CK934406

Overview
NameCK934406
Unique NameCK934406
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length798
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10949 contig Csv1_Contig10949:277..1074. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934406 vs. ExPASy Swiss-Prot
Match: SEH1_XENTR (Nucleoporin seh1 OS=Xenopus tropicalis GN=seh1l PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.664e-24
Identity = 72/258 (27.91%), Postives = 116/258 (44.96%), Query Frame = 2
Query:    5 FGDAVACICSDGSLLLWEEIVEDAQPL-----QWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLHAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSS-KVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWTLNIGRPYEVIAVATQKGIAIWHVGANPELDG-----RLSVEKVALLSGHGGEVWQMEWDMSGTTLATTGSDGMVRLWQSNLNGVW 745
            FG  +A    D +  +WEEIV ++         W    +   + T V DV+F      L L    +DG V++YE  D + L  W L  E            K SC  + ISWNP           +G +  +P +    +++E++E   ++     L      SD V+ +A+  N+GR + ++AVAT+            EL       +  +  VA    H  +VW++ W+++GT LA++G DG VRLW++N    W
Sbjct:   70 FGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGVVRIYEAPDVMNLSQWSLQHEISC---------KLSC--SCISWNPSSSRAHSPMIAVGSDDSSPNIMGKVQIYEYNENTRKYAKAETLM---SVSDPVHDIAFAPNLGRSFHILAVATKDVRIFTMKPLRKELSSSGGVTKFEIHTVAQFDNHNSQVWRVSWNITGTVLASSGDDGTVRLWKANYMDNW 313          
BLAST of CK934406 vs. ExPASy Swiss-Prot
Match: SEH1A_XENLA (Nucleoporin seh1-A OS=Xenopus laevis GN=seh1l-A PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.664e-24
Identity = 72/258 (27.91%), Postives = 116/258 (44.96%), Query Frame = 2
Query:    5 FGDAVACICSDGSLLLWEEIVEDAQPL-----QWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLHAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSS-KVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWTLNIGRPYEVIAVATQKGIAIWHVGANPELDG-----RLSVEKVALLSGHGGEVWQMEWDMSGTTLATTGSDGMVRLWQSNLNGVW 745
            FG  +A    D +  +WEEIV ++         W    +   + T V DV+F      L L    +DG V++YE  D + L  W L  E            K SC  + ISWNP           +G +  +P +    +++E++E   ++     L      SD V+ +A+  N+GR + ++AVAT+            EL       +  +  VA    H  +VW++ W+++GT LA++G DG VRLW++N    W
Sbjct:   70 FGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGVVRIYEAPDVMNLSQWSLQHEISC---------KLSC--SCISWNPSSSRAHSPMIAVGSDDSSPNIMGKVQIYEYNENTRKYAKAETLM---SVSDPVHDIAFAPNLGRSFHILAVATKDVRIFTMKPLRKELSSSGGVTKFEIHTVAQFDNHNSQVWRVSWNITGTVLASSGDDGTVRLWKANYMDNW 313          
BLAST of CK934406 vs. ExPASy Swiss-Prot
Match: SEH1B_XENLA (Nucleoporin seh1-B OS=Xenopus laevis GN=seh1l-B PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.173e-24
Identity = 74/258 (28.68%), Postives = 116/258 (44.96%), Query Frame = 2
Query:    5 FGDAVACICSDGSLLLWEEIVEDAQPL-----QWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLHAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSS-KVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWTLNIGRPYEVIAVATQKGIAIWHVGANPELDGRLSVEK-----VALLSGHGGEVWQMEWDMSGTTLATTGSDGMVRLWQSNLNGVW 745
            FG  +A    D +  +WEEIV ++         W    +   + T V DV+F      L L    +DG V++YE  D + L  W L  E            K SC  + ISWNP           +G +  +P +    +++E++E   ++     L      SD V+ +A+  N+GR + ++AVAT+            EL     V K     VA    H  +VW++ W+++GT LA++G DG VRLW++N    W
