CK934281

Overview
NameCK934281
Unique NameCK934281
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length886
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934281 vs. ExPASy Swiss-Prot
Match: VP241_ARATH (Vacuolar protein sorting-associated protein 24 homolog 1 OS=Arabidopsis thaliana GN=VPS24-1 PE=2 SV=1)

HSP 1 Score: 328.561 bits (841), Expect = 2.994e-89
Identity = 173/226 (76.55%), Postives = 192/226 (84.96%), Query Frame = 1
Query:  190 VMNMIKPKPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTAIAGETAAQLPEAVRKERVKQSAQTSRXXXXXXXXXXXXXXXKELEEIRARLXKVRS 867
            VMN+IKPKP+P+QLLRDWQRKLRQECRNIERQIRDIQ+EE+NVQKAIK+AAKRNDM SAK+LA+E+V SR+TVNRLYENKAQMNSISMHLGESVAIARTVGHL+KSAEVMKLVNNLMKAP++AATMQEFSKEMTKAGVIEEFVN+A+D ALDS          VDKVLTAIAGETAA+LP AVRKER+K  AQ +                +ELEEIRARL KVRS
Sbjct:    4 VMNIIKPKPDPKQLLRDWQRKLRQECRNIERQIRDIQKEERNVQKAIKEAAKRNDMVSAKALAKEIVSSRRTVNRLYENKAQMNSISMHLGESVAIARTVGHLSKSAEVMKLVNNLMKAPQMAATMQEFSKEMTKAGVIEEFVNEAIDNALDSEDMEEEIDEEVDKVLTAIAGETAAELPVAVRKERIKVPAQKASTSREEEAVAEGVDDEEELEEIRARLAKVRS 229          
BLAST of CK934281 vs. ExPASy Swiss-Prot
Match: VP242_ARATH (Putative vacuolar protein sorting-associated protein 24 homolog 2 OS=Arabidopsis thaliana GN=VPS24-2 PE=2 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 4.981e-60
Identity = 125/198 (63.13%), Postives = 149/198 (75.25%), Query Frame = 1
Query:  274 IERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTAIAGETAAQLPEAVRKERVKQSAQTSRXXXXXXXXXXXXXXXKELEEIRARLXKVRS 867
            I+  + DI+REE+NV KAIKD+ KRND+ +AK+LA+E+V SR+TV RLYENKAQ+NSISMHLGES+A A TVG+L+KS EVMKLVN+LMKAPE+A TMQ FSKEMTK GVIEEFV+DAVD ALDS          VDKVLTAIAGETAA+LPEAVRK+++   AQ +                +ELE IR RL  VRS
Sbjct:    3 IKSLLSDIEREERNVHKAIKDSVKRNDLVTAKALAREIVSSRRTVKRLYENKAQVNSISMHLGESIATAVTVGNLSKSGEVMKLVNSLMKAPEIAVTMQAFSKEMTKTGVIEEFVSDAVDNALDSEDIEEEIEEEVDKVLTAIAGETAAELPEAVRKQKMNVPAQKAETLHGEDAIVEGVDAEEELEAIRYRLANVRS 200          
BLAST of CK934281 vs. ExPASy Swiss-Prot
Match: CHMP3_RAT (Charged multivesicular body protein 3 OS=Rattus norvegicus GN=Vps24 PE=1 SV=3)

HSP 1 Score: 152.14 bits (383), Expect = 3.841e-36
Identity = 74/173 (42.77%), Postives = 111/173 (64.16%), Query Frame = 1
Query:  220 PQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTAIAGETAAQLPEAV 738
            P++L+ +W  K+R+E R ++RQIRDIQREE+ V++++KDAAK+        LA+E++RSRK V++LY +KA MNS+ M +   +A+ R  G L KS EVMK + +L+K PE+ ATM+E SKEM KAG+IEE + D  ++  D           +D++L  I      + P  V
Sbjct:   12 PKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKEVCVVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEAAEMEIDRILFEITAGALGKAPSKV 184          
BLAST of CK934281 vs. ExPASy Swiss-Prot
Match: CHMP3_PONAB (Charged multivesicular body protein 3 OS=Pongo abelii GN=VPS24 PE=2 SV=3)

HSP 1 Score: 152.14 bits (383), Expect = 3.841e-36
Identity = 74/173 (42.77%), Postives = 111/173 (64.16%), Query Frame = 1
Query:  220 PQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTAIAGETAAQLPEAV 738
            P++L+ +W  K+R+E R ++RQIRDIQREE+ V++++KDAAK+        LA+E++RSRK V++LY +KA MNS+ M +   +A+ R  G L KS EVMK + +L+K PE+ ATM+E SKEM KAG+IEE + D  ++  D           +D++L  I      + P  V
Sbjct:   12 PKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCVVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRILFEITAGALGKAPSKV 184          
BLAST of CK934281 vs. ExPASy Swiss-Prot
Match: CHMP3_MOUSE (Charged multivesicular body protein 3 OS=Mus musculus GN=Vps24 PE=1 SV=3)

