CK934342

Overview
NameCK934342
Unique NameCK934342
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length890
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934342_ssr33 microsatellite CK934342_ssr33:33..58. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9537 contig Csv1_Contig9537:1..888. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934342 vs. ExPASy Swiss-Prot
Match: HAT4_ARATH (Homeobox-leucine zipper protein HAT4 OS=Arabidopsis thaliana GN=HAT4 PE=1 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 5.339e-70
Identity = 148/235 (62.98%), Postives = 171/235 (72.77%), Query Frame = 3
Query:  192 MAEKDDLGLSLSLSFPQNHHSLQLNLMPSSACSTSPSGFSL-QKTPWNEALFPPSDPNSESCRAETRSFLRGIDVNRLPSHAD-NEEEXXXXXXXXXXXXXXGKRSEREPNGDELEMERACSRGISDDEDGDTSRKKLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQFYMQMT 890
            M EKDDLGLSL L+FP+   +L+ N  PS + + S S F L +++ WNE+ F  S PNS+S + ETR+F+RGIDVNR PS A+  +E+              GKRSERE + D        SRGISDDEDGD SRKKLRLSKDQSAILEE+FK+H+TLNP          GLR RQVEVWFQNRRARTKLKQTEVDCEFL+RCCENLTEENRRLQKEV ELRALKLSPQFYM M+
Sbjct:    2 MFEKDDLGLSLGLNFPKKQINLKSN--PSVSVTPSSSSFGLFRRSSWNES-FTSSVPNSDSSQKETRTFIRGIDVNRPPSTAEYGDEDAGVSSPNSTVSSSTGKRSEREEDTDPQG-----SRGISDDEDGDNSRKKLRLSKDQSAILEETFKDHSTLNPKQKQALAKQLGLRARQVEVWFQNRRARTKLKQTEVDCEFLRRCCENLTEENRRLQKEVTELRALKLSPQFYMHMS 228          
BLAST of CK934342 vs. ExPASy Swiss-Prot
Match: HAT2_ARATH (Homeobox-leucine zipper protein HAT2 OS=Arabidopsis thaliana GN=HAT2 PE=2 SV=2)

HSP 1 Score: 232.646 bits (592), Expect = 2.248e-60
Identity = 137/246 (55.69%), Postives = 155/246 (63.01%), Query Frame = 3
Query:  192 MAEKDDLGLSLSLSFPQNHHSLQLNLMPSSACSTSPSGFSLQKTPWNEALFPPSDPNSESCRAETRSFLRGIDVNRLPSHADNEEEXXXXXXXXXXXXXX-GKRSERE----------PNGDELEMERACSRGISDDED--GDTSRKKLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQFYMQMT 890
            M  K+DLGLSLSL F QNH+ LQ+NL P+S+ S +     LQ+ PWN+   P SD             LR IDVN  PS  + EE+               GKRSERE           + DE+  +R  SRG SD+E+  G+TSRKKLRLSKDQSA LEE+FKEHNTLNP           L  RQVEVWFQNRRARTKLKQTEVDCE+LKRC E LTEENRRLQKE  ELR LKLSPQFY QMT
Sbjct:    2 MMGKEDLGLSLSLGFSQNHNPLQMNLNPNSSLSNN-----LQRLPWNQTFDPTSD-------------LRKIDVNSFPSTVNCEEDTGVSSPNSTISSTISGKRSEREGISGTGVGSGDDHDEITPDRGYSRGTSDEEEDGGETSRKKLRLSKDQSAFLEETFKEHNTLNPKQKLALAKKLNLTARQVEVWFQNRRARTKLKQTEVDCEYLKRCVEKLTEENRRLQKEAMELRTLKLSPQFYGQMT 229          
BLAST of CK934342 vs. ExPASy Swiss-Prot
Match: HAT1_ARATH (Homeobox-leucine zipper protein HAT1 OS=Arabidopsis thaliana GN=HAT1 PE=2 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 1.044e-57
Identity = 138/246 (56.10%), Postives = 160/246 (65.04%), Query Frame = 3
Query:  192 MAEKDDLGLSLSLSFPQNHHSLQLNLMPSSACSTSPSGFSLQKTPWNEALFPPSDPNSESCRAETRSFLRGIDVNRLPSHADNEEEXXXXXXXXXXXXXX-GKR--SEREPN-----GDELE--MERACSRGISDDED---GDTSRKKLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQFYMQMT 890
