CK934336

Overview
NameCK934336
Unique NameCK934336
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length549
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934336_ssr78 microsatellite CK934336_ssr78:78..89. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3493 contig Csv1_Contig3493:87..635. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934336 vs. ExPASy Swiss-Prot
Match: SMT3_ARATH (Ubiquitin-like protein SMT3 OS=Arabidopsis thaliana GN=SMT3 PE=1 SV=2)

HSP 1 Score: 168.318 bits (425), Expect = 2.136e-41
Identity = 82/92 (89.13%), Postives = 86/92 (93.48%), Query Frame = 3
Query:   96 QEEDKKPVDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMGDGDEIDAMLHQTGGALG 371
            QEEDKKP D  AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSV++NSIAFLFDGRRLR EQTPDEL+M DGDEIDAMLHQTGG+ G
Sbjct:    5 QEEDKKPGDGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDMNSIAFLFDGRRLRAEQTPDELDMEDGDEIDAMLHQTGGSGG 96          
BLAST of CK934336 vs. ExPASy Swiss-Prot
Match: SMT3_ORYSJ (Ubiquitin-like protein SMT3 OS=Oryza sativa subsp. japonica GN=SMT3 PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 1.531e-39
Identity = 81/93 (87.10%), Postives = 84/93 (90.32%), Query Frame = 3
Query:   99 EEDKKPVDQS---AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMGDGDEIDAMLHQTGGAL 368
            EEDKKP       AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSV++N+IAFLFDGRRLRGEQTPDELEM DGDEIDAMLHQTGG L
Sbjct:    6 EEDKKPAGGEGGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDMNAIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGCL 98          
BLAST of CK934336 vs. ExPASy Swiss-Prot
Match: PMT3_SCHPO (Ubiquitin-like protein pmt3/smt3 OS=Schizosaccharomyces pombe GN=pmt3 PE=1 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 1.700e-22
Identity = 50/88 (56.82%), Postives = 65/88 (73.86%), Query Frame = 3
Query:   99 EEDKKPVDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMGDGDEIDAMLHQTGG 362
            ++D KP   + HINLKV GQD NEVFF+IK++T+  KLM  YC RQ   +NS+ FL DG R+R +QTP EL+M DGD+I+A+L Q GG
Sbjct:   26 QQDVKP--STEHINLKVVGQDNNEVFFKIKKTTEFSKLMKIYCARQGKSMNSLRFLVDGERIRPDQTPAELDMEDGDQIEAVLEQLGG 111          
BLAST of CK934336 vs. ExPASy Swiss-Prot
Match: SUMO3_MOUSE (Small ubiquitin-related modifier 3 OS=Mus musculus GN=Sumo3 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.318e-18
Identity = 47/95 (49.47%), Postives = 61/95 (64.21%), Query Frame = 3
Query:   96 QEEDKKPVD-QSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMGDGDEIDAMLHQTGGALGSG 377
            +E+ K+ V  ++ HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEM D D ID    QTGG+   G
Sbjct:    3 EEKPKEGVKTENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGSASRG 97          
BLAST of CK934336 vs. ExPASy Swiss-Prot
Match: SUMO3_XENTR (Small ubiquitin-related modifier 3 OS=Xenopus tropicalis GN=sumo3 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.334e-18
Identity = 47/90 (52.22%), Postives = 59/90 (65.56%), Query Frame = 3
Query:   96 QEEDKKPVD-QSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMGDGDEIDAMLHQTGG 362
            +E+ K+ V  ++ HINLKV GQDG+ V F+IKR T L KLM AYCDRQ + +  I F FDG+ +    TP +LEM D D ID    QTGG
Sbjct:    3 EEKPKEGVKTENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCDRQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 92          
BLAST of CK934336 vs. ExPASy Swiss-Prot
Match: SUMO3_XENLA (Small ubiquitin-related modifier 3 OS=Xenopus laevis GN=sumo3 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.334e-18
Identity = 47/90 (52.22%), Postives = 59/90 (65.56%), Query Frame = 3
Query:   96 QEEDKKPVD-QSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMGDGDEIDAMLHQTGG 362
            +E+ K+ V  ++ HINLKV GQDG+ V F+IKR T L KLM AYCDRQ + +  I F FDG+ +    TP +LEM D D ID    QTGG
Sbjct:    3 EEKPKEGVKTENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCDRQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 92          
BLAST of CK934336 vs. ExPASy Swiss-Prot
