CK934352

Overview
NameCK934352
Unique NameCK934352
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length649
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934352_ssr153 microsatellite CK934352_ssr153:153..164. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12958 contig Csv1_Contig12958:7..655. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK934352 vs. ExPASy Swiss-Prot
Match: H2B1_MEDTR (Probable histone H2B.1 OS=Medicago truncatula PE=3 SV=3)

HSP 1 Score: 170.244 bits (430), Expect = 7.975e-42
Identity = 87/88 (98.86%), Postives = 88/88 (100.00%), Query Frame = 3 
Query:  177 TVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 440
            +VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK
Sbjct:   57 SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 144
[Close]
BLAST of CK934352 vs. ExPASy Swiss-Prot
Match: H2B3_MEDTR (Probable histone H2B.3 OS=Medicago truncatula PE=3 SV=3)

HSP 1 Score: 169.859 bits (429), Expect = 1.042e-41
Identity = 86/88 (97.73%), Postives = 88/88 (100.00%), Query Frame = 3 
Query:  177 TVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 440
            +VETYKIYIFKVLKQVHPDIG+SSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK
Sbjct:   47 SVETYKIYIFKVLKQVHPDIGVSSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 134
[Close]
BLAST of CK934352 vs. ExPASy Swiss-Prot
Match: H2B_GOSHI (Histone H2B OS=Gossypium hirsutum GN=HIS2B PE=2 SV=3)

HSP 1 Score: 169.088 bits (427), Expect = 1.777e-41
Identity = 86/88 (97.73%), Postives = 88/88 (100.00%), Query Frame = 3 
Query:  177 TVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 440
            +VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK
Sbjct:   56 SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 143
[Close]
BLAST of CK934352 vs. ExPASy Swiss-Prot
Match: H2B_CAPAN (Histone H2B OS=Capsicum annuum GN=HIS2B PE=2 SV=3)

HSP 1 Score: 168.703 bits (426), Expect = 2.320e-41
Identity = 85/88 (96.59%), Postives = 88/88 (100.00%), Query Frame = 3 
Query:  177 TVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 440
            ++ETYKIYIFKVLKQVHPDIGISSK+MGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK
Sbjct:   54 SIETYKIYIFKVLKQVHPDIGISSKSMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 141
[Close]
BLAST of CK934352 vs. ExPASy Swiss-Prot
Match: H2B3_SOLLC (Histone H2B.3 (Fragment) OS=Solanum lycopersicum GN=H2B-3 PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.320e-41
Identity = 86/87 (98.85%), Postives = 87/87 (100.00%), Query Frame = 3 
Query:  180 VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 440
            VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK
Sbjct:   47 VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 133
[Close]
BLAST of CK934352 vs. ExPASy Swiss-Prot
Match: H2B1_ARATH (Histone H2B.1 OS=Arabidopsis thaliana GN=At1g07790 PE=1 SV=3)

HSP 1 Score: 168.703 bits (426), Expect = 2.320e-41
Identity = 86/87 (98.85%), Postives = 87/87 (100.00%), Query Frame = 3 
Query:  180 VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 440
            VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK
Sbjct:   58 VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 144
[Close]
BLAST of CK934352 vs. ExPASy Swiss-Prot
Match: H2B11_ARATH (Histone H2B.11 OS=Arabidopsis thaliana GN=At5g59910 PE=1 SV=5)

HSP 1 Score: 167.933 bits (424), Expect = 3.958e-41
Identity = 85/88 (96.59%), Postives = 88/88 (100.00%), Query Frame = 3 
Query:  177 TVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 440
            +VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK
Sbjct:   59 SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 146
[Close]
BLAST of CK934352 vs. ExPASy Swiss-Prot
Match: H2B9_ARATH (Histone H2B.9 OS=Arabidopsis thaliana GN=At5g02570 PE=1 SV=3)

