CK934339

Overview
NameCK934339
Unique NameCK934339
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length845
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1408 contig Csv1_Contig1408:4..848. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934339 vs. ExPASy Swiss-Prot
Match: RTNLD_ARATH (Reticulon-like protein B4 OS=Arabidopsis thaliana GN=RTNLB4 PE=1 SV=1)

HSP 1 Score: 299.671 bits (766), Expect = 1.373e-80
Identity = 140/209 (66.99%), Postives = 173/209 (82.78%), Query Frame = 3
Query:  219 AFKSKVFRLFGRERPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINESPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSVVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKIDSFGEKATIEIKKQYAVFDEKVLKKVLSRIPKGAL 845
            +FKSK++RLFGRE+P+H VLG GKPADIFLWRNKK+S GVLG  TA WVLFEL EYHL+  +CH +I +LA LFLWSNA TFI++S P IP V +PE  +L+  S LR EINR L +LR IASG+D+KKF+ VIAGLW+LS++G+  NF+TLFY   VLL T+PV+YEKYEDK+D++GEKA  EIKKQYAV DEKVL+KV+S+IP+GAL
Sbjct:   44 SFKSKIYRLFGREKPVHKVLGGGKPADIFLWRNKKVSGGVLGAVTASWVLFELFEYHLLAFLCHFAIFALAALFLWSNACTFIHKSTPHIPEVHIPEDPILQLVSGLRIEINRGLTLLRNIASGKDVKKFILVIAGLWVLSIIGSCYNFLTLFYTATVLLFTIPVLYEKYEDKVDAYGEKAMREIKKQYAVLDEKVLRKVISKIPRGAL 252          
BLAST of CK934339 vs. ExPASy Swiss-Prot
Match: RTNLC_ARATH (Reticulon-like protein B3 OS=Arabidopsis thaliana GN=RTNLB3 PE=1 SV=1)

HSP 1 Score: 298.13 bits (762), Expect = 3.995e-80
Identity = 146/208 (70.19%), Postives = 172/208 (82.69%), Query Frame = 3
Query:  219 AFKSKVFRLFGRERPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINESPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSVVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKIDSFGEKATIEIKKQYAVFDEKVLKKVLSRIPKGA 842
            + K+K++RLFGRE+P+H + G GKPADIFLWRNKK+S GVLG AT  W+LFELLEY+L+TL  HISIL+LAVLFLWS+ASTFI++SP  IP V +PE  VL+ AS LR EINR   VLR+IASGRDLKKFL VIAGLW+LS VG+ CNF+TL YI  VLL T+PV+YEKYEDK+D FGEKA  EIKKQY  FD KVL KV+S+IPKGA
Sbjct:   40 SLKTKIYRLFGREQPLHKLFGGGKPADIFLWRNKKVSGGVLGAATVSWILFELLEYNLLTLFGHISILALAVLFLWSSASTFIHKSPLHIPEVHIPEDVVLQLASGLRIEINRGFTVLRDIASGRDLKKFLLVIAGLWVLSKVGSSCNFLTLIYIATVLLFTIPVLYEKYEDKVDDFGEKAMREIKKQYVEFDVKVLSKVMSKIPKGA 247          
BLAST of CK934339 vs. ExPASy Swiss-Prot
Match: RTNLA_ARATH (Reticulon-like protein B1 OS=Arabidopsis thaliana GN=RTNLB1 PE=1 SV=1)