HSP 1 Score: 152.14 bits (383), Expect = 3.841e-36
Identity = 74/173 (42.77%), Postives = 111/173 (64.16%), Query Frame = 1
Query:  220 PQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTAIAGETAAQLPEAV 738
            P++L+ +W  K+R+E R ++RQIRDIQREE+ V++++KDAAK+        LA+E++RSRK V++LY +KA MNS+ M +   +A+ R  G L KS EVMK + +L+K PE+ ATM+E SKEM KAG+IEE + D  ++  D           +D++L  I      + P  V
Sbjct:   12 PKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKEVCVVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEAAEMEIDRILFEITAGALGKAPSKV 184          
BLAST of CK934281 vs. ExPASy Swiss-Prot
Match: CHMP3_MACFA (Charged multivesicular body protein 3 OS=Macaca fascicularis GN=VPS24 PE=2 SV=3)

HSP 1 Score: 152.14 bits (383), Expect = 3.841e-36
Identity = 74/173 (42.77%), Postives = 111/173 (64.16%), Query Frame = 1
Query:  220 PQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTAIAGETAAQLPEAV 738
            P++L+ +W  K+R+E R ++RQIRDIQREE+ V++++KDAAK+        LA+E++RSRK V++LY +KA MNS+ M +   +A+ R  G L KS EVMK + +L+K PE+ ATM+E SKEM KAG+IEE + D  ++  D           +D++L  I      + P  V
Sbjct:   12 PKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCVVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIRATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEAAEMEIDRILFEITAGALGKAPSKV 184          
BLAST of CK934281 vs. ExPASy Swiss-Prot
Match: CHMP3_BOVIN (Charged multivesicular body protein 3 OS=Bos taurus GN=VPS24 PE=2 SV=4)

HSP 1 Score: 152.14 bits (383), Expect = 3.841e-36
Identity = 74/173 (42.77%), Postives = 111/173 (64.16%), Query Frame = 1
Query:  220 PQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTAIAGETAAQLPEAV 738
            P++L+ +W  K+R+E R ++RQIRDIQREE+ V++++KDAAK+        LA+E++RSRK V++LY +KA MNS+ M +   +A+ R  G L KS EVMK + +L+K PE+ ATM+E SKEM KAG+IEE + D  ++  D           +D++L  I      + P  V
Sbjct:   12 PKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCVVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEAAEMEIDRILFEITAGALGKAPSKV 184          
BLAST of CK934281 vs. ExPASy Swiss-Prot
Match: CHMP3_HUMAN (Charged multivesicular body protein 3 OS=Homo sapiens GN=VPS24 PE=1 SV=3)

HSP 1 Score: 151.754 bits (382), Expect = 5.016e-36
Identity = 74/173 (42.77%), Postives = 111/173 (64.16%), Query Frame = 1
Query:  220 PQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTAIAGETAAQLPEAV 738
            P++L+ +W  K+R+E R ++RQIRDIQREE+ V++++KDAAK+        LA+E++RSRK V++LY +KA MNS+ M +   +A+ R  G L KS EVMK + +L+K PE+ ATM+E SKEM KAG+IEE + D  ++  D           +D++L  I      + P  V
Sbjct:   12 PKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRILFEITAGALGKAPSKV 184          
BLAST of CK934281 vs. ExPASy Swiss-Prot
Match: CHMP3_XENLA (Charged multivesicular body protein 3 OS=Xenopus laevis GN=vps24 PE=2 SV=3)

HSP 1 Score: 149.443 bits (376), Expect = 2.489e-35
Identity = 73/173 (42.20%), Postives = 111/173 (64.16%), Query Frame = 1
Query:  220 PQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTAIAGETAAQLPEAV 738
            P+ L+ +W  K+R+E R I+RQIRDIQRE++ V+++IK++AK+ +  +   LA+E+V+S+K VN+LY +KA MNS+ M +   +A+ R  G L KS EVMK + NL+K PE+ ATM+E SKEM KAG+IEE + D  +   D           +D++L  +      + P  V
Sbjct:   12 PKDLVNEWSLKIRKEMRVIDRQIRDIQREQEKVKRSIKESAKKGNREACVILAKEVVQSKKAVNKLYASKAHMNSVLMSMKNQLAVLRVSGSLQKSTEVMKAMQNLVKLPEIQATMRELSKEMMKAGIIEEMLEDTFEGMEDQDEMEEQAEMEIDRILFEVTAGALGKAPSKV 184          
BLAST of CK934281 vs. ExPASy Swiss-Prot
Match: CHMP3_DANRE (Charged multivesicular body protein 3 OS=Danio rerio GN=vps24 PE=2 SV=3)

