CK934230

Overview
NameCK934230
Unique NameCK934230
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length824
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934230_ssr125 microsatellite CK934230_ssr125:125..136. BLAST: Citrus ESTs to Prunus persica proteins V1
CK934230_ssr42 microsatellite CK934230_ssr42:42..56. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4990 contig Csv1_Contig4990:47..870. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934230 vs. ExPASy Swiss-Prot
Match: SKP1B_ARATH (SKP1-like protein 1B OS=Arabidopsis thaliana GN=SKP1B PE=1 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 4.588e-65
Identity = 125/171 (73.10%), Postives = 136/171 (79.53%), Query Frame = 2
Query:  140 MSTSKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKKHVEASKSDDR-------------ATSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDLTPXXXXXXXXXNQWAFE 613
            MST +KITLKSSDGE FE+DEAVALESQTIKHMIEDDC DNGIPLPNVTSKILSKVIEYCK+HVEA++  +              A+   D+DLK WD++F+KVDQ TLFDLILAANYLNIK LLDLTCQTVADMIKGKTPEEIRKTFNIKND TP         NQWAFE
Sbjct:    1 MSTVRKITLKSSDGENFEIDEAVALESQTIKHMIEDDCTDNGIPLPNVTSKILSKVIEYCKRHVEAAEKSETTADAAAATTTTTVASGSSDEDLKTWDSEFIKVDQGTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 171          
BLAST of CK934230 vs. ExPASy Swiss-Prot
Match: SKP1A_ARATH (SKP1-like protein 1A OS=Arabidopsis thaliana GN=SKP1A PE=1 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 1.743e-64
Identity = 121/159 (76.10%), Postives = 134/159 (84.28%), Query Frame = 2
Query:  146 TSKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKKHVEASKSDDRATSGV---DDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDLTPXXXXXXXXXNQWAFE 613
            ++KKI LKSSDGE+FEV+EAVALESQTI HM+EDDC DNG+PLPNVTSKIL+KVIEYCK+HVEA+ S   A  G    DDDLKAWD DF+K+DQATLF+LILAANYLNIK+LLDLTCQTVADMIKGKTPEEIR TFNIKND TP         NQWAFE
Sbjct:    2 SAKKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKRHVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160          
BLAST of CK934230 vs. ExPASy Swiss-Prot
Match: ASK4_ARATH (SKP1-like protein 4 OS=Arabidopsis thaliana GN=ASK4 PE=1 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 3.295e-55
Identity = 108/160 (67.50%), Postives = 125/160 (78.12%), Query Frame = 2
Query:  146 TSKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKKHVEASKS----DDRATSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDLTPXXXXXXXXXNQWAFE 613
            T K I LKSSDGE+FE++EAVA++SQTIKHMIEDDCADNGIPLPNVT  IL+KVIEYCKKHVEA+       D   S  +D+LK WD++FVKVDQ TLFDLILAANYLNI  LLDLTC+ VAD ++GKTPE++R  FNIKND TP         N+WAFE
Sbjct:    4 TKKMIILKSSDGESFEIEEAVAVKSQTIKHMIEDDCADNGIPLPNVTGAILAKVIEYCKKHVEAAAEAGGDKDFYGSAENDELKNWDSEFVKVDQPTLFDLILAANYLNIGGLLDLTCKAVADQMRGKTPEQMRAHFNIKNDYTPEEEAEVRNENKWAFE 163          
BLAST of CK934230 vs. ExPASy Swiss-Prot
Match: ASK3_ARATH (SKP1-like protein 3 OS=Arabidopsis thaliana GN=ASK3 PE=1 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 4.028e-53
Identity = 105/160 (65.62%), Postives = 120/160 (75.00%), Query Frame = 2
Query:  146 TSKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKKHVEASK----SDDRATSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDLTPXXXXXXXXXNQWAFE 613
            T K I LKSSDGE+FEV+EAVA+ESQTIKHMIEDDC DNGIPLPNVT  IL+KVIEYCKKHVEA+       D   S  + +LK WD DFVKVD  TLFDL+ AANYLNI  LLDLTC+ VAD ++GKTP ++R+ FNIKND TP         N+WAFE
Sbjct:    4 TKKMIILKSSDGESFEVEEAVAVESQTIKHMIEDDCVDNGIPLPNVTGAILAKVIEYCKKHVEAAAEAGGDKDFYGSTENHELKTWDNDFVKVDHPTLFDLLRAANYLNISGLLDLTCKAVADQMRGKTPAQMREHFNIKNDYTPEEEAEVRNENRWAFE 163          
