CK934270

Overview
NameCK934270
Unique NameCK934270
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length867
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig525 contig Csv1_Contig525:15..881. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934270 vs. ExPASy Swiss-Prot
Match: RHM2_ARATH (Probable rhamnose biosynthetic enzyme 2 OS=Arabidopsis thaliana GN=RHM2 PE=1 SV=1)

HSP 1 Score: 419.853 bits (1078), Expect = 9.489e-117
Identity = 200/276 (72.46%), Postives = 229/276 (82.97%), Query Frame = 2
Query:   38 LTDPNSNRNPIQSHLSFAFTHHYPMGFPANGSDAGSKPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFENVCTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMAILDELLPISIEMAKRNLTGIWNFTNPGVVSHNEILEIYRQYIDPNFTWKNFT 865
            L+D +S +  + S+    FT    +  P NG       LKFLIYG+TGW+GGLLGKLC+ Q I + YG GRLE+RASL ADI ++KPTHVFNAAG+TGRPNVDWCESHK ETIR NV GTLTLADVCR+  L+++N+ATGCIFEYD+ HP GSGIGFKEED PNF GSFYSKTKAMVEELL+ F+NVCTLRVRMPISSDL+NPRNFITKI+RY KVV+IPNSM +LDELLPISIEMAKRNL GIWNFTNPGVVSHNEILE+Y+ YI+P F W NFT
Sbjct:  349 LSDGSSEKKDVSSNTVQTFT----VVTPKNGDSGDKASLKFLIYGKTGWLGGLLGKLCEKQGITYEYGKGRLEDRASLVADIRSIKPTHVFNAAGLTGRPNVDWCESHKPETIRVNVAGTLTLADVCRENDLLMMNFATGCIFEYDATHPEGSGIGFKEEDKPNFFGSFYSKTKAMVEELLREFDNVCTLRVRMPISSDLNNPRNFITKISRYNKVVDIPNSMTVLDELLPISIEMAKRNLRGIWNFTNPGVVSHNEILEMYKNYIEPGFKWSNFT 620          
BLAST of CK934270 vs. ExPASy Swiss-Prot
Match: RHM1_ARATH (Probable rhamnose biosynthetic enzyme 1 OS=Arabidopsis thaliana GN=RHM1 PE=2 SV=1)

HSP 1 Score: 414.461 bits (1064), Expect = 3.987e-115
Identity = 200/258 (77.52%), Postives = 221/258 (85.66%), Query Frame = 2
Query:   95 THHYPMGFPANGSDAGSKP-LKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFENVCTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMAILDELLPISIEMAKRNLTGIWNFTNPGVVSHNEILEIYRQYIDPNFTWKNFT 865
            TH       +NG+    KP LKFLIYG+TGWIGGLLGK+C  Q I + YG GRLE+R+SL  DI +VKPTHVFN+AGVTGRPNVDWCESHK ETIR NV GTLTLADVCR+ GL+++N+ATGCIFEYD  HP GSGIGFKEEDTPNF GSFYSKTKAMVEELLK ++NVCTLRVRMPISSDL+NPRNFITKI+RY KVVNIPNSM +LDELLPISIEMAKRNL GIWNFTNPGVVSHNEILE+YR YI+P F W NFT
Sbjct:  367 THMVVPSQRSNGTP--QKPSLKFLIYGKTGWIGGLLGKICDKQGIAYEYGKGRLEDRSSLLQDIQSVKPTHVFNSAGVTGRPNVDWCESHKTETIRANVAGTLTLADVCREHGLLMMNFATGCIFEYDDKHPEGSGIGFKEEDTPNFTGSFYSKTKAMVEELLKEYDNVCTLRVRMPISSDLNNPRNFITKISRYNKVVNIPNSMTVLDELLPISIEMAKRNLKGIWNFTNPGVVSHNEILEMYRDYINPEFKWANFT 622          
BLAST of CK934270 vs. ExPASy Swiss-Prot
Match: RHM3_ARATH (Probable rhamnose biosynthetic enzyme 3 OS=Arabidopsis thaliana GN=RHM3 PE=2 SV=1)

