQLLSNTLY+KRFFPYY+FNVLGGLD EGKGCV+TYDAVGSYERVGY +QGSGSTLIMPFLDNQLKSPSPLLLP QD+ TPLSEAEAVDLVKT FASATERDIYTGDKLEI++L   GI  E M+LRKD
Sbjct:    1 MTKQHANWSPYDNNGGTCVAIAGSDYCVIAADTRMSTGYSILSRDYSKIHKLADRAVLSSSGFQADVKALQKVLKSRHLIYQHQHNKQMSCPAMAQLLSNTLYFKRFFPYYAFNVLGGLDEEGKGCVFTYDAVGSYERVGYGAQGSGSTLIMPFLDNQLKSPSPLLLPKQDSNTPLSEAEAVDLVKTVFASATERDIYTGDKLEIMILKADGIKTELMDLRKD 223          
BLAST of CK934217 vs. ExPASy Swiss-Prot
Match: PSB1_ORYSJ (Proteasome subunit beta type-1 OS=Oryza sativa subsp. japonica GN=PBF1 PE=2 SV=1)

HSP 1 Score: 370.163 bits (949), Expect = 8.105e-102
Identity = 177/213 (83.10%), Postives = 196/213 (92.02%), Query Frame = 3
Query:  108 YDNNGGTCVAIAGADYCVIAADTRMSTGCSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREYMELRKD 746
            Y+NNGGTCVAIAGADYCV+AADTR+S G +ILTRD+SKIC+LADKC +ASSGFQ D+KAL K LAAR L+YQHQHNK+MSCP MAQLLSNTLYYKRFFPYY+FNVLGGLD+EGKGCV+TYDAVGSYER GYS+QG+GS LIMP LDNQLKSPSPLLLPA+DAVTPLSE EAVDLVK  FASATERDIYTGDKLEIVV+NK G  REY++LRKD
Sbjct:    9 YENNGGTCVAIAGADYCVVAADTRLSVGYNILTRDHSKICELADKCALASSGFQGDIKALHKNLAARELLYQHQHNKRMSCPAMAQLLSNTLYYKRFFPYYAFNVLGGLDSEGKGCVFTYDAVGSYERTGYSAQGTGSALIMPVLDNQLKSPSPLLLPARDAVTPLSETEAVDLVKDVFASATERDIYTGDKLEIVVINKAGTKREYIDLRKD 221          
BLAST of CK934217 vs. ExPASy Swiss-Prot
Match: PSB1_DICDI (Proteasome subunit beta type-1 OS=Dictyostelium discoideum GN=psmB1 PE=3 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 4.211e-58
Identity = 117/220 (53.18%), Postives = 152/220 (69.09%), Query Frame = 3
Query:   90 HPAWSPYDNNGGTCVAIAGADYCVIAADTRMSTG-CSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREYMELRKD 746
            H  +  Y +NGGT +A+AG DYCVIA DTRMS G   I TR Y+KI +L  KCV+A+SG QAD  ALQK L +    ++ +H K MS P +AQ LSNTLYYKRFFPYY+FN++ G+D +G+G ++TYDAVGS+ERV YSSQGSG+ L++P LDNQ+   +  ++     V   S  + V  VK    SA ERDIYTGD  +IVV++K G+H E  EL+ D
Sbjct:   20 HGRFEAYVDNGGTVLAVAGKDYCVIAGDTRMSDGGYGIQTRKYTKIFQLTKKCVLATSGMQADTIALQKRLKSMLESFEKEHGKPMSTPAIAQFLSNTLYYKRFFPYYTFNLVAGVDEQGEGWIWTYDAVGSHERVKYSSQGSGNQLVIPLLDNQVAKFNQQIVEGNKDV---SCEQVVSFVKDSITSAGERDIYTGDFADIVVVDKNGVHWEKFELKLD 236          
BLAST of CK934217 vs. ExPASy Swiss-Prot
Match: PSB1B_CARAU (Proteasome subunit beta type-1-B OS=Carassius auratus GN=psmb1-B PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 5.890e-52
Identity = 103/216 (47.69%), Postives = 141/216 (65.28%), Query Frame = 3
Query:   99 WSPYDNNGGTCVAIAGADYCVIAADTRMSTGCSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREYMELRKD 746
            +SPY  NGGT +A+AG D+ ++A+DTR+S G SI +RD  K  KL D  V+  SGF  D   L K++ AR  +Y+H +NK M+   +A +LS  LY +RFFPYY +N++GGLD EG+G VY++D VGSY+R  Y + GS S ++ P LDNQ+   +           PLS+ +AV LVK  F SA ERD+YTGD L+I ++ K GI  E + LRKD
Sbjct:   26 FSPYAFNGGTVLAVAGEDFALVASDTRLSEGYSIHSRDSPKCYKLTDTTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKSMTSGAIAAMLSTILYGRRFFPYYVYNIIGGLDEEGRGAVYSFDPVGSYQRDTYKAGGSASAMLQPLLDNQIGFKN----MENVEQVPLSQEKAVQLVKDVFISAAERDVYTGDALKICIITKEGIREEIVPLRKD 237          
BLAST of CK934217 vs. ExPASy Swiss-Prot