BLAST of CK934230 vs. ExPASy Swiss-Prot
Match: ASK11_ARATH (SKP1-like protein 11 OS=Arabidopsis thaliana GN=ASK11 PE=1 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.887e-51
Identity = 102/156 (65.38%), Postives = 119/156 (76.28%), Query Frame = 2
Query:  146 TSKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKKHVEASKSDDRATSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDLTPXXXXXXXXXNQWAFE 613
            +SK I L SSDG++FEV+EAVA++SQTI HM+EDDC  +GIPL NV SKIL KVIEYCKKH       D A    ++DL  WD  F+ ++Q+T+F+LILAANYLNIKSLLDLTCQTVADMIKGKTPEEIR TFNI+ND TP         NQWAFE
Sbjct:    2 SSKMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKKH-----HVDEANPISEEDLNNWDEKFMDLEQSTIFELILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152          
BLAST of CK934230 vs. ExPASy Swiss-Prot
Match: ASK12_ARATH (SKP1-like protein 12 OS=Arabidopsis thaliana GN=ASK12 PE=1 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.444e-50
Identity = 102/157 (64.97%), Postives = 119/157 (75.80%), Query Frame = 2
Query:  146 TSKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKK-HVEASKSDDRATSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDLTPXXXXXXXXXNQWAFE 613
            +SK I L SSDG++FEV+EAVA++SQTI HM+EDDC  +GIPL NV SKIL KVIEYCKK HV      D A    ++DL  WD  F+ ++Q+T+F+LILAANYLNIKSL DLTCQTVADMIKGKTPEEIR TFNI+ND TP         NQWAFE
Sbjct:    2 SSKMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKKYHV------DEANPISEEDLNKWDEKFMDLEQSTIFELILAANYLNIKSLFDLTCQTVADMIKGKTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152          
BLAST of CK934230 vs. ExPASy Swiss-Prot
Match: ASK9_ARATH (SKP1-like protein 9 OS=Arabidopsis thaliana GN=ASK9 PE=1 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 3.652e-46
Identity = 95/157 (60.51%), Postives = 113/157 (71.97%), Query Frame = 2
Query:  146 TSKKITLKSSDGEAFEVDEAVALESQTI-KHMIEDDCADNGIPLPNVTSKILSKVIEYCKKHVEASKSDDRATSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDLTPXXXXXXXXXNQWAFE 613
            ++KKI LKSSDG +FEV+E  A + Q I  HM E+DC DNGIPLPNVT KIL+ VIEYC KH       D A    DDDLK WD +F++ D +T+FDLI AANYLNIKSL DL CQTVA++IKG TPE+IR+ FNI+NDLTP         N+WAFE
Sbjct:    2 STKKIILKSSDGHSFEVEEEAARQCQIIIAHMSENDCTDNGIPLPNVTGKILAMVIEYCNKH-----HVDAANPCSDDDLKKWDKEFMEKDTSTIFDLIKAANYLNIKSLFDLACQTVAEIIKGNTPEQIREFFNIENDLTPEEEAAIRRENKWAFE 153          
BLAST of CK934230 vs. ExPASy Swiss-Prot
Match: ASK13_ARATH (SKP1-like protein 13 OS=Arabidopsis thaliana GN=ASK13 PE=1 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 3.652e-46
Identity = 95/157 (60.51%), Postives = 112/157 (71.34%), Query Frame = 2
Query:  149 SKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKKHVEASKSDDRATSGVDDDLKAWDTDFVKV--DQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDLTPXXXXXXXXXNQWAFE 613
            SK + L SSDGE+F+V+EAVA++SQTI HMIEDDC  NG+P+ NVT  ILSKVIEYCKKHV +    D  T    D+LK WD +F+K     +TLFD++LAANYLNIK LLDL CQTVADMI GK P+EIR    I+ND TP         NQWAFE
Sbjct:    2 SKMVMLLSSDGESFQVEEAVAVQSQTIAHMIEDDCVANGVPIANVTGVILSKVIEYCKKHVVS----DSPTEESKDELKKWDAEFMKALEQSSTLFDVMLAANYLNIKDLLDLGCQTVADMITGKKPDEIRALLGIENDFTPEEEEEIRKENQWAFE 154          
BLAST of CK934230 vs. ExPASy Swiss-Prot
Match: ASK10_ARATH (SKP1-like protein 10 OS=Arabidopsis thaliana GN=ASK10 PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 2.367e-45
Identity = 94/156 (60.26%), Postives = 107/156 (68.59%), Query Frame = 2
