CK934363

Overview
NameCK934363
Unique NameCK934363
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length835
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934363 vs. ExPASy Swiss-Prot
Match: WDR18_BOVIN (WD repeat-containing protein 18 OS=Bos taurus GN=WDR18 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.420e-29
Identity = 82/238 (34.45%), Postives = 125/238 (52.52%), Query Frame = 3
Query:  126 MELLIASSSVADA-GIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWS-KPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSQDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIAWDPAEHVFXXG 833
            ME+ + + S A       W+L SGA  L Y+   + P GLA +   +L ++QL          I  W    K Q++ K +   P+  +  + +G Y+  G  S +IY+WEV++G LL     HY+ V+CL F+ D S  ISG +D  V  WSL +V +   S+  +    H ++ HTL ITD+  G+GG  A + +AS D+T K+W +  G LL +++F   I A+  D AEH    G
Sbjct:    5 MEVAVCTDSAAQLWSCVVWELHSGANLLTYRGGQAGPRGLALLNGEYLLAAQL------GKNYICAWELQRKDQLQQKIMCPGPVTCLTTSPNGLYVLAG-ISENIYLWEVSTGNLLVILSRHYQDVSCLQFTGDSSHFISGGKDCLVLAWSLCSVLQADPSRTPAPR--HVWSRHTLPITDLHCGFGGPLARVATASLDQTVKLWEVSSGELLLSVLFDVGILAVTMDLAEHYMFCG 233          
BLAST of CK934363 vs. ExPASy Swiss-Prot
Match: WDR18_RAT (WD repeat-containing protein 18 OS=Rattus norvegicus GN=Wdr18 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.499e-28
Identity = 78/240 (32.50%), Postives = 125/240 (52.08%), Query Frame = 3
Query:  126 MELLIASSSVADA-GIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWS---KPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSQDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIAWDPAEHVFXXG 833
            ME+++ + S A       W+L SGA  L Y+   + P GLA +   +L ++Q         G     +W    K Q++ K +   P+  +    +G Y+  G  +  IY+WEV++G LL     HY+ V+CL F+ DGS  +S  +D  V  WSL +V +   S+  +    H ++ HTL ITD+  G+GG  A + +AS D+T K+W++  G LL +++F   I ++  D AEH    G
Sbjct:    5 MEVVVCTDSAAPLWSCMVWELHSGANLLTYRGGQAGPRGLALLNGEYLLAAQ--------QGKNYICAWELQRKDQLQQKIMCPGPVTCLTTAPNGLYVLAG-IAESIYLWEVSTGNLLVILSRHYQDVSCLKFTGDGSHFVSAGKDCLVLAWSLCSVLQADPSRILAPR--HVWSQHTLPITDLHCGFGGPMARVATASLDQTMKLWAISSGDLLLSVLFDMGITSVTMDLAEHYIFCG 233          
BLAST of CK934363 vs. ExPASy Swiss-Prot
Match: WDR18_HUMAN (WD repeat-containing protein 18 OS=Homo sapiens GN=WDR18 PE=1 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 4.569e-28
Identity = 80/239 (33.47%), Postives = 126/239 (52.72%), Query Frame = 3
Query:  126 MELLIASSSVADAGIGC--WDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWS-KPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSQDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIAWDPAEHVFXXG 833
            ME+ + + S A     C  W+L SGA  L Y+   + P GLA +   +L ++QL          I  W    K Q++ K +   P+  + A+ +G Y+  G  +  I++WEV++G LL     HY+ V+CL F+ D S  ISG +D  V +WSL +V +   S+  +    H ++ H L ITD+  G+GG  A + ++S D+T K+W +  G LL +++F   I A+  D AEH    G