Match: PSB1A_CARAU (Proteasome subunit beta type-1-A OS=Carassius auratus GN=psmb1-A PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 5.890e-52
Identity = 103/216 (47.69%), Postives = 141/216 (65.28%), Query Frame = 3
Query:   99 WSPYDNNGGTCVAIAGADYCVIAADTRMSTGCSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREYMELRKD 746
            +SPY  NGGT +A+AG D+ ++A+DTR+S G SI +RD  K  KL D  V+  SGF  D   L K++ AR  +Y+H +NK M+   +A +LS  LY +RFFPYY +N++GGLD EG+G VY++D VGSY+R  Y + GS S ++ P LDNQ+   +           PLS+ +AV LVK  F SA ERD+YTGD L+I ++ K GI  E + LRKD
Sbjct:   27 FSPYAFNGGTVLAVAGEDFALVASDTRLSEGYSIHSRDSPKCYKLTDTTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKSMTSGAIAAMLSTILYGRRFFPYYVYNIIGGLDEEGRGAVYSFDPVGSYQRDTYKAGGSASAMLQPLLDNQIGFKN----MENVEQVPLSQEKAVQLVKDVFISAAERDVYTGDALKICIITKEGIREEIVPLRKD 238          
BLAST of CK934217 vs. ExPASy Swiss-Prot
Match: PSB1_HUMAN (Proteasome subunit beta type-1 OS=Homo sapiens GN=PSMB1 PE=1 SV=2)

HSP 1 Score: 203.756 bits (517), Expect = 1.005e-51
Identity = 105/216 (48.61%), Postives = 140/216 (64.81%), Query Frame = 3
Query:   99 WSPYDNNGGTCVAIAGADYCVIAADTRMSTGCSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREYMELRKD 746
            +SPY  NGGT +AIAG D+ ++A+DTR+S G SI TRD  K  KL DK V+  SGF  D   L K++ AR  +Y+H +NK M+   +A +LS  LY +RFFPYY +N++GGLD EGKG VY++D VGSY+R  + + GS S ++ P LDNQ+   +   +       PLS   A+ LVK  F SA ERD+YTGD L I ++ K GI  E + LRKD
Sbjct:   30 FSPYVFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEH----VPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEGIREETVSLRKD 241          
BLAST of CK934217 vs. ExPASy Swiss-Prot
Match: PSB1_BOVIN (Proteasome subunit beta type-1 OS=Bos taurus GN=PSMB1 PE=1 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 2.238e-51
Identity = 104/216 (48.15%), Postives = 141/216 (65.28%), Query Frame = 3
Query:   99 WSPYDNNGGTCVAIAGADYCVIAADTRMSTGCSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREYMELRKD 746
            +SPY  NGGT +AIAG D+ ++A+DTR+S G SI TRD  K  KL DK V+  SGF  D   L K++ AR  +Y+H +NK M+   +A +LS  LY +RFFPYY +N++GGLD EGKG VY++D VGSY+R  + + GS S ++ P LDNQ+   +   +       PLS   A+ LVK  F SA ERD+YTGD L++ ++ K GI  E + LRKD
Sbjct:   30 FSPYAFNGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEH----VPLSLDRAMRLVKDVFISAAERDVYTGDALKVCIVTKEGIRGETVPLRKD 241          
BLAST of CK934217 vs. ExPASy Swiss-Prot
Match: PSB1_MOUSE (Proteasome subunit beta type-1 OS=Mus musculus GN=Psmb1 PE=1 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.923e-51
Identity = 104/216 (48.15%), Postives = 140/216 (64.81%), Query Frame = 3
Query:   99 WSPYDNNGGTCVAIAGADYCVIAADTRMSTGCSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREYMELRKD 746
            +SPY  NGGT +AIAG D+ ++A+DTR+S G SI TRD  K  KL DK V+  SGF  D   L K++ AR  +Y+H +NK M+   +A +LS  LY +RFFPYY +N++GGLD EGKG VY++D VGSY+R  + + GS S ++ P LDNQ+   +   +       PL+   A+ LVK  F SA ERD+YTGD L I ++ K GI  E + LRKD
Sbjct:   29 FSPYAFNGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEH----VPLTLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEGIREETVPLRKD 240          
