CK934401

Overview
NameCK934401
Unique NameCK934401
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length832
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12618 contig Csv1_Contig12618:72..903. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1)

HSP 1 Score: 382.489 bits (981), Expect = 1.588e-105
Identity = 185/255 (72.55%), Postives = 210/255 (82.35%), Query Frame = 1
Query:   79 SHFFGTRIHGAVVKQRSGKFQARXXXXXXXXXXXXXXXPTR----DSDRLVWFPGATPPEWLDGTMVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAF 831
            S  FG RI     +  +G+ QAR                +R    D DRLVWFPGA PPEWLDG+M+GDRGFDP GLGKP EYLQYDFD LDQNLAKN  G+++G+I +S E++PTP QPYTEVFG+QRFRECELIHGRWAMLGTLGAIAVEALTG+AWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEV+V+GYIE+QRN+ELDP KR+YPGGYFDPLGLA+DP KL+ L+LAEIKH+RLAMVAFLIF +QAAF
Sbjct:   10 SGIFGIRIQDP--RPGTGRVQARFGFSFGKKKPAPPPKKSRQVQDDGDRLVWFPGANPPEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESSEIKPTPFQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALTGIAWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVLVVGYIEFQRNSELDPEKRIYPGGYFDPLGLAADPEKLDTLKLAEIKHSRLAMVAFLIFALQAAF 262          
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 332.798 bits (852), Expect = 1.443e-90
Identity = 165/251 (65.74%), Postives = 194/251 (77.29%), Query Frame = 1
Query:   79 SHFFGTRIHGAVVKQRSGKFQARXXXXXXXXXXXXXXXPTRDSDRLVWFPGATPPEWLDGTMVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVIVIGYIEYQRNAELDPVKRLYPGG-YFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAA 828
            S   GTR+   +    SG+F A                 T  +DR +W+PGA  P+WLDG++VGD GFDP GLGKP EYLQ+D DSLDQNLAKN  G+++G  T++ + + TP QPY+EVFG+QRFRECELIHGRWAML TLGA++VE LTGV WQDAGKVELV+GSSYLGQPLPFS++TLIWIEV+VIGYIE+QRNAELD  KRLYPGG +FDPLGLA+DP K   LQLAEIKHARLAMVAFL F +QAA
Sbjct:   12 SSIMGTRVAPGI-HPGSGRFTAVFGFGKKKAAPKKSAKKTVTTDRPLWYPGAISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAA 261          
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 328.561 bits (841), Expect = 2.721e-89
Identity = 161/209 (77.03%), Postives = 180/209 (86.12%), Query Frame = 1
Query:  205 SDRLVWFPGATPPEWLDGTMVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVIVIGYIEYQRNAELDPVKRLYPGG-YFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAA 828
            SDR +WFPGA  PE+LDG++VGD GFDP GLGKP EYLQ+D DSLDQNLAKN  GE++G  T++ + + TP QPY+EVFGLQRFRECELIHGRWAML TLGAI VE LTGV WQDAGKVELV+GSSYLGQPLPFS++TLIWIEV+VIGYIE+QRNAELD  KRLYPGG +FDPLGLASDP K   LQLAEIKHARLAMV FL F +QAA
Sbjct:   50 SDRPLWFPGAKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAA 258          
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB29_CHLRE (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii GN=Lhcb4 PE=1 SV=3)

HSP 1 Score: 239.58 bits (610), Expect = 1.662e-62
Identity = 121/206 (58.74%), Postives = 148/206 (71.84%), Query Frame = 1
Query:  217 VWFPGATPPEWLDGTMVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVI--TDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLAS-DPGKLENLQLAEIKHARLAMVAFLIFGIQA 825
            +W P  T PEWLDG++ GDRGFDPLGL KP+E++    D  DQN AKN+ G +  ++  T         L PY+EVFGL RFRECELIHGRWAML  LGA+  EA TGV+W +AGKVEL +G+SY G  LPFS+T LIWIEVI++G  E+ RN+E +P KR YPGG FDPL LAS D  +   L+ AEIKHARLAMV+F  +G+QA
Sbjct:   52 LWLPNTTRPEWLDGSLPGDRGFDPLGLSKPSEFVVIGVDENDQNAAKNNKGSVEAIVQATPDEVSSENRLAPYSEVFGLARFRECELIHGRWAMLACLGALVAEATTGVSWVEAGKVEL-DGASYAGLSLPFSITQLIWIEVILVGGAEFYRNSETNPEKRCYPGGVFDPLKLASEDEERAFRLKTAEIKHARLAMVSFFGYGVQA 256          