            M  K+DLGLSLSL F QNH  LQLNL P+S    SP   +LQ  PWN+ L   SD   +        FLR IDVN LP+  D EEE               GKR  +ERE       GD+L+  ++R+ SRG SD+E+   G+T RKKLRLSKDQSA+LE++FKEHNTLNP          GL  RQVEVWFQNRRARTKLKQTEVDCE+LKRC E LTEENRRL+KE  ELRALKLSP+ Y QM+
Sbjct:    2 MMGKEDLGLSLSLGFAQNH-PLQLNLKPTS----SPMS-NLQMFPWNQTLVSSSDQQKQQ-------FLRKIDVNSLPTTVDLEEETGVSSPNSTISSTVSGKRRSTEREGTSGGGCGDDLDITLDRSSSRGTSDEEEDYGGETCRKKLRLSKDQSAVLEDTFKEHNTLNPKQKLALAKKLGLTARQVEVWFQNRRARTKLKQTEVDCEYLKRCVEKLTEENRRLEKEAAELRALKLSPRLYGQMS 234          
BLAST of CK934342 vs. ExPASy Swiss-Prot
Match: HAT3_ARATH (Homeobox-leucine zipper protein HAT3 OS=Arabidopsis thaliana GN=HAT3 PE=2 SV=2)

HSP 1 Score: 211.075 bits (536), Expect = 7.006e-54
Identity = 135/265 (50.94%), Postives = 163/265 (61.51%), Query Frame = 3
Query:  192 MAEKDD---LGLSLSLSFPQNHHSLQLNLMPSSACSTSPSGFSLQKTPWNEA---------LFPPSDPNSESCRAETRSFLRGIDVNRLPS----HADNEEEXXXXXXXXXXXXXXGKRSEREPNG----------DELEMERA-CSRGI-SDDEDG-----DTSRKKLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQFYMQM 887
            M+E+DD   L LSLSL F Q   S +LN MP ++ ++S     +Q++ +N           +F  S+ NS+      RSFLRGIDVNR PS      ++E                GK+SERE             ++ E+ERA CS G  SDDEDG     D+SRKKLRLSK+Q+ +LEE+FKEH+TLNP           LR RQVEVWFQNRRARTKLKQTEVDCE+LKRCCENLT+ENRRLQKEV ELRALKLSP  YM M
Sbjct:    1 MSERDDGLGLSLSLSLGFNQKDPSSRLNPMPLASYASSSHMQHMQQSNYNHPQKIQNTWINMFQSSERNSDM-----RSFLRGIDVNRAPSTVVVDVEDEGAGVSSPNSTVSSVMSGKKSERELMAAAGAVGGGRVEDNEIERASCSLGGGSDDEDGSGNGDDSSRKKLRLSKEQALVLEETFKEHSTLNPKQKMALAKQLNLRTRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTDENRRLQKEVSELRALKLSPHLYMHM 260          
BLAST of CK934342 vs. ExPASy Swiss-Prot
Match: ATHB4_ARATH (Homeobox-leucine zipper protein ATHB-4 OS=Arabidopsis thaliana GN=ATHB-4 PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 9.469e-51
Identity = 135/263 (51.33%), Postives = 153/263 (58.17%), Query Frame = 3
Query:  192 MAEKDD-LGLSLSL-SFPQNHHSLQLNLMPSSACSTSPS------------GFSLQKTPWNEALFPPSDPNSESCR--AETRSFLRGIDVNRLPSHAD----NEEEXXXXXXXXXXXXXXGKRSEREP--NGDELEMERA-CSRGI----SDDEDG---DTSRKKLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQFYMQMT 890
            M E+DD LGLSLSL +  Q   SL+LNLMP +  S+S S               +    W   LF  S     +    ++  SFLRG +VNR  S        EE               G + +      GDE E ERA CSRG     SDDEDG   D SRKKLRLSKDQ+ +LEE+FKEH+TLNP           LR RQVEVWFQNRRARTKLKQTEVDCE+LKRCC+NLTEENRRLQKEV ELRALKLSP  YM MT
Sbjct:    1 MGERDDGLGLSLSLGNSQQKEPSLRLNLMPLTTSSSSSSFQHMHNQNNNSHPQKIHNISWTH-LFQSSGIKRTTAERNSDAGSFLRGFNVNRAQSSVAVVDLEEEAAVVSSPNSAVSSLSGNKRDLAVARGGDENEAERASCSRGGGSGGSDDEDGGNGDGSRKKLRLSKDQALVLEETFKEHSTLNPKQKLALAKQLNLRARQVEVWFQNRRARTKLKQTEVDCEYLKRCCDNLTEENRRLQKEVSELRALKLSPHLYMHMT 262          
BLAST of CK934342 vs. ExPASy Swiss-Prot
Match: HOX11_ORYSJ (Homeobox-leucine zipper protein HOX11 OS=Oryza sativa subsp. japonica GN=HOX11 PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 9.491e-43