BLAST of CK934217 vs. ExPASy Swiss-Prot
Match: PSB1_RAT (Proteasome subunit beta type-1 OS=Rattus norvegicus GN=Psmb1 PE=1 SV=3)

HSP 1 Score: 199.134 bits (505), Expect = 2.475e-50
Identity = 103/216 (47.69%), Postives = 139/216 (64.35%), Query Frame = 3
Query:   99 WSPYDNNGGTCVAIAGADYCVIAADTRMSTGCSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREYMELRKD 746
            +SPY  NGGT +AIAG D+ ++A+DTR+S G SI TRD  K  KL DK V+  SGF  D   L K++ AR  +Y+H +NK M+   +A +LS  LY +RFFPYY +N++ GLD EGKG VY++D VGSY+R  + + GS S ++ P LDNQ+   +   +       PL+   A+ LVK  F SA ERD+YTGD L I ++ K GI  E + LRKD
Sbjct:   29 FSPYAFNGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIEGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEH----VPLTLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEGIREETVPLRKD 240          
The following BLAST results are available for this feature:
BLAST of CK934217 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
PSB1_PETHY1.288e-11590.58Proteasome subunit beta type-1 OS=Petunia hybrida ... [more]
PSB1_ARATH9.885e-10885.20Proteasome subunit beta type-1 OS=Arabidopsis thal... [more]
PSB1_ORYSJ8.105e-10283.10Proteasome subunit beta type-1 OS=Oryza sativa sub... [more]
PSB1_DICDI4.211e-5853.18Proteasome subunit beta type-1 OS=Dictyostelium di... [more]
PSB1B_CARAU5.890e-5247.69Proteasome subunit beta type-1-B OS=Carassius aura... [more]
PSB1A_CARAU5.890e-5247.69Proteasome subunit beta type-1-A OS=Carassius aura... [more]
PSB1_HUMAN1.005e-5148.61Proteasome subunit beta type-1 OS=Homo sapiens GN=... [more]
PSB1_BOVIN2.238e-5148.15Proteasome subunit beta type-1 OS=Bos taurus GN=PS... [more]
PSB1_MOUSE2.923e-5148.15Proteasome subunit beta type-1 OS=Mus musculus GN=... [more]
PSB1_RAT2.475e-5047.69Proteasome subunit beta type-1 OS=Rattus norvegicu... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004540_A04 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IF_A04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934217 ID=CK934217; Name=CK934217; organism=Citrus sinensis; type=EST; length=830bp
GGGGAGATCTAAAACACTGAAAACGAACCCAAATTCATATTATCCAAATT
TCAAACCCTAATTGATCACAATTCATCATGACGAAGCAGCATCCTGCATG
GTCTCCATACGACAACAATGGAGGAACTTGTGTTGCGATTGCTGGTGCTG
ATTACTGTGTAATCGCTGCCGACACTCGAATGTCAACCGGTTGCAGTATC
CTCACTCGCGATTACTCCAAAATCTGTAAACTGGCAGACAAATGTGTTAT
GGCCTCTTCTGGTTTTCAAGCTGATGTGAAAGCCTTACAAAAACTCTTGG
CAGCAAGGCACTTGATCTATCAGCATCAGCACAACAAGCAAATGAGCTGC
CCTGGAATGGCTCAACTACTCTCCAACACCCTGTACTACAAGCGTTTCTT
TCCTTACTATTCATTTAATGTCTTGGGTGGGCTTGACAATGAAGGGAAGG
GTTGTGTCTACACATATGATGCTGTTGGTTCCTATGAGAGGGTTGGATAT
AGCTCCCAAGGTTCTGGGTCCACGCTCATCATGCCATTCCTGGATAACCA
ACTAAAGTCTCCCAGTCCTCTCCTACTGCCTGCCCAGGATGCTGTTACTC
CTCTTTCAGAGGCTGAAGCAGTTGATTTGGTCAAAACTTGTTTTGCATCA
GCAACTGAGAGAGACATATACACGGGAGACAAACTTGAAATTGTTGTCCT
AAACAAAGGTGGTATTCATCGTGAATACATGGAACTGAGGAAGGATTAAT
CTCTTTGGCATCATGCCACGCTCGTCAAGCTGAAGTGGGTGGAGCTGCCA
TGAGCAAAATTTCAGTGTTCTTATGTTGTC
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