Sbjct:   70 FGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGVVRIYEAPDVMNLSQWSLQHEISC---------KLSC--SCISWNPSSSRAHSPMIAVGSDDSSPNIMGKVQIYEYNENTRKYAKAETLM---SVSDPVHDIAFAPNLGRSFHILAVATKDVRIFTMKPLRKELSSSGGVTKFENHTVAQFDNHNSQVWRVSWNITGTVLASSGDDGTVRLWKANYMDNW 313          
BLAST of CK934406 vs. ExPASy Swiss-Prot
Match: SEH1_OSMMO (Nucleoporin seh1 OS=Osmerus mordax GN=seh1l PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.322e-24
Identity = 75/258 (29.07%), Postives = 122/258 (47.29%), Query Frame = 2
Query:    5 FGDAVACICSDGSLLLWEEIVEDAQPLQ-----WKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLHAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFN-SDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWTLNIGRPYEVIAVATQKGIAIWHV-----GANPELDGRLSVEKVALLSGHGGEVWQMEWDMSGTTLATTGSDGMVRLWQSNLNGVW 745
            FG  +A    D +  +WEEIV ++   Q     W    +   + T V DV+F      L L    +DG V++YE  D + L  W L  E            K SC  + ISWNP           +G + S+T      +++E+ E   ++  V  L      +D V+ +A+  N+GR + V+A+AT K + I+ +      ++     +L V+  A   GH  +VW++ W+++ T LA++G DG VRLW++N    W
Sbjct:   70 FGQVLASCSFDRTAAVWEEIVGESNDKQRGLSHWIKRTTLVDSRTSVTDVKFAPKHMGLMLTTCSADGVVRIYEAPDVMNLSQWSLQHEISC---------KLSC--SCISWNPSSSRAHSPMIAVGSDDSNTAYSGKVQIYEYVENTRKYAKVETLMTV---TDPVHDIAFAPNLGRSFHVLAIAT-KDVRIFKLIPMRKESSSSGPTKLEVQLQAQFDGHNSQVWRVSWNITSTLLASSGDDGCVRLWKANYMDNW 312          
BLAST of CK934406 vs. ExPASy Swiss-Prot
Match: SEH1_HUMAN (Nucleoporin SEH1 OS=Homo sapiens GN=SEH1L PE=1 SV=3)

HSP 1 Score: 109.383 bits (272), Expect = 2.402e-23
Identity = 70/258 (27.13%), Postives = 116/258 (44.96%), Query Frame = 2
Query:    5 FGDAVACICSDGSLLLWEEIVEDAQPL-----QWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLHAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSS-KVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWTLNIGRPYEVIAVATQKGIAIWHVGANPELDG-----RLSVEKVALLSGHGGEVWQMEWDMSGTTLATTGSDGMVRLWQSNLNGVW 745
            FG  +A    D +  +WEEIV ++         W    +   + T V DV+F      L L    +DG V++YE  D + L  W L  E            K SC  + ISWNP           +G +  +P   +  +++E++E   ++     L      +D V+ +A+  N+GR + ++A+AT+            EL       +  +  VA    H  +VW++ W+++GT LA++G DG VRLW++N    W
Sbjct:   70 FGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGIVRIYEAPDVMNLSQWSLQHEISC---------KLSC--SCISWNPSSSRAHSPMIAVGSDDSSPNAMAKVQIFEYNENTRKYAKAETLMTV---TDPVHDIAFAPNLGRSFHILAIATKDVRIFTLKPVRKELTSSGGPTKFEIHIVAQFDNHNSQVWRVSWNITGTVLASSGDDGCVRLWKANYMDNW 313          
BLAST of CK934406 vs. ExPASy Swiss-Prot
Match: SEH1_BOVIN (Nucleoporin SEH1 OS=Bos taurus GN=SEH1L PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.402e-23
Identity = 70/258 (27.13%), Postives = 116/258 (44.96%), Query Frame = 2
Query:    5 FGDAVACICSDGSLLLWEEIVEDAQPL-----QWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLHAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSS-KVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWTLNIGRPYEVIAVATQKGIAIWHVGANPELDG-----RLSVEKVALLSGHGGEVWQMEWDMSGTTLATTGSDGMVRLWQSNLNGVW 745
            FG  +A    D +  +WEEIV ++         W    +   + T V DV+F      L L    +DG V++YE  D + L  W L  E            K SC  + ISWNP           +G +  +P   +  +++E++E   ++     L      +D V+ +A+  N+GR + ++A+AT+            EL       +  +  VA    H  +VW++ W+++GT LA++G DG VRLW++N    W