HSP 1 Score: 291.197 bits (744), Expect = 4.883e-78
Identity = 142/209 (67.94%), Postives = 172/209 (82.30%), Query Frame = 3
Query:  219 AFKSKVFRLFGRERPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINESPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSVVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKIDSFGEKATIEIKKQYAVFDEKVLKKVLSRIPKGAL 845
            + KSKV+RLFGRE+P+H VLG GKPADIF+W+NKK+S GVLGGATA WV+FEL+EYHL+TL+CH+ I+ LAVLFLWSNA+ FIN+SPP+IP V +PE+ +L+ AS LR EINR  + LREIASGRDLKKFL  IAGLW+LS++G   NF+TL YI  VLL TVP+ Y+KYEDK+D  GEKA IE+KKQYAV DE    KVLS+IP G L
Sbjct:   65 SMKSKVYRLFGREQPVHKVLGGGKPADIFMWKNKKMSGGVLGGATAAWVVFELMEYHLLTLLCHVMIVVLAVLFLWSNATMFINKSPPKIPEVHIPEEPILQLASGLRIEINRGFSSLREIASGRDLKKFLIAIAGLWVLSILGGCFNFLTLAYIALVLLFTVPLAYDKYEDKVDPLGEKAMIELKKQYAVLDE----KVLSKIPLGPL 269          
BLAST of CK934339 vs. ExPASy Swiss-Prot
Match: RTNLB_ARATH (Reticulon-like protein B2 OS=Arabidopsis thaliana GN=RTNLB2 PE=1 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 1.571e-76
Identity = 136/209 (65.07%), Postives = 172/209 (82.30%), Query Frame = 3
Query:  219 AFKSKVFRLFGRERPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINESPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSVVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKIDSFGEKATIEIKKQYAVFDEKVLKKVLSRIPKGAL 845
            + KSKV+RLFGRERP+H VLG GKPADIF+W++KK+S GV GGAT  WVLFEL+EYHL+TL+CH+ I++LAVLFLWSNA+ FI++SPP+IP V +PE+ +L+ AS LR EINR ++ LREIASGRD+KKFL  IAGLW+LS++G   +F+TL YI  VLL TVP+ Y+KYEDK+DS+GEKA  E+KKQYAV D     KV S+IP+G L
Sbjct:   61 SLKSKVYRLFGRERPVHKVLGGGKPADIFMWKDKKMSGGVFGGATVAWVLFELMEYHLLTLLCHVMIVALAVLFLWSNATMFIHKSPPKIPEVHIPEEPLLQLASGLRIEINRGISSLREIASGRDIKKFLSAIAGLWVLSILGGCYSFLTLAYIALVLLFTVPLFYDKYEDKVDSYGEKAMAELKKQYAVLD----AKVFSKIPRGPL 265          
BLAST of CK934339 vs. ExPASy Swiss-Prot
Match: RTNLE_ARATH (Reticulon-like protein B5 OS=Arabidopsis thaliana GN=RTNLB5 PE=1 SV=1)

HSP 1 Score: 281.952 bits (720), Expect = 2.962e-75
Identity = 137/243 (56.38%), Postives = 180/243 (74.07%), Query Frame = 3
Query:   93 MAEHAPEHESSDKSLVEKITXXXXXXXXXXXXXXXXXXXXXX-AFKSKVFRLFGRERPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINESPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSVVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKIDSFGEKATIEIKKQYAVFDEKVLKKV 818
            MAE   +   +++SL+EKI+                       A K+K++R+FGRE+P+H VLG GKPAD+FLWR+KK+S  VLG ATA+WVLFEL+EYHL++L+CHISIL+L  LFLWSNA T IN++ P+IP + +PE+  L  AS+LR E+N+A  +LR IA GRDLKKFL V+ GLW++SVVGNW NF+TL YI FV+LHTVP++YEK+EDK+D   EKA  E++KQY VFDEKVL K+
Sbjct:    1 MAEEIEKSVPTEESLMEKISEKIHHHDSSSSSESEYEKPDSPSAVKAKIYRMFGREKPVHKVLGGGKPADVFLWRDKKLSGAVLGVATAIWVLFELVEYHLLSLLCHISILALGGLFLWSNAHTLINKTSPQIPEIHVPEEAFLVVASSLRNELNQAFVILRSIALGRDLKKFLMVVVGLWIISVVGNWFNFLTLVYICFVILHTVPMLYEKHEDKVDPLAEKAMKELQKQYVVFDEKVLSKI 243          
BLAST of CK934339 vs. ExPASy Swiss-Prot
Match: RTNLF_ARATH (Reticulon-like protein B6 OS=Arabidopsis thaliana GN=RTNLB6 PE=1 SV=1)

HSP 1 Score: 269.626 bits (688), Expect = 1.521e-71
Identity = 134/243 (55.14%), Postives = 172/243 (70.78%), Query Frame = 3
Query:   93 MAEHAPEHESSDKSLVEKITXXXXXXXXXXXXXXXXXXXXXX-AFKSKVFRLFGRERPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINESPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSVVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKIDSFGEKATIEIKKQYAVFDEKVLKKV 818
            MAE   +    ++SL+EKI                        A K+K++RLFGRE+P+H VLG G PAD+FLWR+KK+SA VLG ATA+WVLFEL+EYH ++LVCHI I +LA LFL SNA  F+N++PP+IP + + E+  L   SALR E+N+A  +LR IA GRDLKKFL V+ GLW++SVVGNW NF+TL YI FV+LHTVP++YEK+EDK+D   EK   E+KK Y VFDEKVL K+
Sbjct:    1 MAEELEKSMHKEESLMEKIADKIHDHDSSSSSDSEHEKPESPSALKAKIYRLFGREKPVHKVLGGGLPADVFLWRDKKLSASVLGVATAIWVLFELVEYHFLSLVCHILIFALAALFLLSNAHAFMNKTPPKIPEIHIKEEHFLMIVSALRNELNQAFVILRSIALGRDLKKFLMVVFGLWIISVVGNWFNFLTLVYICFVVLHTVPMLYEKHEDKVDPVAEKTLKELKKHYMVFDEKVLSKL 243          
BLAST of CK934339 vs. ExPASy Swiss-Prot
Match: RTNLG_ARATH (Reticulon-like protein B7 OS=Arabidopsis thaliana GN=RTNLB7 PE=2 SV=2)