HSP 1 Score: 167.162 bits (422), Expect = 6.751e-41
Identity = 85/88 (96.59%), Postives = 86/88 (97.73%), Query Frame = 3 
Query:  177 TVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 440
            + ETYKIYIFKVLKQVHPDIGIS KAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK
Sbjct:   41 STETYKIYIFKVLKQVHPDIGISGKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 128
[Close]
BLAST of CK934352 vs. ExPASy Swiss-Prot
Match: H2B7_ARATH (Histone H2B.7 OS=Arabidopsis thaliana GN=At3g46030 PE=1 SV=3)

HSP 1 Score: 167.162 bits (422), Expect = 6.751e-41
Identity = 85/88 (96.59%), Postives = 87/88 (98.86%), Query Frame = 3 
Query:  177 TVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 440
            +VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESS+LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK
Sbjct:   54 SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 141
[Close]
BLAST of CK934352 vs. ExPASy Swiss-Prot
Match: H2B6_ARATH (Histone H2B.6 OS=Arabidopsis thaliana GN=H2B PE=1 SV=3)

HSP 1 Score: 167.162 bits (422), Expect = 6.751e-41
Identity = 85/88 (96.59%), Postives = 87/88 (98.86%), Query Frame = 3 
Query:  177 TVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 440
            +VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESS+LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK
Sbjct:   59 SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 146
The following BLAST results are available for this feature:
BLAST of CK934352 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2B1_MEDTR7.975e-4298.86Probable histone H2B.1 OS=Medicago truncatula PE=3... [more]
H2B3_MEDTR1.042e-4197.73Probable histone H2B.3 OS=Medicago truncatula PE=3... [more]
H2B_GOSHI1.777e-4197.73Histone H2B OS=Gossypium hirsutum GN=HIS2B PE=2 SV... [more]
H2B_CAPAN2.320e-4196.59Histone H2B OS=Capsicum annuum GN=HIS2B PE=2 SV=3[more]
H2B3_SOLLC2.320e-4198.85Histone H2B.3 (Fragment) OS=Solanum lycopersicum G... [more]
H2B1_ARATH2.320e-4198.85Histone H2B.1 OS=Arabidopsis thaliana GN=At1g07790... [more]
H2B11_ARATH3.958e-4196.59Histone H2B.11 OS=Arabidopsis thaliana GN=At5g5991... [more]
H2B9_ARATH6.751e-4196.59Histone H2B.9 OS=Arabidopsis thaliana GN=At5g02570... [more]
H2B7_ARATH6.751e-4196.59Histone H2B.7 OS=Arabidopsis thaliana GN=At3g46030... [more]
H2B6_ARATH6.751e-4196.59Histone H2B.6 OS=Arabidopsis thaliana GN=H2B PE=1 ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004260_C03 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIIF_C03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934352 ID=CK934352; Name=CK934352; organism=Citrus sinensis; type=EST; length=649bp
GCGGGGGAAATCGAAATAACAAAGTAAAAANNNATCAAATGGCAGCGAAA
GCCGAGAAAAAGCCCGCCGAGAAGAAGCTGGCAGCCGAGAAGGCCCCTGC
TGCCGAGAAAAAATCGAGGGCTGAGAAGAAGCTTCCGAAAGACGGCGCCG
ACAAGAAGAAGAAGAAAGTGAAGAAGACCGTGGAGACCTACAAGATCTAC
ATATTCAAGGTGCTGAAGCAGGTGCATCCTGATATAGGAATCTCCAGCAA
GGCCATGGGTATCATGAACAGCTTTATCAACGATATCTTCGAGAAATTGG
CTCAGGAGTCGTCTCGTCTCGCGAGATACAACAAGAAGCCCACTATCACT
TCTCGTGAGATCCAGACTGCTGTTAGACTTGTCTTGCCCGGTGAGCTTGC
CAAGCATGCCGTTTCTGAAGGCACCAAGGCTGTCACTAAGTTTACTAGCT
CTTAATGAACCTATAGCTTCAATAATTCAATTAGTATCTTCTCTTTCTAG
CTTGGGCTCTGCAATTTTTGAGGTCCTGTTTCTTTTATTTTCCTTTTGGT
TGTAGATTTTCTCTTTTGTTTACTTTTTGTATCTACCCTACCCAACAACC
TAATCGAAGTTCTTTTTGCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAA
back to top