Sbjct:    5 MEVAVCTDSAAPMW-SCIVWELHSGANLLTYRGGQAGPRGLALLNGEYLLAAQL------GKNYISAWELQRKDQLQQKIMCPGPVTCLTASPNGLYVLAG-VAESIHLWEVSTGNLLVILSRHYQDVSCLQFTGDSSHFISGGKDCLVLVWSLCSVLQADPSRIPAP--RHVWSHHALPITDLHCGFGGPLARVATSSLDQTVKLWEVSSGELLLSVLFDVSIMAVTMDLAEHHMFCG 233          
BLAST of CK934363 vs. ExPASy Swiss-Prot
Match: WDR18_MOUSE (WD repeat-containing protein 18 OS=Mus musculus GN=Wdr18 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.868e-27
Identity = 76/240 (31.67%), Postives = 123/240 (51.25%), Query Frame = 3
Query:  126 MELLIASSSVADA-GIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWS---KPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSQDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIAWDPAEHVFXXG 833
            ME+++ + + A       W+L SGA  L Y+   + P GLA +   +L ++Q         G     +W    K Q++ K +   P+  +    +G Y+  G  +  IY+WEV +G LL     HY+ V+CL F+ DGS  +S  +D     WSL +V +   S+  +    H ++ HTL ITD+  G+GG  A + +AS D+T K+W++  G LL +++F   I ++  D AEH    G
Sbjct:    5 MEVVVCTDAAAQLWSCVVWELHSGANLLTYRGGQAGPRGLALLNGEYLLAAQ--------QGKNYICAWELQRKDQLQQKIMCPGPVTCLTTAPNGLYVLAG-IAESIYLWEVCTGNLLVILSRHYQDVSCLKFTGDGSHFVSAGKDCLALAWSLCSVLQADPSRILAPR--HVWSQHTLPITDLHCGFGGPMARVATASLDQTVKLWAISSGDLLLSVLFDMGITSVTMDLAEHHIFCG 233          
BLAST of CK934363 vs. ExPASy Swiss-Prot
Match: IPI3_DEBHA (Pre-rRNA-processing protein IPI3 OS=Debaryomyces hansenii GN=IPI3 PE=3 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.424e-21
Identity = 55/147 (37.41%), Postives = 83/147 (56.46%), Query Frame = 3
Query:  408 IAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSQDGSFLISGSEDGCVRIW---SLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGV--SATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIAWDPAEHVFXXG 833
            +AGG ++G IY+WE+ASG LL    AHY+A+T + FSQ G+FL+SGS D    +W    L++V+ + E    +     SFT H+L ITD+ I   G+     + + S D T +++ ++   LL   V PS I+ +  DPA      G
Sbjct:  121 LAGGSKTGKIYVWELASGNLLCVKEAHYQAITAIKFSQCGTFLVSGSSDARCMVWRTSDLISVYNKDEESSINIKPFASFTDHSLPITDLAISEAGIISDLRLYTVSRDSTLRIYDIMTKSLLTTFVLPSGIECVTKDPANRACYVG 267          
BLAST of CK934363 vs. ExPASy Swiss-Prot
Match: IPI3_SCHPO (Pre-rRNA-processing protein crb3/ipi3 OS=Schizosaccharomyces pombe GN=crb3 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.429e-21
Identity = 69/243 (28.40%), Postives = 120/243 (49.38%), Query Frame = 3
Query:  126 MELLIASSSVAD---AGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSQDGSFLISGSEDGCVRIWSLLTVFEE---CESQRASHLYLHSFTGHTLRITDIVIGYGG-VSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIAWDPAEHVFXXG 833
            MELL++     +   + + C +L +G     ++  +SP     C     L S+Q   +P  +       ++ K  ++   +  E +  + ++  G+++A G + G++Y+W + SG L+  + AHY+ +T L FS DG  L + S DG V  W + T+ ++    E+  +S   +  F+GH   I  + IG G  VS  + +ASED T ++W +  G LL  I  PS    +  DP+E V   G
Sbjct:    1 MELLLSGCEAIEGEPSNVLCHNLHTGTLVSTFRQ-SSPAKNATCTTLNHLLSAQ-HTRPQLN-----IHNFGKEILDQSIILPEILICVQSSPCGSWLAAGTEKGNLYIWSLKSGALIYFFRAHYQPLTILKFSNDGMVLFTASNDGDVFAWLISTLVDQNSTFETSNSSVKAISHFSGHKRSIVSMEIGPGPIVSGRLYTASEDNTIRIWDVSTGNLLTTIALPSTPSCMTVDPSERVVYVG 236          