HSP 1 Score: 218.779 bits (556), Expect = 3.080e-56
Identity = 104/195 (53.33%), Postives = 142/195 (72.82%), Query Frame = 3
Query:  234 VFRLFGRERPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINESPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSVVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKIDSFGEKATIEIKKQYAVFDEKVLKKV 818
            ++R+FGRERPIH VLG GKPAD+ LWR+KK++ G+L   T +W+LF      L+T +C  SIL L + FLWSNA   +N+SP  +  + +PEK +L+ ASA+ +E+N A A LR IA  RD+K F+  + GLWL+SV+GNW +F++L YI FVL+HTVP++YEKYED+ID   EKA IE+KK Y VF+ K L K+
Sbjct:   51 IYRMFGRERPIHMVLGGGKPADVLLWRDKKVTLGLLSAVTVIWLLFGFGGRRLLTSLCRGSILFLLLSFLWSNA---LNKSPENMMDIYIPEKPLLQAASAMTFELNCAFATLRSIALERDIKNFVMAVIGLWLVSVIGNWFSFLSLLYICFVLIHTVPMLYEKYEDEIDPIAEKAVIEMKKHYQVFEAKFLSKI 242          
BLAST of CK934339 vs. ExPASy Swiss-Prot
Match: RTNLH_ARATH (Reticulon-like protein B8 OS=Arabidopsis thaliana GN=RTNLB8 PE=1 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 6.011e-52
Identity = 98/204 (48.04%), Postives = 139/204 (68.14%), Query Frame = 3
Query:  228 SKVFRLFGRERPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINESPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSVVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKIDSFGEKATIEIKKQYAVFDEKVLKKVLSRIPKG 839
            S+  RLF R++PIHHVLG GK AD+ LWRNKKISA VL GATA+WVLFE + +H ++LVC+  +L +   F+WSNAS F+N S   +P + LP+ F  E   A+  E+NR L  L+++A   +LK+FL  + GLW+ ++VG+ CNF+T+ YI FV  HT+PV+YE+YED++D F +   ++    Y    +K+    LSRIP G
Sbjct:   40 SRFNRLFDRQKPIHHVLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWINFHFLSLVCYALLLGMIAQFVWSNASGFLNRSQSRVPRLVLPKDFFAEVGVAVGKEVNRGLLFLQDLACKGNLKQFLMAVIGLWVAAMVGSCCNFLTVLYIGFVGAHTMPVLYERYEDEVDGFMDSMIMKFHSHY----KKLDTGFLSRIPSG 239          
BLAST of CK934339 vs. ExPASy Swiss-Prot
Match: RTNLI_ARATH (Reticulon-like protein B9 OS=Arabidopsis thaliana GN=RTNLB9 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 8.143e-41
Identity = 85/205 (41.46%), Postives = 124/205 (60.49%), Query Frame = 3
Query:  231 KVFRLFGRERPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINESPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSVVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKIDSFGEKATIEIKKQYAVFDEKVLKKVLSRIPKGAL 845
            K  +LF R+R IH + G GK ADI LWR  KI+A ++ G + +W L E++EY+ ITL+CH S+ S+   F+WS AS F+N   P IP V L E    + A +     N+ L  L ++A GRD   F      L+++S++G + NFV L +I FV + T+PV+YE YED +D+   K   ++KK Y    +KV   VLS+IP+G +
Sbjct:   19 KTTKLFTRQRSIHSIFGGGKVADILLWREPKIAATLVIGVSILWFLMEVVEYNFITLICHASMTSMLFFFIWSTASDFLNWERPLIPEVVLDESSFKQLARSFHVRFNQILTKLLDVACGRDPPLFFLTTISLYIVSIIGTYFNFVNLLFIGFVSMQTLPVMYEMYEDDVDTAAGKLMRKMKKLY----KKVDTNVLSKIPRGTV 219          
BLAST of CK934339 vs. ExPASy Swiss-Prot
Match: RTNLJ_ARATH (Reticulon-like protein B10 OS=Arabidopsis thaliana GN=RTNLB10 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.066e-32