HSP 1 Score: 413.305 bits (1061), Expect = 8.881e-115
Identity = 192/245 (78.37%), Postives = 216/245 (88.16%), Query Frame = 2
Query:  128 GSDAGSKPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFENVCTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMAILDELLPISIEMAKRNLTGIWNFTNPGVVSHNEILEIYRQYIDPNFTWKNF 862
            G     + LKFLIYG+TGW+GGLLGKLC+ Q I + YG GRLE+RASL ADI ++KP+HVFNAAG+TGRPNVDWCESHK ETIR NV GTLTLADVCR+  L+++N+ATGCIFEYD+ HP GSGIGFKEED PNF GSFYSKTKAMVEELL+ F+NVCTLRVRMPISSDL+NPRNFITKI+RY KVVNIPNSM ILDELLPISIEMAKRNL GIWNFTNPGVVSHNEILE+Y+ YI+P+F W NF
Sbjct:  372 GCSGDKRSLKFLIYGKTGWLGGLLGKLCEKQGIPYEYGKGRLEDRASLIADIRSIKPSHVFNAAGLTGRPNVDWCESHKTETIRVNVAGTLTLADVCRENDLLMMNFATGCIFEYDAAHPEGSGIGFKEEDKPNFTGSFYSKTKAMVEELLREFDNVCTLRVRMPISSDLNNPRNFITKISRYNKVVNIPNSMTILDELLPISIEMAKRNLRGIWNFTNPGVVSHNEILEMYKSYIEPDFKWSNF 616          
BLAST of CK934270 vs. ExPASy Swiss-Prot
Match: YL780_MIMIV (Uncharacterized protein L780 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L780 PE=4 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 7.169e-48
Identity = 100/244 (40.98%), Postives = 146/244 (59.84%), Query Frame = 2
Query:  152 LKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNAAGVTGRPN---VDWCESHK--VETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFEN-VCTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMAILDELLPISIEMAKRNLTGIWNFTNPGVVSHNEILEIYRQYIDPNFTWKNFT 865
            +K+LI+G  GWIG ++ K+ + Q         R ++ +++E +I+ +KP  V +  G T  P    +D+ E     VE ++ N+ G L LA +C+   + L    TGCIFE  +        GF E D PNF GS YS  K   + L+  F+N V  LR+RMPI+ +  NPR+FITKI  Y ++ +IPNSM ILD+++P+ I+MA+   TG +NFTNPG+VSHNEIL + R    PN TW+N +
Sbjct:    1 MKWLIFGNKGWIGSMVSKILEQQGEQVVGAQSRADDESAVEREISEIKPDRVMSFIGRTHGPGYSTIDYLEQSGKLVENVKDNLYGPLCLAFICQKYNIHLTYLGTGCIFEGQNNFSADEK-GFTENDKPNFFGSSYSVVKGFTDRLMHFFDNDVLNLRIRMPITIE-QNPRSFITKILSYSRICSIPNSMTILDQMIPVMIDMARNKTTGTFNFTNPGLVSHNEILSLIRDIHKPNLTWENMS 242          
The following BLAST results are available for this feature:
BLAST of CK934270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
RHM2_ARATH9.489e-11772.46Probable rhamnose biosynthetic enzyme 2 OS=Arabido... [more]
RHM1_ARATH3.987e-11577.52Probable rhamnose biosynthetic enzyme 1 OS=Arabido... [more]
RHM3_ARATH8.881e-11578.37Probable rhamnose biosynthetic enzyme 3 OS=Arabido... [more]
YL780_MIMIV7.169e-4840.98Uncharacterized protein L780 OS=Acanthamoeba polyp... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004261_C10 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IVF_C10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934270 ID=CK934270; Name=CK934270; organism=Citrus sinensis; type=EST; length=867bp
GGGGACACACATAGATTCCAATCAATAGTACGAAATTCTAACAGATCCAA
ATTCAAATCGAAATCCGATCCAGTCTCATCTCTCCTTTGCATTCACTCAC
CATTACCCAATGGGTTTCCCAGCCAACGGCTCCGACGCCGGCTCCAAGCC
GCTCAAGTTTCTCATCTACGGCCGCACTGGCTGGATCGGGGGCTTGCTCG
GCAAGCTCTGCCAAGCTCAGTCCATTGACTTCACCTACGGCTCCGGCCGC
CTCGAGAACCGCGCCTCCCTCGAAGCCGACATCGCCGCCGTCAAGCCCAC
CCACGTCTTCAACGCGGCCGGGGTGACCGGTAGGCCCAACGTCGACTGGT
GCGAATCGCATAAGGTCGAGACCATACGGACTAATGTCGTCGGCACCCTT
ACGCTTGCTGACGTCTGCAGAGACAAAGGTTTGATTCTCATTAATTACGC
CACCGGCTGCATCTTCGAGTACGATTCCGGTCACCCCCTCGGATCCGGCA
TCGGCTTCAAGGAGGAGGATACTCCGAATTTTGTCGGATCTTTCTACTCC
AAGACTAAGGCCATGGTGGAAGAGTTGCTCAAGAATTTTGAGAATGTCTG
TACTTTGCGTGTCAGGATGCCGATCTCATCAGATTTATCCAATCCTCGCA
ACTTCATCACAAAGATCACTCGATATGAAAAGGTAGTCAACATTCCAAAC
TCAATGGCTATCTTGGATGAGCTTCTTCCAATTTCCATTGAGATGGCAAA
GAGAAACCTCACTGGAATTTGGAACTTTACGAACCCCGGTGTGGTGAGCC
ACAATGAGATTCTGGAGATTTATCGGCAGTACATAGACCCCAACTTCACT
TGGAAAAATTTTACCTT
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