BLAST of CK934363 vs. ExPASy Swiss-Prot
Match: IPI3_USTMA (Pre-rRNA-processing protein IPI3 OS=Ustilago maydis GN=IPI3 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.473e-18
Identity = 58/188 (30.85%), Postives = 95/188 (50.53%), Query Frame = 3
Query:  288 QPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSQDGSFLISGSEDGCVRIWS---LLTVFEECESQRASHLY----LHSFTGHTLRITDIVIGYGGV--SATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIAWDPAEHVF 824
            Q  ++  ++  +SW +  +  + +    +  IA + +G  +AGG   G I +W++A+G LL  + AHYR+VT L ++ DG+ L++GSED  + +WS   LL   ++  S   S  +      +   H L ITD+ I  G     A ++S+S D + K+W L    LL   VF   I  +  D  E  F
Sbjct:   78 QLESNKAALNIFSWQRDHLLQRIILPSKLSCIACSPNGDLVAGGSFDGRILLWQIATGDLLASFDAHYRSVTVLKWTCDGAGLLTGSEDARILVWSLAGLLAPHDQTSSSITSSEHNPAPYCTLADHNLAITDLDISSGRFPHQAMVLSSSSDASVKLWDLRTRSLLSTFVFEQPIHRVVLDCTERFF 265          
BLAST of CK934363 vs. ExPASy Swiss-Prot
Match: IPI3_PICST (Pre-rRNA-processing protein IPI3 OS=Pichia stipitis GN=IPI3 PE=3 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 4.287e-18
Identity = 53/149 (35.57%), Postives = 85/149 (57.05%), Query Frame = 3
Query:  408 IAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSQDGSFLISGSEDGCVRIW---SLLTVF--EECESQRASHLYLHSFTGHTLRITDIVIGYGGV--SATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIAWDPAEHVFXXG 833
            +AGG +SG IY+WE++SG LL    AHY+ VT + FS+ G+FL++GS+D    +W    L+ VF  +  ES R    YL + T +TL +TD+V+   GV     + + S D T +++ ++  +LL   +    I+++  DPA      G
Sbjct:  122 LAGGSKSGKIYVWELSSGSLLCVKEAHYQNVTVVKFSKCGTFLVAGSDDARCTVWKTLDLIAVFDGDNDESSRNFKPYL-AITDNTLAVTDLVLNEPGVINDLKLYTVSRDNTLRIYDIITKQLLTTFILSEAIESVVADPAGRAVYVG 269          
BLAST of CK934363 vs. ExPASy Swiss-Prot
Match: IPI3_YARLI (Pre-rRNA-processing protein IPI3 OS=Yarrowia lipolytica GN=IPI3 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.599e-18
Identity = 66/225 (29.33%), Postives = 121/225 (53.78%), Query Frame = 3
Query:  129 ELLIASSSVADAGIGCWDLESGAEQLRYKSCASPPHGLACV-----GQRFLASSQLREQPSASSGSILY-WSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSQDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSAT-IVSASEDRTCKVWSLLKGRLLRNIVFPS 782
            EL+I +++     +   DL SG     +K+  + P+    +     G   L S+Q +       G++++ ++W++  V+ + +  E +  +AA++ GT++AGG  SG +++WE+ASG+L+     HY+AVT L F+ DG  L S S+D  V  WSL+T+  + +  +       ++T H L + D+V+G G    T + + S D+T ++W +    LL  I  P+
Sbjct:    3 ELIIYTTNKGACAV---DLHSGNNITHFKNDETAPNLSVFLTNTPSGNPLLFSAQTK-------GAMMHVYNWNRESVDQQIVLPEKLSCLAASTCGTWLAGGSASGRLFVWELASGKLVFSREVHYQAVTKLAFT-DG-LLFSTSKDARVLGWSLVTMASDPKDCQP----CITWTEHNLGVVDLVVGGGPTRDTRVFTVSTDKTVRIWDVSSTALLTTITLPA 211          
BLAST of CK934363 vs. ExPASy Swiss-Prot
Match: IPI3_PICGU (Pre-rRNA-processing protein IPI3 OS=Pichia guilliermondii GN=IPI3 PE=3 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 9.550e-18