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.051e-28
Identity = 76/204 (37.25%), Postives = 105/204 (51.47%), Query Frame = 1
Query:  220 WFPGATPPEWLDGTMVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEG--SSYLGQPLPF-SLTTLIWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQ 822
            W PG   P +LDG+  GD GFD LGLG+                                               L+R++E ELIH RWAML   G I  EAL    W  A +   + G  ++YLGQP+P+ +L T++ IE + I ++E+QR+ E D  K+ YPGG FDPLG + DP K E L++ EIK+ RLA++A + F +Q
Sbjct:   49 WMPGQPRPSYLDGSAPGDFGFDSLGLGEVPA-------------------------------------------NLERYKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQ 209          
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.499e-28
Identity = 79/204 (38.73%), Postives = 102/204 (50.00%), Query Frame = 1
Query:  220 WFPGATPPEWLDGTMVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGK-VELVEG-SSYLGQPLPF-SLTTLIWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQ 822
            WFPG   P  LDG+  GD GFDPLGL    E                                             +RF+E E+ H RWAML   G +  EAL    W  A +   L +G ++YLG P+P+ +L T++ IE + I + E QR  E DP K+ YPGG FDPLG + DP K E L+L EIK+ RLAM+AF+ F +Q
Sbjct:   48 WFPGQPRPAHLDGSSPGDFGFDPLGLATVPE-------------------------------------------NFERFKESEIYHCRWAMLCVPGVLVPEALGLGNWVKAQEWAALPDGQATYLGNPVPWGNLPTILAIEFLAIAFAEQQRTMEKDPEKKKYPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQ 208          
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.003e-24
Identity = 80/228 (35.09%), Postives = 105/228 (46.05%), Query Frame = 1
Query:  241 PEWLDGTMVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVIVIGYIEYQRNAE-LDPVKRL----------------------YPGG-YFDPLGLAS---------DPGKLENLQLAEIKHARLAMVAFLIFGIQA 825
            PEWLDG++ GD GFDPLGLGK   +L++                                           +RE ELIHGRWAML  LG    +A TG+ W +AG        +  G   PFS  TL+  +++++G++E +R  +  DP  +                       YPGG +FDPL LA          D  KLE L+LAEIKHARLAM+A LIF  +A
Sbjct:   73 PEWLDGSLPGDFGFDPLGLGKDPAFLKW-------------------------------------------YREAELIHGRWAMLAVLGIFVGQAWTGIPWFEAG--------ADPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAMLAMLIFYFEA 249          
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.426e-23
Identity = 78/227 (34.36%), Postives = 107/227 (47.14%), Query Frame = 1
Query:  202 DSDRLVWFPGATPPEWLDGTMVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGV------AWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVIVIGYIEYQRNAEL--------DPV---KRL------YPGG-YFDPLGLAS-DPGKLENLQLAEIKHARLAMVAFL 807
            D DR +WFPG+TPPEWLDG++ GD GFDPLGLG   E L+++                                            + EL+H RWAMLG  G    E LT +      +W  AG+ E    +           TTL  IE+++IG+ E +R A++        DP+    +L      YPGG +FDPLG  S  P K++ L+  EIK+ RLAM+A +
Sbjct:   62 DPDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWN-------------------------------------------AQAELVHSRWAMLGAAGIFIPEFLTKIGVLNTPSWYTAGEQEYFTDT-----------TTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVM 234          
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 7.549e-23
Identity = 78/228 (34.21%), Postives = 104/228 (45.61%), Query Frame = 1
Query:  241 PEWLDGTMVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVIVIGYIEYQRNAE-LDPVKRL----------------------YPGG-YFDPLGLAS---------DPGKLENLQLAEIKHARLAMVAFLIFGIQA 825