HSP 1 Score: 149.443 bits (376), Expect = 2.489e-35
Identity = 73/173 (42.20%), Postives = 111/173 (64.16%), Query Frame = 1
Query:  220 PQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTAIAGETAAQLPEAV 738
            P+ L+ +W  K+R+E R I+RQIRDIQREE+ V+++IKDAAK+        LA+E+++S++ +N+LY +KAQMNS+ + +   +++ R  G L KS EVMK + +L+K PE+ ATM++ SKEM KAG+IEE + D ++   D           VDK+L  I      + P  V
Sbjct:   12 PKDLINEWSLKIRKEMRVIDRQIRDIQREEEKVKRSIKDAAKKGQKDVCIILAKEMIQSKRAINKLYASKAQMNSVLLSMKNQLSVLRVAGALQKSTEVMKAMQSLVKIPEIQATMRDLSKEMMKAGIIEEMLEDTLEGMDDEEEMEEAAEAEVDKILFEITAGALGKAPSKV 184          
The following BLAST results are available for this feature:
BLAST of CK934281 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
VP241_ARATH2.994e-8976.55Vacuolar protein sorting-associated protein 24 hom... [more]
VP242_ARATH4.981e-6063.13Putative vacuolar protein sorting-associated prote... [more]
CHMP3_RAT3.841e-3642.77Charged multivesicular body protein 3 OS=Rattus no... [more]
CHMP3_PONAB3.841e-3642.77Charged multivesicular body protein 3 OS=Pongo abe... [more]
CHMP3_MOUSE3.841e-3642.77Charged multivesicular body protein 3 OS=Mus muscu... [more]
CHMP3_MACFA3.841e-3642.77Charged multivesicular body protein 3 OS=Macaca fa... [more]
CHMP3_BOVIN3.841e-3642.77Charged multivesicular body protein 3 OS=Bos tauru... [more]
CHMP3_HUMAN5.016e-3642.77Charged multivesicular body protein 3 OS=Homo sapi... [more]
CHMP3_XENLA2.489e-3542.20Charged multivesicular body protein 3 OS=Xenopus l... [more]
CHMP3_DANRE2.489e-3542.20Charged multivesicular body protein 3 OS=Danio rer... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004261_B12 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IVF_B12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934281 ID=CK934281; Name=CK934281; organism=Citrus sinensis; type=EST; length=886bp
GGGGAGGCGTCCAGCGATCGACTGTTGCTGGACCTCAGAAAAATAAAAAT
TCAGAAAAAAAAGATACGAATTTGGATTGCGTTTGATGTTCAATTGATCG
GTTGCTGGAAAAAGAGAAGACTTCGAAGATCAGACGAGAAAAATTAGAAA
AAAATAATAGAGATAAAAAAAGCTAAGGAAATGGAAAAAGTTATGAACAT
GATAAAGCCAAAGCCTAATCCGCAACAGCTGTTGAGGGATTGGCAACGTA
AGCTTCGCCAAGAGTGCCGGAACATTGAGCGCCAAATTCGAGATATACAG
AGAGAAGAGAAAAATGTGCAGAAAGCAATTAAAGATGCTGCCAAGAGAAA
CGACATGAGCTCTGCCAAGTCTCTGGCTCAGGAACTCGTCAGATCTAGAA
AGACAGTTAACCGTCTCTATGAAAATAAGGCACAAATGAACTCAATATCG
ATGCACCTAGGAGAAAGTGTAGCGATTGCTCGTACTGTGGGGCATTTGAA
CAAGAGTGCTGAGGTTATGAAACTTGTCAACAATCTCATGAAGGCACCAG
AAGTAGCTGCTACAATGCAAGAGTTCAGCAAAGAAATGACCAAGGCTGGA
GTAATTGAGGAGTTTGTGAATGATGCTGTTGATACAGCACTGGACTCGGA
GGATATTGAAGAGGAGATAGAAGAAGAAGTTGATAAGGTCTTGACTGCAA
TTGCTGGTGAGACTGCAGCACAGCTGCCTGAAGCAGTTAGAAAGGAAAGG
GTGAAGCAATCTGCTCAGACATCTAGAGCAGCACAGGAGGAGGATGCTAT
TGCTGAGGGTATCGATGATGAGAAAGAACTTGAAGAAATAAGAGCCCGGC
TTNGCAAAGTTAGGTCATAACTTAAGCCTTTTNNNN
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