CK934274

Overview
NameCK934274
Unique NameCK934274
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length728
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934274 vs. ExPASy Swiss-Prot
Match: SMD2_DROME (Probable small nuclear ribonucleoprotein Sm D2 OS=Drosophila melanogaster GN=snRNP2 PE=1 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.914e-45
Identity = 87/100 (87.00%), Postives = 93/100 (93.00%), Query Frame = 2
Query:  104 EDNVKNEEEDFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPRTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 403
            E+  + EEE+FNTGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTELPRTGKGKKK  PVNKDRFISKMFLRGDSVI+VLRNP
Sbjct:   13 EELARQEEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKKKVKPVNKDRFISKMFLRGDSVILVLRNP 112          
BLAST of CK934274 vs. ExPASy Swiss-Prot
Match: SMD2_MOUSE (Small nuclear ribonucleoprotein Sm D2 OS=Mus musculus GN=Snrpd2 PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.763e-44
Identity = 84/100 (84.00%), Postives = 94/100 (94.00%), Query Frame = 2
Query:  104 EDNVKNEEEDFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPRTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 403
            E+  K EEE+FNTGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+P++GKGKKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct:   14 EELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113          
BLAST of CK934274 vs. ExPASy Swiss-Prot
Match: SMD2_HUMAN (Small nuclear ribonucleoprotein Sm D2 OS=Homo sapiens GN=SNRPD2 PE=1 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.763e-44
Identity = 84/100 (84.00%), Postives = 94/100 (94.00%), Query Frame = 2
Query:  104 EDNVKNEEEDFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPRTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 403
            E+  K EEE+FNTGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+P++GKGKKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct:   14 EELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113          
BLAST of CK934274 vs. ExPASy Swiss-Prot
Match: SMD2_BOVIN (Small nuclear ribonucleoprotein Sm D2 OS=Bos taurus GN=SNRPD2 PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.763e-44
Identity = 84/100 (84.00%), Postives = 94/100 (94.00%), Query Frame = 2
Query:  104 EDNVKNEEEDFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPRTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 403
            E+  K EEE+FNTGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+P++GKGKKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct:   14 EELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113          
BLAST of CK934274 vs. ExPASy Swiss-Prot
Match: SMD2_CAEEL (Probable small nuclear ribonucleoprotein Sm D2 OS=Caenorhabditis elegans GN=snr-4 PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.162e-40
Identity = 78/100 (78.00%), Postives = 89/100 (89.00%), Query Frame = 2
Query:  104 EDNVKNEEEDFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPRTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 403
            E+    E+E+FN GPLS+L  SVKNN QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+P+TGKGKKKA  V KDRFISKMFLRGDSVI+V++NP
Sbjct:   14 EELAAKEDEEFNVGPLSILTNSVKNNHQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKAKSVAKDRFISKMFLRGDSVILVVKNP 113          
BLAST of CK934274 vs. ExPASy Swiss-Prot
Match: SMD2_DICDI (Probable small nuclear ribonucleoprotein Sm D2 OS=Dictyostelium discoideum GN=snrpd2 PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.049e-39
Identity = 80/106 (75.47%), Postives = 95/106 (89.62%), Query Frame = 2
