CK934274
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK934274 vs. ExPASy Swiss-Prot
Match: SMD2_DROME (Probable small nuclear ribonucleoprotein Sm D2 OS=Drosophila melanogaster GN=snRNP2 PE=1 SV=1) HSP 1 Score: 182.57 bits (462), Expect = 1.914e-45 Identity = 87/100 (87.00%), Postives = 93/100 (93.00%), Query Frame = 2 Query: 104 EDNVKNEEEDFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPRTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 403 E+ + EEE+FNTGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTELPRTGKGKKK PVNKDRFISKMFLRGDSVI+VLRNP Sbjct: 13 EELARQEEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKKKVKPVNKDRFISKMFLRGDSVILVLRNP 112
BLAST of CK934274 vs. ExPASy Swiss-Prot
Match: SMD2_MOUSE (Small nuclear ribonucleoprotein Sm D2 OS=Mus musculus GN=Snrpd2 PE=2 SV=1) HSP 1 Score: 178.718 bits (452), Expect = 2.763e-44 Identity = 84/100 (84.00%), Postives = 94/100 (94.00%), Query Frame = 2 Query: 104 EDNVKNEEEDFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPRTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 403 E+ K EEE+FNTGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+P++GKGKKK+ PVNKDR+ISKMFLRGDSVI+VLRNP Sbjct: 14 EELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113
BLAST of CK934274 vs. ExPASy Swiss-Prot
Match: SMD2_HUMAN (Small nuclear ribonucleoprotein Sm D2 OS=Homo sapiens GN=SNRPD2 PE=1 SV=1) HSP 1 Score: 178.718 bits (452), Expect = 2.763e-44 Identity = 84/100 (84.00%), Postives = 94/100 (94.00%), Query Frame = 2 Query: 104 EDNVKNEEEDFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPRTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 403 E+ K EEE+FNTGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+P++GKGKKK+ PVNKDR+ISKMFLRGDSVI+VLRNP Sbjct: 14 EELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113
BLAST of CK934274 vs. ExPASy Swiss-Prot
Match: SMD2_BOVIN (Small nuclear ribonucleoprotein Sm D2 OS=Bos taurus GN=SNRPD2 PE=3 SV=1) HSP 1 Score: 178.718 bits (452), Expect = 2.763e-44 Identity = 84/100 (84.00%), Postives = 94/100 (94.00%), Query Frame = 2 Query: 104 EDNVKNEEEDFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPRTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 403 E+ K EEE+FNTGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+P++GKGKKK+ PVNKDR+ISKMFLRGDSVI+VLRNP Sbjct: 14 EELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113
BLAST of CK934274 vs. ExPASy Swiss-Prot
Match: SMD2_CAEEL (Probable small nuclear ribonucleoprotein Sm D2 OS=Caenorhabditis elegans GN=snr-4 PE=1 SV=1) HSP 1 Score: 165.236 bits (417), Expect = 3.162e-40 Identity = 78/100 (78.00%), Postives = 89/100 (89.00%), Query Frame = 2 Query: 104 EDNVKNEEEDFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPRTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 403 E+ E+E+FN GPLS+L SVKNN QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+P+TGKGKKKA V KDRFISKMFLRGDSVI+V++NP Sbjct: 14 EELAAKEDEEFNVGPLSILTNSVKNNHQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKAKSVAKDRFISKMFLRGDSVILVVKNP 113
BLAST of CK934274 vs. ExPASy Swiss-Prot
Match: SMD2_DICDI (Probable small nuclear ribonucleoprotein Sm D2 OS=Dictyostelium discoideum GN=snrpd2 PE=3 SV=1) HSP 1 Score: 162.54 bits (410), Expect = 2.049e-39 Identity = 80/106 (75.47%), Postives = 95/106 (89.62%), Query Frame = 2 Query: 86 MSRPMEEDNVKNEEEDFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPRTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 403 MSR M ++ ++++ +D N GPLS+LM SV NNTQVLIN RNNKKLLGRVRAFDRHCNMVLENV+E+WTE+P+T KGKKKA P+NKDRFISKMFLRGDSVI+VL+NP Sbjct: 1 MSR-MNDETMEDKPDDSN-GPLSILMDSVNNNTQVLINVRNNKKLLGRVRAFDRHCNMVLENVKEIWTEVPKTAKGKKKAKPINKDRFISKMFLRGDSVILVLKNP 104
BLAST of CK934274 vs. ExPASy Swiss-Prot
Match: SMD2_SCHPO (Probable small nuclear ribonucleoprotein Sm D2 OS=Schizosaccharomyces pombe GN=smd2 PE=2 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 1.204e-31 Identity = 72/112 (64.29%), Postives = 85/112 (75.89%), Query Frame = 2 Query: 68 RSKLSNMSRPMEEDNVKNEEEDFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPRTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 403 RS+LS E + + EE +F+ GPLSVL +VKN+ QVLINCRNNKKLL RV+AFDRH NMVLENV+EMWTE RT G KK +NKDRFISKMFLRGD V++V+R P Sbjct: 9 RSELS------EIELARLEEYEFSAGPLSVLQQAVKNHDQVLINCRNNKKLLARVKAFDRHSNMVLENVKEMWTEKKRTASG-KKGKAINKDRFISKMFLRGDGVVLVVRIP 113
BLAST of CK934274 vs. ExPASy Swiss-Prot
Match: SMD2_YEAST (Small nuclear ribonucleoprotein Sm D2 OS=Saccharomyces cerevisiae GN=SMD2 PE=1 SV=2) HSP 1 Score: 106.301 bits (264), Expect = 1.743e-22 Identity = 51/94 (54.26%), Postives = 70/94 (74.47%), Query Frame = 2 Query: 122 EEEDFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPRTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 403 EE +F GP+S++ ++ T V+I+ RNN K++ RV+AFDRHCNMVLENV+E+WTE KK +N++RFISK+FLRGDSVI+VL+ P Sbjct: 22 EEFEFKHGPMSLINDAMVTRTPVIISLRNNHKIIARVKAFDRHCNMVLENVKELWTE-------KKGKNVINRERFISKLFLRGDSVIVVLKTP 108 The following BLAST results are available for this feature:
BLAST of CK934274 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 8
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CK934274 ID=CK934274; Name=CK934274; organism=Citrus sinensis; type=EST; length=728bpback to top |