Identity = 57/191 (29.84%), Postives = 96/191 (50.26%), Query Frame = 3
Query:  294 SASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGT---------------YIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSQDGSFLISGSEDGCVRIWSL--LTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVS-ATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIAWDPA 812
            + S   I  +SW K   + +    EP+  +A   H +                +AGG  SG +Y+WE++SG L+    AHY+A+  L FS+ G++L+SG  D    +W    L   ++ E+Q+ +     +F  HTL +TDI +  G  S   + S+S+D T + + +  G+L+   V P  ++ +A DPA
Sbjct:   54 AGSKPLITVYSWGKESPDQRIPVPEPLTCMALCKHPSNEKINHKVPTFQLPWLLAGGSASGKLYIWELSSGNLVCVKEAHYQAINVLKFSECGTYLVSGGADARCSVWKTLDLVTIDDPETQKTASAL--TFMDHTLAVTDIWLTTGIRSDIRLYSSSKDGTVRNYDITSGKLITTFVLPLSVECLAVDPA 242          
The following BLAST results are available for this feature:
BLAST of CK934363 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
WDR18_BOVIN1.420e-2934.45WD repeat-containing protein 18 OS=Bos taurus GN=W... [more]
WDR18_RAT3.499e-2832.50WD repeat-containing protein 18 OS=Rattus norvegic... [more]
WDR18_HUMAN4.569e-2833.47WD repeat-containing protein 18 OS=Homo sapiens GN... [more]
WDR18_MOUSE3.868e-2731.67WD repeat-containing protein 18 OS=Mus musculus GN... [more]
IPI3_DEBHA1.424e-2137.41Pre-rRNA-processing protein IPI3 OS=Debaryomyces h... [more]
IPI3_SCHPO2.429e-2128.40Pre-rRNA-processing protein crb3/ipi3 OS=Schizosac... [more]
IPI3_USTMA1.473e-1830.85Pre-rRNA-processing protein IPI3 OS=Ustilago maydi... [more]
IPI3_PICST4.287e-1835.57Pre-rRNA-processing protein IPI3 OS=Pichia stipiti... [more]
IPI3_YARLI5.599e-1829.33Pre-rRNA-processing protein IPI3 OS=Yarrowia lipol... [more]
IPI3_PICGU9.550e-1829.84Pre-rRNA-processing protein IPI3 OS=Pichia guillie... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004259_H10 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIF_H10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934363 ID=CK934363; Name=CK934363; organism=Citrus sinensis; type=EST; length=835bp
GGGAAATTCAGCGGAGGAGTATCTTCCGTTACAAAAATATATATACGTGA
TCTTGATCAAGAACTAGCCGGCAACCGCACTTCAAATGTGAAAAAAAACA
AAACAAACTTGTCAAATCAATCAAAATGGAGTTGCTAATCGCATCATCGT
CAGTCGCCGATGCCGGTATCGGGTGCTGGGACCTAGAATCAGGTGCCGAG
CAGCTCCGATACAAATCGTGCGCCTCACCTCCGCACGGACTCGCTTGTGT
GGGCCAACGCTTCCTCGCCTCCTCGCAGCTTCGCGAACAACCTTCCGCCT
CGTCCGGTTCCATCCTTTACTGGTCCTGGTCCAAGCCTCAGGTAGAAGTG
AAGAGCTTACCAGCTGAGCCGATTAAGCCGATTGCTGCTAATAGCCACGG
CACCTATATTGCTGGTGGGGGTCAATCGGGAGATATCTACATGTGGGAGG
TTGCAAGTGGCAGATTATTAAAGAAGTGGCACGCGCATTATAGGGCCGTT
ACTTGCTTGGTTTTTTCACAAGACGGTTCATTTCTGATTTCTGGGTCTGA
GGATGGATGTGTTAGAATTTGGTCACTTCTAACGGTATTTGAGGAGTGTG
AAAGCCAGCGGGCAAGCCATCTGTATTTGCATAGTTTTACTGGGCACACT
CTGCGTATAACTGATATTGTTATTGGCTATGGAGGAGTTAGTGCAACTAT
AGTGTCAGCTTCTGAGGATCGAACTTGCAAGGTGTGGAGCCTATTGAAGG
GAAGATTGTTGAGAAATATTGTATTCCCTTCAGTAATTGATGCAATTGCA
TGGGACCCCGCTGAACATGTCTTTTANNNCGGCAG
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