Identity = 69/191 (36.13%), Postives = 110/191 (57.59%), Query Frame = 3
Query:  255 ERPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINESPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSVVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKIDSFGEKATIEIKKQYAVFDEKVLKKVLSR 827
            E  +H  +  G  AD+ +W+N++    +LG  T +W LFE   Y     V +  +LS+ +LFLW+ ++   N   P++P + + E+FV   A A+R  IN  LAV REI  GR+ K+   V   LW +S VGN+ NF+T+ Y+  VL   +P +YE+Y+D ID         I+ QY   DE++L+K++++
Sbjct:    2 EESVHQSIRFGSVADLIMWKNRRGGFLLLGSTTLLWFLFEKCGYSFFPFVVNTQLLSVVILFLWAKSAILFNRPMPQLPNLEITEEFVFMVADAIRVWINTVLAVAREIYVGRNAKQLFRVSVVLWTVSFVGNFLNFLTILYLGVVLSLLIPFLYERYQDLIDEKLSLTHRVIQTQYRKIDERLLQKIIAK 192          
The following BLAST results are available for this feature:
BLAST of CK934339 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
RTNLD_ARATH1.373e-8066.99Reticulon-like protein B4 OS=Arabidopsis thaliana ... [more]
RTNLC_ARATH3.995e-8070.19Reticulon-like protein B3 OS=Arabidopsis thaliana ... [more]
RTNLA_ARATH4.883e-7867.94Reticulon-like protein B1 OS=Arabidopsis thaliana ... [more]
RTNLB_ARATH1.571e-7665.07Reticulon-like protein B2 OS=Arabidopsis thaliana ... [more]
RTNLE_ARATH2.962e-7556.38Reticulon-like protein B5 OS=Arabidopsis thaliana ... [more]
RTNLF_ARATH1.521e-7155.14Reticulon-like protein B6 OS=Arabidopsis thaliana ... [more]
RTNLG_ARATH3.080e-5653.33Reticulon-like protein B7 OS=Arabidopsis thaliana ... [more]
RTNLH_ARATH6.011e-5248.04Reticulon-like protein B8 OS=Arabidopsis thaliana ... [more]
RTNLI_ARATH8.143e-4141.46Reticulon-like protein B9 OS=Arabidopsis thaliana ... [more]
RTNLJ_ARATH1.066e-3236.13Reticulon-like protein B10 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004260_C06 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIIF_C06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934339 ID=CK934339; Name=CK934339; organism=Citrus sinensis; type=EST; length=845bp
GGGGTTCCCACCGAGTCTCGCTCTCTCTCGTTCTAGAGTCTAGTACATTT
TTCAATTCATTTTCATCGGCGCTTACTCGGCGGCAGAGATCTATGGCGGA
ACATGCACCTGAGCACGAATCATCCGACAAATCACTGGTGGAGAAGATCA
CGGATAAGATCCATGGCCACGACTCCTCGTCATCTGACTCCGATGACGAC
AAGCCGTCGTCTATTGACGCCTTTAAGTCCAAAGTATTCAGGCTCTTCGG
AAGAGAAAGACCTATTCACCATGTCCTCGGAGCTGGAAAACCTGCTGATA
TTTTCCTATGGAGGAACAAGAAAATATCTGCTGGTGTGCTAGGTGGAGCC
ACTGCAATGTGGGTTCTCTTTGAGTTGCTGGAATACCATTTAATCACTTT
GGTCTGCCATATATCGATTCTCTCTCTGGCTGTTCTCTTCCTGTGGTCCA
ATGCATCCACATTTATCAACGAATCACCGCCAGAGATTCCAGTTGTTACA
CTTCCTGAGAAGTTTGTCCTTGAATTCGCCTCTGCCTTGAGGTATGAAAT
CAACCGAGCCTTGGCTGTCCTGCGGGAAATTGCATCTGGAAGGGACTTGA
AGAAGTTTCTTGGTGTCATTGCTGGCTTGTGGCTTTTGTCTGTTGTCGGT
AATTGGTGCAACTTCGTGACATTATTCTACATTGTATTTGTTTTGCTACA
CACCGTGCCCGTGATTTATGAGAAGTACGAGGACAAGATTGATTCATTTG
GTGAGAAGGCAACGATTGAGATCAAGAAGCAATATGCAGTCTTTGATGAA
AAGGTTTTGAAGAAGGTTTTGAGTCGAATTCCCAAAGGTGCATTG
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