Query:   86 MSRPMEEDNVKNEEEDFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPRTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 403
            MSR M ++ ++++ +D N GPLS+LM SV NNTQVLIN RNNKKLLGRVRAFDRHCNMVLENV+E+WTE+P+T KGKKKA P+NKDRFISKMFLRGDSVI+VL+NP
Sbjct:    1 MSR-MNDETMEDKPDDSN-GPLSILMDSVNNNTQVLINVRNNKKLLGRVRAFDRHCNMVLENVKEIWTEVPKTAKGKKKAKPINKDRFISKMFLRGDSVILVLKNP 104          
BLAST of CK934274 vs. ExPASy Swiss-Prot
Match: SMD2_SCHPO (Probable small nuclear ribonucleoprotein Sm D2 OS=Schizosaccharomyces pombe GN=smd2 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.204e-31
Identity = 72/112 (64.29%), Postives = 85/112 (75.89%), Query Frame = 2
Query:   68 RSKLSNMSRPMEEDNVKNEEEDFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPRTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 403
            RS+LS      E +  + EE +F+ GPLSVL  +VKN+ QVLINCRNNKKLL RV+AFDRH NMVLENV+EMWTE  RT  G KK   +NKDRFISKMFLRGD V++V+R P
Sbjct:    9 RSELS------EIELARLEEYEFSAGPLSVLQQAVKNHDQVLINCRNNKKLLARVKAFDRHSNMVLENVKEMWTEKKRTASG-KKGKAINKDRFISKMFLRGDGVVLVVRIP 113          
BLAST of CK934274 vs. ExPASy Swiss-Prot
Match: SMD2_YEAST (Small nuclear ribonucleoprotein Sm D2 OS=Saccharomyces cerevisiae GN=SMD2 PE=1 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.743e-22
Identity = 51/94 (54.26%), Postives = 70/94 (74.47%), Query Frame = 2
Query:  122 EEEDFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPRTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 403
            EE +F  GP+S++  ++   T V+I+ RNN K++ RV+AFDRHCNMVLENV+E+WTE       KK    +N++RFISK+FLRGDSVI+VL+ P
Sbjct:   22 EEFEFKHGPMSLINDAMVTRTPVIISLRNNHKIIARVKAFDRHCNMVLENVKELWTE-------KKGKNVINRERFISKLFLRGDSVIVVLKTP 108          
The following BLAST results are available for this feature:
BLAST of CK934274 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
SMD2_DROME1.914e-4587.00Probable small nuclear ribonucleoprotein Sm D2 OS=... [more]
SMD2_MOUSE2.763e-4484.00Small nuclear ribonucleoprotein Sm D2 OS=Mus muscu... [more]
SMD2_HUMAN2.763e-4484.00Small nuclear ribonucleoprotein Sm D2 OS=Homo sapi... [more]
SMD2_BOVIN2.763e-4484.00Small nuclear ribonucleoprotein Sm D2 OS=Bos tauru... [more]
SMD2_CAEEL3.162e-4078.00Probable small nuclear ribonucleoprotein Sm D2 OS=... [more]
SMD2_DICDI2.049e-3975.47Probable small nuclear ribonucleoprotein Sm D2 OS=... [more]
SMD2_SCHPO1.204e-3164.29Probable small nuclear ribonucleoprotein Sm D2 OS=... [more]
SMD2_YEAST1.743e-2254.26Small nuclear ribonucleoprotein Sm D2 OS=Saccharom... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004261_B04 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IVF_B04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934274 ID=CK934274; Name=CK934274; organism=Citrus sinensis; type=EST; length=728bp
GGGGGAGCGAGCTGAGTGTTTGTCTCGTCGTCCGCCGCAGTTAGGTTGTC
GTTCAGTCTTGGCTTGAAGAAGCAAATTGTCAAACATGAGTCGGCCGATG
GAGGAAGATAATGTCAAAAATGAGGAAGAGGATTTCAACACAGGTCCACT
TTCTGTTTTGATGATGAGTGTTAAAAACAATACCCAGGTGCTTATTAACT
GTCGGAACAACAAGAAGCTTCTTGGTCGTGTGAGAGCTTTTGATCGTCAT
TGCAATATGGTTCTTGAGAATGTCAGGGAGATGTGGACTGAGTTGCCTAG
GACTGGGAAAGGCAAGAAAAAGGCTCTTCCAGTTAACAAGGATAGATTCA
TCAGTAAGATGTTTCTCCGAGGAGATTCTGTGATCATTGTTCTTAGGAAT
CCCAAGTGAAGTACACACCTTGCTTGACAGCCTCAGCAATTTTAACGAAA
GATCTATACGGACAATACTGTTTGTGATGGGTAAAAAATGAGCCAGCAAG
CCTAGATTTGTTTGAAGGATGTTCGCATGGTATTTGTGCTGCCAAGTTTG
GGAGATTGGTTGGAGTATCTTAGGTGTCCTGACATAAGGGTGACTTTTTT
GGTGTGTTGTAAATTCAATGGACTAGAGATGTTATGGTGTGTAGCTCTTT
ACTATTTTCTACTTCTAATGCTCGTTTACTTTTATTAAAATCTTGATCCA
AAAAAAAAAAAAAAAAAAAAAAAAAAAA
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