Identity = 104/207 (50.24%), Postives = 123/207 (59.42%), Query Frame = 3
Query:  324 PWNEALFPPSDPNSESCRAETRSFLRGIDVNRLPSHA---------DNEEEXXXXXXXXXXXXXXGKRSEREPNGDELEM----------ERACSRGISDDEDGDTSRKKLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQFYMQM 887
            PW     PP  P+SES   E  +  RG DVNR PS           + +++              G     + +G  L            +R+CSR  SD++DG ++RKKLRLSK+QSA LEESFKEH+TLNP           LRPRQVEVWFQNRRARTKLKQTEVDCE+LKRCCE LTEENRRLQKE+ ELRALK    FYM +
Sbjct:   76 PWP----PPPPPSSESRHLEAST--RGFDVNRPPSSGGGGGGGGAEEEQDDVAGAALSSSPNNSAGSFPMDDFSGHGLGGNDAAPGGGGGDRSCSRA-SDEDDGGSARKKLRLSKEQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELAELRALKTVHPFYMHL 275          
BLAST of CK934342 vs. ExPASy Swiss-Prot
Match: HOX17_ORYSJ (Homeobox-leucine zipper protein HOX17 OS=Oryza sativa subsp. japonica GN=HOX17 PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 2.114e-42
Identity = 95/127 (74.80%), Postives = 100/127 (78.74%), Query Frame = 3
Query:  531 EMERACSRGI--SDDEDG----DTSRKKLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKL-SPQFYMQMT 890
            E ERA  RG   SD+EDG    D SRKKLRLSKDQSA+LE+SF+EH TLNP          GLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCE LTEENRRLQKEVQELRALKL SP  YM M+
Sbjct:   56 EEERAGLRGGGGSDEEDGGCGIDGSRKKLRLSKDQSAVLEDSFREHPTLNPRQKATLAQQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRRLQKEVQELRALKLVSPHLYMNMS 182          
BLAST of CK934342 vs. ExPASy Swiss-Prot
Match: HOX17_ORYSI (Homeobox-leucine zipper protein HOX17 OS=Oryza sativa subsp. indica GN=HOX17 PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 2.114e-42
Identity = 95/127 (74.80%), Postives = 100/127 (78.74%), Query Frame = 3
Query:  531 EMERACSRGI--SDDEDG----DTSRKKLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKL-SPQFYMQMT 890
            E ERA  RG   SD+EDG    D SRKKLRLSKDQSA+LE+SF+EH TLNP          GLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCE LTEENRRLQKEVQELRALKL SP  YM M+
Sbjct:   56 EEERAGLRGGGGSDEEDGGCGIDGSRKKLRLSKDQSAVLEDSFREHPTLNPRQKATLAQQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRRLQKEVQELRALKLVSPHLYMNMS 182          
BLAST of CK934342 vs. ExPASy Swiss-Prot
Match: HAT14_ARATH (Homeobox-leucine zipper protein HAT14 OS=Arabidopsis thaliana GN=HAT14 PE=2 SV=3)

HSP 1 Score: 171.014 bits (432), Expect = 8.034e-42
Identity = 88/132 (66.67%), Postives = 103/132 (78.03%), Query Frame = 3
Query:  504 EREPNGDEL--EMERACSRGISDDEDGD--TSRKKLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQFYMQM 887
            ER  N  ++  E+ER+ SR  ++D D +  ++RKKLRLSKDQSA LE+SFKEH+TLNP           LRPRQVEVWFQNRRARTKLKQTEVDCE+LKRCCE+LTEENRRLQKEV+ELR LK S  FYMQ+
Sbjct:  157 ERRSNKRDIDDEVERSASRASNEDNDDENGSTRKKLRLSKDQSAFLEDSFKEHSTLNPKQKIALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCESLTEENRRLQKEVKELRTLKTSTPFYMQL 288          