Sbjct:   70 FGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGIVRIYEAPDVMNLSQWSLQHEISC---------KLSC--SCISWNPSSSRAHAPMIAVGSDDSSPNAMAKVQIFEYNENTRKYAKAETLLTV---TDPVHDIAFAPNLGRSFHILAIATKDVRIFTLKPVRKELTSSGGPTKFEIHIVAQFDNHNSQVWRVSWNITGTVLASSGDDGCVRLWKANYMDNW 313          
BLAST of CK934406 vs. ExPASy Swiss-Prot
Match: SEH1_PONAB (Nucleoporin SEH1 OS=Pongo abelii GN=SEH1L PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.138e-23
Identity = 70/258 (27.13%), Postives = 116/258 (44.96%), Query Frame = 2
Query:    5 FGDAVACICSDGSLLLWEEIVEDAQPL-----QWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLHAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSS-KVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWTLNIGRPYEVIAVATQKGIAIWHVGANPELDG-----RLSVEKVALLSGHGGEVWQMEWDMSGTTLATTGSDGMVRLWQSNLNGVW 745
            FG  +A    D +  +WEEIV ++         W    +   + T V DV+F      L L    +DG V++YE  D + L  W L  E            K SC  + ISWNP           +G +  +P   +  +++E++E   ++     L      +D V+ +A+  N+GR + ++A+AT+            EL       +  +  VA    H  +VW++ W+++GT LA++G DG VRLW++N    W
Sbjct:   70 FGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGIVRIYEAPDVMNLSQWSLQHEISC---------KLSC--SCISWNPSSSRAHSPMIAVGSDDSSPNAMAKVQIFEYNENTRKYAKAETLMTV---TDPVHDIAFAPNLGRSFHILAIATKDVRIFTLKPVRKELTSSGGPTKFEIHIVAHFDNHNSQVWRVSWNITGTVLASSGDDGCVRLWKANYMDNW 313          
BLAST of CK934406 vs. ExPASy Swiss-Prot
Match: SEH1_MOUSE (Nucleoporin SEH1 OS=Mus musculus GN=Seh1l PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.192e-22
Identity = 71/258 (27.52%), Postives = 115/258 (44.57%), Query Frame = 2
Query:    5 FGDAVACICSDGSLLLWEEIVEDAQPL-----QWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLHAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQ-LNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWTLNIGRPYEVIAVATQKGIAIWHVGANPELDG-----RLSVEKVALLSGHGGEVWQMEWDMSGTTLATTGSDGMVRLWQSNLNGVW 745
            FG  +A    D +  +WEEIV ++         W    +   + T V DV+F      L L    +DG V+VYE  D + L  W L  E    +          C S  ISWNP           +G +  +P  +   +++E++E   ++     L      +D V+ +A+  N+GR + ++AVAT+            EL       +  +  VA    H  +VW++ W+++GT LA++G DG VRLW++N    W
Sbjct:   70 FGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGIVRVYEAPDVMNLSQWSLQHEVSCKL----------CCSC-ISWNPSSSRAHPPMIAVGSDDSSPNSMAKVQIFEYNENTRKYAKAETLMTV---TDPVHDIAFAPNLGRSFHILAVATKDVRIFTLKPLRKELTSSGGPTKFEIHIVAQFDNHNSQVWRVSWNITGTVLASSGDDGCVRLWKANYMDNW 313          
BLAST of CK934406 vs. ExPASy Swiss-Prot
Match: SEH1_DANRE (Nucleoporin seh1 OS=Danio rerio GN=seh1l PE=2 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.557e-22
Identity = 74/259 (28.57%), Postives = 118/259 (45.56%), Query Frame = 2
Query:    5 FGDAVACICSDGSLLLWEEIVEDAQPLQ-----WKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLHAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVW--EFDEAHNRWLPVAELALPEDRSDEVYAVAWTLNIGRPYEVIAVATQ-----KGIAIWHVGANPELDGRLSVEKVALLSGHGGEVWQMEWDMSGTTLATTGSDGMVRLWQSNLNGVW 745
            FG  +A    D +  +WEEIV ++   Q     W    +   + T V DV+F      L L    +DG V++YE  D + L  W L  E            K +C  + ISWNP           +G   D+    S KV   E++E   ++     L      +D V+ +A+  N+GR + V+A+AT+     K + +    AN     +  V+ +A    H  +VW++ W+++ T LA++G DG VRLW++N    W
Sbjct:   70 FGQVLASCSFDRTAAVWEEIVGESNDKQRGQSHWIKRTTLVDSRTSVTDVKFAPKHMGLMLTTCSADGVVRIYEAPDVMNLSQWSLQHEISC---------KLAC--SCISWNPSSSRAHPPMIAVG-GDDSNGAYSGKVQIHEYNENTRKYAKAETLMTV---TDPVHDIAFAPNLGRSFHVLAIATKDVRIFKLLPLRRESANSSGPTKFEVQVMAQFDSHNSQVWRVSWNITSTLLASSGDDGCVRLWKANYMDNW 313          