Match: SUMO3_BOVIN (Small ubiquitin-related modifier 3 OS=Bos taurus GN=SUMO3 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.334e-18
Identity = 50/101 (49.50%), Postives = 64/101 (63.37%), Query Frame = 3
Query:   96 QEEDKKPVD-QSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMGDGDEIDAMLHQTGGA------LGSG 377
            +E+ K+ V  ++ HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEM D D ID    QTGG+      LGSG
Sbjct:    3 EEKPKEGVKTENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGSRVASCLLGSG 103          
BLAST of CK934336 vs. ExPASy Swiss-Prot
Match: SUMO2_RAT (Small ubiquitin-related modifier 2 OS=Rattus norvegicus GN=Sumo2 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 9.655e-18
Identity = 46/91 (50.55%), Postives = 57/91 (62.64%), Query Frame = 3
Query:  105 DKKP-----VDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMGDGDEIDAMLHQTGG 362
            D+KP      + + HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEM D D ID    QTGG
Sbjct:    3 DEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 93          
BLAST of CK934336 vs. ExPASy Swiss-Prot
Match: SUMO2_PIG (Small ubiquitin-related modifier 2 OS=Sus scrofa GN=SUMO2 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 9.655e-18
Identity = 46/91 (50.55%), Postives = 57/91 (62.64%), Query Frame = 3
Query:  105 DKKP-----VDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMGDGDEIDAMLHQTGG 362
            D+KP      + + HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEM D D ID    QTGG
Sbjct:    3 DEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 93          
BLAST of CK934336 vs. ExPASy Swiss-Prot
Match: SUMO2_MOUSE (Small ubiquitin-related modifier 2 OS=Mus musculus GN=Sumo2 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 9.655e-18
Identity = 46/91 (50.55%), Postives = 57/91 (62.64%), Query Frame = 3
Query:  105 DKKP-----VDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMGDGDEIDAMLHQTGG 362
            D+KP      + + HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEM D D ID    QTGG
Sbjct:    3 DEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 93          
The following BLAST results are available for this feature:
BLAST of CK934336 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
SMT3_ARATH2.136e-4189.13Ubiquitin-like protein SMT3 OS=Arabidopsis thalian... [more]
SMT3_ORYSJ1.531e-3987.10Ubiquitin-like protein SMT3 OS=Oryza sativa subsp.... [more]
PMT3_SCHPO1.700e-2256.82Ubiquitin-like protein pmt3/smt3 OS=Schizosaccharo... [more]
SUMO3_MOUSE3.318e-1849.47Small ubiquitin-related modifier 3 OS=Mus musculus... [more]
SUMO3_XENTR4.334e-1852.22Small ubiquitin-related modifier 3 OS=Xenopus trop... [more]
SUMO3_XENLA4.334e-1852.22Small ubiquitin-related modifier 3 OS=Xenopus laev... [more]
SUMO3_BOVIN4.334e-1849.50Small ubiquitin-related modifier 3 OS=Bos taurus G... [more]
SUMO2_RAT9.655e-1850.55Small ubiquitin-related modifier 2 OS=Rattus norve... [more]
SUMO2_PIG9.655e-1850.55Small ubiquitin-related modifier 2 OS=Sus scrofa G... [more]
SUMO2_MOUSE9.655e-1850.55Small ubiquitin-related modifier 2 OS=Mus musculus... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004260_D08 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIIF_D08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934336 ID=CK934336; Name=CK934336; organism=Citrus sinensis; type=EST; length=549bp
GGGGCTAACCAGAGGCGCAGAAACAAAGAGAGGGTAAAATTCAATTCTAA
GAACCTGTGAGGATGTCAGCGACCGGTGGCGGCGGCGGCGGTGGTCAGGA
GGAGGACAAGAAGCCCGTCGATCAGTCGGCGCACATTAACCTCAAAGTCA
AGGGCCAGGATGGCAATGAGGTGTTTTTTAGAATTAAGCGAAGCACCCAG
TTGAAAAAACTCATGAATGCCTACTGTGATCGGCAGTCGGTGGAGTTAAA
CTCTATTGCTTTCTTGTTTGATGGGCGGAGACTCCGAGGAGAGCAGACTC
CAGATGAGCTTGAGATGGGGGATGGAGATGAAATTGATGCAATGCTGCAT
CAGACTGGAGGTGCGCTTGGAAGCGGTTAGCTGCAGTTTGAAATATTTTG
AGCATCGCTGGCGGACTTGATGTTTGAGTTTTTTAAATTAGCCTATATCT
ATGGAAATATTACTGTAAATGATGACTTGGATCTTATAATTAACTTGAAT
TTAAGTCATGGTTTATTACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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