            PEWLDG++ GD GFDPLGLGK   +L++                                           +RE ELIHGRWAM   LG    +A +G+ W +AG        +  G   PFS  TL+  ++I++G++E +R  +  DP  +                       YPGG +FDPL LA          D  KLE L++AEIKHARLAM+A LIF  +A
Sbjct:   68 PEWLDGSLPGDYGFDPLGLGKDPAFLKW-------------------------------------------YREAELIHGRWAMAAVLGIFVGQAWSGIPWFEAG--------ADPGAIAPFSFGTLLGTQLILMGWVESKRWVDFFDPDSQSVEWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKVAEIKHARLAMLAMLIFYFEA 244          
BLAST of CK934401 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.424e-21
Identity = 75/227 (33.04%), Postives = 106/227 (46.70%), Query Frame = 1
Query:  202 DSDRLVWFPGATPPEWLDGTMVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGV------AWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVIVIGYIEYQRNAEL--------DPV---KRL------YPGG-YFDPLGLAS-DPGKLENLQLAEIKHARLAMVAFL 807
            D DR +WFPG+TPP WLDG++ GD GFDPLGL    E L+++                                           ++ EL+H RWAMLG  G    E LT +      +W  AG+ E    +           TTL  +E+++IG+ E +R A++        DP+    +L      YPGG +FDPLG  S  P K++ L+  EIK+ RLAM+A +
Sbjct:   62 DPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWN-------------------------------------------QQAELVHCRWAMLGAAGIFIPELLTKIGILNTPSWYTAGEQEYFTDT-----------TTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVM 234          
The following BLAST results are available for this feature:
BLAST of CK934401 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
CB4C_ARATH1.588e-10572.55Chlorophyll a-b binding protein CP29.3, chloroplas... [more]
CB4A_ARATH1.443e-9065.74Chlorophyll a-b binding protein CP29.1, chloroplas... [more]
CB4B_ARATH2.721e-8977.03Chlorophyll a-b binding protein CP29.2, chloroplas... [more]
CB29_CHLRE1.662e-6258.74Chlorophyll a-b binding protein CP29 OS=Chlamydomo... [more]
CB11_SOLLC2.051e-2837.25Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB121_HORVU3.499e-2838.73Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB4_SPIOL4.003e-2435.09Chlorophyll a-b binding protein CP24, chloroplasti... [more]
CB12_PETHY4.426e-2334.36Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB4A_SOLLC7.549e-2334.21Chlorophyll a-b binding protein CP24 10A, chloropl... [more]
CB12_SOLLC1.424e-2133.04Chlorophyll a-b binding protein 7, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004259_E12 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIF_E12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934401 ID=CK934401; Name=CK934401; organism=Citrus sinensis; type=EST; length=832bp
GCGGGAGTACACTGGAAGTCACATATTCTATCCNNNATCNNNTTATCAGC
GATGGCCACCACCACTACAGCAGCAGCATCACATTTCTTCGGGACGAGAA
TTCATGGGGCTGTCGTGAAACAAAGATCGGGAAAATTCCAAGCCAGGTTC
AGCTTTCGCAAGAAAAAATCCCCACCAGCCAAAAAGGCCAGGCCTACACG
AGACTCCGACCGGCTTGTCTGGTTCCCCGGCGCCACCCCGCCGGAATGGC
TCGACGGGACAATGGTGGGTGACCGTGGGTTCGACCCGTTGGGGCTGGGG
AAGCCAACAGAGTACTTGCAGTATGATTTTGACTCGTTGGATCAGAACTT
GGCCAAGAACGATGTCGGCGAGCTTCTCGGAGTGATTACTGATTCCGGGG
AGCTGCAGCCGACGCCGCTGCAGCCGTACACGGAGGTATTTGGGCTGCAG
AGGTTTAGAGAATGTGAGCTGATTCATGGAAGGTGGGCCATGTTGGGTAC
CCTTGGCGCCATTGCTGTTGAAGCTCTCACTGGTGTCGCATGGCAGGATG
CTGGAAAGGTGGAGCTGGTGGAGGGTTCATCTTATCTTGGCCAACCACTT
CCATTTTCATTAACAACATTGATTTGGATTGAAGTTATTGTGATTGGGTA
CATAGAATATCAAAGAAATGCAGAGCTTGATCCAGTGAAAAGACTATACC
CTGGTGGGTATTTTGATCCTCTTGGCTTGGCCTCAGATCCTGGGAAGCTT
GAAAATCTTCAATTGGCTGAAATCAAGCACGCTCGTCTAGCAATGGTAGC
ATTTTTAATCTTTGGAATCCAGGCTGCTTTTA
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