BLAST of CK934342 vs. ExPASy Swiss-Prot
Match: HOX11_ORYSI (Homeobox-leucine zipper protein HOX11 OS=Oryza sativa subsp. indica GN=HOX11 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 3.053e-41
Identity = 84/117 (71.79%), Postives = 95/117 (81.20%), Query Frame = 3
Query:  537 ERACSRGISDDEDGDTSRKKLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQFYMQM 887
            +R+CSR  SD++DG ++RKKLRLSK+QSA LEESFKEH+TLNP           LRPRQVEVWFQNRRARTKLKQTEVDCE+LKRCCE LTEENRRLQKE+ ELRALK    FYM +
Sbjct:   73 DRSCSRA-SDEDDGGSARKKLRLSKEQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELAELRALKTVHPFYMHL 188          
The following BLAST results are available for this feature:
BLAST of CK934342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
HAT4_ARATH5.339e-7062.98Homeobox-leucine zipper protein HAT4 OS=Arabidopsi... [more]
HAT2_ARATH2.248e-6055.69Homeobox-leucine zipper protein HAT2 OS=Arabidopsi... [more]
HAT1_ARATH1.044e-5756.10Homeobox-leucine zipper protein HAT1 OS=Arabidopsi... [more]
HAT3_ARATH7.006e-5450.94Homeobox-leucine zipper protein HAT3 OS=Arabidopsi... [more]
ATHB4_ARATH9.469e-5151.33Homeobox-leucine zipper protein ATHB-4 OS=Arabidop... [more]
HOX11_ORYSJ9.491e-4350.24Homeobox-leucine zipper protein HOX11 OS=Oryza sat... [more]
HOX17_ORYSJ2.114e-4274.80Homeobox-leucine zipper protein HOX17 OS=Oryza sat... [more]
HOX17_ORYSI2.114e-4274.80Homeobox-leucine zipper protein HOX17 OS=Oryza sat... [more]
HAT14_ARATH8.034e-4266.67Homeobox-leucine zipper protein HAT14 OS=Arabidops... [more]
HOX11_ORYSI3.053e-4171.79Homeobox-leucine zipper protein HOX11 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004260_C09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIIF_C09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934342 ID=CK934342; Name=CK934342; organism=Citrus sinensis; type=EST; length=890bp
GGGGATTGATTAGCTATCGACTCTTCCTCTTCCTCTCTCTCTCTCTCTCT
CTCTCTCTCCGGAGGCACAGAATTTCTCTTGTTACTCGAATAAAGAGCCG
TTTGAGCAAGAACAAGAACACTTCAAATACTATACAAATACGTCAAATAA
TTTAAAGCTAGAGCTGTTTGAGCAAGAACAAGAAAACAGCCATGGCTGAG
AAAGATGATCTGGGTTTGAGTCTTAGCTTGAGCTTTCCTCAAAATCACCA
TTCTTTACAGCTAAATCTCATGCCTTCTTCTGCTTGTTCCACTTCTCCTT
CTGGTTTCAGTCTCCAAAAAACCCCTTGGAACGAGGCCTTATTCCCACCT
TCAGATCCAAACTCTGAGTCTTGTCGCGCCGAGACCCGATCATTTCTTAG
AGGAATCGACGTGAATCGATTGCCGTCACATGCAGATAACGAAGAAGAAG
TGGGCGTCTCATCTCCTAACAGCACGATTTCGAGCGTTAGCGGCAAGAGA
AGCGAGCGGGAACCTAATGGAGATGAGCTCGAAATGGAGAGAGCTTGCTC
CCGTGGTATCAGCGACGATGAAGATGGTGACACTTCAAGAAAGAAGCTGA
GACTTTCTAAAGATCAGTCAGCCATTCTTGAAGAGAGCTTCAAAGAGCAC
AACACTCTCAACCCAAAGCAAAAGTTGGCGTTGGCAAAGCAGCTTGGTCT
CAGACCTAGACAGGTGGAAGTGTGGTTCCAGAACAGAAGGGCAAGGACCA
AATTGAAGCAAACTGAGGTTGACTGCGAATTCTTGAAGAGATGCTGTGAG
AATCTGACGGAGGAGAACAGGCGGTTGCAGAAAGAAGTTCAGGAGCTGAG
AGCACTGAAGCTTTCCCCGCAGTTCTACATGCAAATGACC
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