CK934239

Overview
NameCK934239
Unique NameCK934239
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length531
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1389 contig Csv1_Contig1389:160..690. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK934239 vs. ExPASy Swiss-Prot
Match: PST2_ARATH (Photosystem II 5 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=PSBT PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 1.673e-11
Identity = 41/96 (42.71%), Postives = 55/96 (57.29%), Query Frame = 1 
Query:  139 SMAKNPAATRAKRGGLIVVAKAASSKAENVSMEFKNKDESSSNGRRELVFXXXXXXXXXXXXXXXXESEEPKRGTPDAKKKYAPVCVTMPTTRICR 426
            ++AK P+AT  +R  L VV  + S    ++ +    K++SS+  RR+L+F                E EEPKRGT  AKKKYA VCVTMPT +ICR
Sbjct:   13 AVAKVPSATGGRR--LSVVRASTSDNTPSLEV----KEQSSTTMRRDLMFTAAAAAVCSLAKVAMAEEEEPKRGTEAAKKKYAQVCVTMPTAKICR 102
The following BLAST results are available for this feature:
BLAST of CK934239 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PST2_ARATH1.673e-1142.71Photosystem II 5 kDa protein, chloroplastic OS=Ara... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004261_E09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IVF_E09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934239 ID=CK934239; Name=CK934239; organism=Citrus sinensis; type=EST; length=531bp
GCGGGGACTTNNNATACATACTAACAAATAAANNNAACTCAATTCACCCA
TTTTGTGTCAACAGAGAAATCGCTTGCAACAAAGTCAGCAGCAAACATGG
CTTCGATGACCATGGCAGCAGCCTCATTACTGCCCACAAGCATGGCCAAA
AACCCAGCAGCAACAAGAGCGAAGAGAGGAGGCCTCATCGTTGTGGCCAA
GGCTGCATCATCAAAAGCTGAAAATGTGAGCATGGAATTCAAGAACAAGG
ATGAGAGCAGCAGCAACGGAAGAAGGGAGCTTGTGTTTGCAGCAGCAGCT
GCAGCAGCTTGCTCCATTGCAAAAGTTGCAATGGCTGAATCTGAGGAGCC
CAAACGAGGGACCCCAGATGCTAAGAAGAAGTATGCTCCTGTTTGTGTCA
CAATGCCTACTACTAGAATCTGTCGCGAGTGAGAATGTTTTTTAATTTTC
ATGCTGTTGATGTTAATTAGTGTCCAATTAATTGATATGAGATCAATGTT
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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