BLAST of CK934406 vs. ExPASy Swiss-Prot
Match: SEC13_CANAL (Protein transport protein SEC13 OS=Candida albicans GN=SEC13 PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 4.541e-14
Identity = 71/257 (27.63%), Postives = 111/257 (43.19%), Query Frame = 2
Query:    5 FGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLHAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSF------VLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWT-LNIGRPYEVIAVATQ-KGIAIWHVGANPELDGRLSVEKVALLSGHGGEV-WQMEWDMSGTTLATTGSDGMVRLWQSNLNGVWD 748
            FG  +A    DG  L+W+E  E  Q   W +          V  V +        L+   SDG V V +  D              +   S  +F   +  + S +W P    ++ S+       ++   SD    N +K+W++D A+N ++  A+L   E  +D V  VAW+  N+ R Y  IA A+Q + + IW      + DG+   +K  L      +V W+  W +SG  LA +G D  V LW+ NL G W+
Sbjct:   67 FGSILASCSYDGKALIWKEQPETQQ---WSIIAEHTVHQASVNSVSWAPHELGAVLLCTSSDGKVSVVDFND--------------DGTTSHVIFDAHAIGANSATWAPVSTSSKDSAALKQQRRIVSCGSD----NLAKIWKYDAANNTYVEEAKL---EGHTDWVRDVAWSPSNLIRSY--IATASQDRTVLIW----TQDRDGKW--QKQLLTEEKFPDVCWRCSWSLSGNILAVSGGDNKVSLWKENLQGKWE 291          
The following BLAST results are available for this feature:
BLAST of CK934406 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
SEH1_XENTR1.664e-2427.91Nucleoporin seh1 OS=Xenopus tropicalis GN=seh1l PE... [more]
SEH1A_XENLA1.664e-2427.91Nucleoporin seh1-A OS=Xenopus laevis GN=seh1l-A PE... [more]
SEH1B_XENLA2.173e-2428.68Nucleoporin seh1-B OS=Xenopus laevis GN=seh1l-B PE... [more]
SEH1_OSMMO6.322e-2429.07Nucleoporin seh1 OS=Osmerus mordax GN=seh1l PE=2 S... [more]
SEH1_HUMAN2.402e-2327.13Nucleoporin SEH1 OS=Homo sapiens GN=SEH1L PE=1 SV=... [more]
SEH1_BOVIN2.402e-2327.13Nucleoporin SEH1 OS=Bos taurus GN=SEH1L PE=2 SV=1[more]
SEH1_PONAB3.138e-2327.13Nucleoporin SEH1 OS=Pongo abelii GN=SEH1L PE=2 SV=... [more]
SEH1_MOUSE1.192e-2227.52Nucleoporin SEH1 OS=Mus musculus GN=Seh1l PE=2 SV=... [more]
SEH1_DANRE1.557e-2228.57Nucleoporin seh1 OS=Danio rerio GN=seh1l PE=2 SV=2[more]
SEC13_CANAL4.541e-1427.63Protein transport protein SEC13 OS=Candida albican... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004259_D10 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIF_D10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934406 ID=CK934406; Name=CK934406; organism=Citrus sinensis; type=EST; length=798bp
GGGGTTCGGTGACGCGGTTGCCTGTATTTGCTCGGATGGAAGTTTGTTGT
TGTGGGAAGAGATTGTTGAAGATGCACAGCCTCTGCAGTGGAAGCTCTGT
AAGAGCTTTGAAAGCACTTCGACTCAAGTGTTAGATGTTCAATTTGGAGT
CTCTTCCACAAGTTTGAAATTGGTTGCTGCATACTCAGATGGCCATGTTA
AAGTTTATGAGCTCCTAGATCCCTTGATACTGAAAAATTGGCAACTTCAT
GCTGAATTTCAGAATGCTATTGATTCTGTGACTATGTTTAGGAAGGCTTC
ATGCATATCGGCATCCATTTCTTGGAATCCACAGAAGGGTGAAAACCAGG
GATCTAGTTTTGTTCTCGGGTTCAATTCAGACACACCACAACTCAATTCC
TCCAAGGTATGGGAGTTTGATGAGGCTCATAATAGATGGCTACCAGTGGC
AGAGTTGGCTTTGCCTGAGGACAGGAGTGATGAGGTTTATGCTGTAGCAT
GGACACTAAACATCGGCCGGCCATATGAGGTGATAGCTGTTGCAACTCAG
AAGGGCATTGCCATTTGGCATGTTGGAGCAAACCCCGAGTTGGATGGAAG
GCTCTCAGTAGAGAAGGTTGCATTGCTCTCTGGCCATGGAGGCGAGGTGT
GGCAGATGGAATGGGACATGAGTGGGACGACCTTGGCAACAACAGGAAGT
GATGGGATGGTAAGGTTATGGCAATCTAACTTGAATGGCGTTTGGGATGA
ACAGGCTGCATTTCAACCCACTGCTTAGTGCCAACCAGCATCATTTCC
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