CK934409

Overview
NameCK934409
Unique NameCK934409
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length598
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1681 contig Csv1_Contig1681:1..598. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934409 vs. ExPASy Swiss-Prot
Match: UMP1_ARATH (Uncharacterized protein At3g15000, mitochondrial OS=Arabidopsis thaliana GN=At3g15000 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.005e-17
Identity = 46/87 (52.87%), Postives = 62/87 (71.26%), Query Frame = 1
Query:  328 SGNSAYSPLNSGS-NFSDRPPTEMAPLFPGCDYEHWLIVMDKPGGEGATKQQMIDCYIKTLAQVVGSEEEAKKKIYNVSCERYFGFG 585
            S  +  S LN  + N+S+RPP E   L  GCD+EHWL+V++ P GE  T+ ++ID YIKTLAQ+VGSE+EA+ KIY+VS   Y+ FG
Sbjct:   66 STQATSSSLNDPNPNWSNRPPKETI-LLDGCDFEHWLVVVEPPQGE-PTRDEIIDSYIKTLAQIVGSEDEARMKIYSVSTRCYYAFG 150          
BLAST of CK934409 vs. ExPASy Swiss-Prot
Match: DAG_ANTMA (DAG protein, chloroplastic OS=Antirrhinum majus GN=DAG PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.312e-15
Identity = 44/103 (42.72%), Postives = 55/103 (53.40%), Query Frame = 1
Query:  280 PLPSTRFCQIRCRANRSGNSAYSPLNSGSNFSDRPPTEMAPLFPGCDYEHWLIVMDKPGGEGATKQQMIDCYIKTLAQVVGSEEEAKKKIYNVSCERYFGFGC 588
            P+ S        RA   G  +    N+ +N  +   T M    PGCDY HWLIVM+ P     T++QMID Y+ TLA V+GS EEAKK +Y  S   Y GF C
Sbjct:   42 PIKSRSAAYPTVRALTDGEYSSRRNNNNNNSGEERETIM---LPGCDYNHWLIVMEFPKDPAPTREQMIDTYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQC 141          
The following BLAST results are available for this feature:
BLAST of CK934409 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
UMP1_ARATH2.005e-1752.87Uncharacterized protein At3g15000, mitochondrial O... [more]
DAG_ANTMA9.312e-1542.72DAG protein, chloroplastic OS=Antirrhinum majus GN... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004259_E01 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIF_E01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934409 ID=CK934409; Name=CK934409; organism=Citrus sinensis; type=EST; length=598bp
GGGGGCTATCTTCATTTCTTATTTCAAAACCCTCGTTTCTTTCTTCTATC
ATCTTCTTCTTCGATCTCCCATAAATCCTCGTCAGAAAAAACAATGGCTC
AAACCCTAACACGGGCCATTACGGCTCTCTCCATCCGCAGCTCAAGACTG
TCCCTCTTCAGCTCAAAGCGCCTGCTTTTCACAAACACCACTACCGTCAC
CGCCCCATCTCCGCTCCCCTTTCTGCTCTTCAGCCGTCGGGCCGCAGCCC
CGCTCTCCCATGCGGTGGGGTTGATTTCCCCCCTACCATCCACTCGCTTC
TGCCAAATACGGTGCCGTGCCAACCGCTCTGGAAACTCAGCCTACTCCCC
GCTCAACTCCGGGTCCAACTTCAGCGACCGCCCTCCCACCGAGATGGCCC
CGCTATTCCCCGGCTGTGACTACGAGCACTGGCTTATCGTCATGGACAAG
CCCGGCGGCGAGGGCGCCACTAAACAGCAGATGATTGATTGTTATATCAA
AACCCTTGCTCAGGTGGTCGGCAGTGAGGAAGAGGCAAAGAAGAAAATTT
ACAATGTTTCGTGTGAGAGGTATTTTGGATTCGGCTGTGAGCTTGATG
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