Query:  146 TSKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKKHVEASKSDDRATSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDLTPXXXXXXXXXNQWAFE 613
            ++KKI LKSSDG +FEV+E  A + QTI HM EDDC DNGIPLP VT KIL  VIEYC KH       D A    D+DLK WD +F++  Q+T+FDLI+AANYLNIKSLLDL CQTVADMIK  T E  RK FNI+ND T          NQW FE
Sbjct:    2 STKKIILKSSDGHSFEVEEEAACQCQTIAHMSEDDCTDNGIPLPEVTGKILEMVIEYCNKH-----HVDAANPCSDEDLKKWDKEFMEKYQSTIFDLIMAANYLNIKSLLDLACQTVADMIKDNTVEHTRKFFNIENDYTHEEEEAVRRENQWGFE 152          
BLAST of CK934230 vs. ExPASy Swiss-Prot
Match: ASK14_ARATH (SKP1-like protein 14 OS=Arabidopsis thaliana GN=ASK14 PE=1 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 6.446e-43
Identity = 91/157 (57.96%), Postives = 109/157 (69.43%), Query Frame = 2
Query:  146 TSKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKKHVEASKSDDRATSGVDDDLKAWDTDFVK-VDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDLTPXXXXXXXXXNQWAFE 613
            +S KI L SSDGE+FEV+EAVA + + ++HMIEDDC    +PL NVT KILS V+EYCKKHV   +SD+          K WD +F+K  DQ T+F L+LAANYLNIK LLDL+ QTVAD IK KTPEEIR+ FNI+ND TP         N WAFE
Sbjct:    2 SSNKIVLSSSDGESFEVEEAVARKLKIVEHMIEDDCVVTEVPLQNVTGKILSIVVEYCKKHVVDEESDE---------FKTWDEEFMKKFDQPTVFQLLLAANYLNIKGLLDLSAQTVADRIKDKTPEEIREIFNIENDFTPEEEAAVRKENAWAFE 149          
The following BLAST results are available for this feature:
BLAST of CK934230 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
SKP1B_ARATH4.588e-6573.10SKP1-like protein 1B OS=Arabidopsis thaliana GN=SK... [more]
SKP1A_ARATH1.743e-6476.10SKP1-like protein 1A OS=Arabidopsis thaliana GN=SK... [more]
ASK4_ARATH3.295e-5567.50SKP1-like protein 4 OS=Arabidopsis thaliana GN=ASK... [more]
ASK3_ARATH4.028e-5365.63SKP1-like protein 3 OS=Arabidopsis thaliana GN=ASK... [more]
ASK11_ARATH2.887e-5165.38SKP1-like protein 11 OS=Arabidopsis thaliana GN=AS... [more]
ASK12_ARATH2.444e-5064.97SKP1-like protein 12 OS=Arabidopsis thaliana GN=AS... [more]
ASK9_ARATH3.652e-4660.51SKP1-like protein 9 OS=Arabidopsis thaliana GN=ASK... [more]
ASK13_ARATH3.652e-4660.51SKP1-like protein 13 OS=Arabidopsis thaliana GN=AS... [more]
ASK10_ARATH2.367e-4560.26SKP1-like protein 10 OS=Arabidopsis thaliana GN=AS... [more]
ASK14_ARATH6.446e-4357.96SKP1-like protein 14 OS=Arabidopsis thaliana GN=AS... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004261_F08 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IVF_F08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934230 ID=CK934230; Name=CK934230; organism=Citrus sinensis; type=EST; length=824bp
GGGGGTCCGTTCCGAGAACAGACACCTTTTCGAAGGGCTTTTCTTCTCTT
CTCTTCATCTTTATCCTCCTTTTATATATAAATATAATAAATATCAAGAA
AGTTAGGGTTTCAAGAGTGTGTTGGATCGATCGATCAGAATGTCAACGAG
TAAGAAAATCACGCTGAAGAGCTCGGATGGAGAGGCGTTCGAGGTCGATG
AAGCAGTGGCGTTGGAATCGCAGACGATCAAGCATATGATTGAGGACGAT
TGCGCCGACAACGGAATCCCTTTGCCTAACGTTACCAGTAAGATCCTCTC
TAAGGTCATCGAGTACTGCAAGAAGCACGTCGAGGCATCTAAGTCCGACG
ATCGGGCCACTAGCGGCGTCGATGATGATCTCAAGGCTTGGGATACCGAT
TTCGTCAAAGTCGATCAGGCCACTCTCTTTGATCTTATTCTTGCGGCAAA
CTACCTGAACATCAAGAGCTTGCTGGACTTAACTTGCCAGACTGTTGCAG
ACATGATTAAGGGAAAGACTCCAGAGGAGATCCGCAAGACATTCAATATC
AAGAACGACCTTACCCCAGAAGAGGAGGAAGAGGTTCGTCGGGAGAATCA
GTGGGCTTTTGAGTGAAAGGATCTCAAATGACCAATTTGTAATTGTGTCT
TTTCTTTTTTGTTTTGCCTTCTTTTTGTTGTTGCTGCTGACTCAAATGTC
TTTAGCTGGTAAAAGCATCAAACCATTATTGTTTTAATGTCATATCACCC
CAACCTTCTCTGTATCATTAATTGTGAAGTCCTTTTGGATCTAACAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA
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