CK934412

Overview
NameCK934412
Unique NameCK934412
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length692
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1549 contig Csv1_Contig1549:260..951. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934412 vs. ExPASy Swiss-Prot
Match: MSBP2_ARATH (Membrane steroid-binding protein 2 OS=Arabidopsis thaliana GN=MSBP2 PE=1 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 2.889e-56
Identity = 112/139 (80.58%), Postives = 119/139 (85.61%), Query Frame = 1
Query:    7 HQQRSREYEEQMEPLPPPVQLGEITEEELKQYDGSDSKKPLLMAIKSQIYDVSHSRMFYGPGGPYALFAGKDASRALAKMSFEEKDLTGDISGLGPFELEALQDWEYKFMSKYVKVGSIKSTVPVTDGASSGESTEPKE 423
            H+ RS E + Q EPLPPPVQLGEITEEELK YDGSDSKKPLLMAIK QIYDVS SRMFYGPGGPYALFAGKDASRALAKMSFE++DLTGDISGLG FELEALQDWEYKFMSKYVKVG+I+      DG    ES+EP E
Sbjct:   48 HRPRSLEVQPQSEPLPPPVQLGEITEEELKLYDGSDSKKPLLMAIKGQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEDQDLTGDISGLGAFELEALQDWEYKFMSKYVKVGTIQK----KDGEGK-ESSEPSE 181          
BLAST of CK934412 vs. ExPASy Swiss-Prot
Match: MSBP1_ARATH (Membrane steroid-binding protein 1 OS=Arabidopsis thaliana GN=MSBP1 PE=1 SV=2)

HSP 1 Score: 209.534 bits (532), Expect = 1.342e-53
Identity = 113/165 (68.48%), Postives = 125/165 (75.76%), Query Frame = 1
Query:    7 HQQRSREYEEQMEPLPPPVQLGEITEEELKQYDGSDSKKPLLMAIKSQIYDVSHSRMFYGPGGPYALFAGKDASRALAKMSFEEKDLTGDISGLGPFELEALQDWEYKFMSKYVKVGSIKSTVPVTDGASSGESTEPKE---GVVDTPAESKGVV----DTPAET 480
            HQ+     +E+  P+P PVQ+GEITEEELKQYDGSD +KPLLMAIK QIYDV+ SRMFYGPGGPYALFAGKDASRALAKMSFEEKDLT D+SGLGPFEL+ALQDWEYKFMSKY KVG++K      + AS  E TE  E    V  TP   K VV    D PAET
Sbjct:   52 HQRARSLAQEEEPPIPQPVQVGEITEEELKQYDGSDPQKPLLMAIKHQIYDVTQSRMFYGPGGPYALFAGKDASRALAKMSFEEKDLTWDVSGLGPFELDALQDWEYKFMSKYAKVGTVKVAGSEPETASVSEPTENVEQDAHVTTTP--GKTVVDKSDDAPAET 214          
BLAST of CK934412 vs. ExPASy Swiss-Prot
Match: SBP3_ARATH (Probable steroid-binding protein 3 OS=Arabidopsis thaliana GN=MP3 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.210e-23
Identity = 50/99 (50.51%), Postives = 69/99 (69.70%), Query Frame = 1
Query:   73 EITEEELKQYDGSDSKKPLLMAIKSQIYDVSHSRMFYGPGGPYALFAGKDASRALAKMSFEEKDLTGDISGLGPFELEALQDWEYKFMSKYVKVGSIKS 369
            E T E+L QY+G+D  KP+ +AIK +++DV+  + FYG GG Y++FAGKDASRAL KMS  E+D++  + GL   E+  L DWE KF +KY  VG + S
Sbjct:    2 EFTAEQLSQYNGTDESKPIYVAIKGRVFDVTTGKSFYGSGGDYSMFAGKDASRALGKMSKNEEDVSPSLEGLTEKEINTLNDWETKFEAKYPVVGRVVS 100          
BLAST of CK934412 vs. ExPASy Swiss-Prot
Match: NENF_RAT (Neudesin OS=Rattus norvegicus GN=Nenf PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.824e-19
Identity = 52/114 (45.61%), Postives = 71/114 (62.28%), Query Frame = 1
Query:   55 PPVQLGEITEEELKQYDGSDSKKPLLMAIKSQIYDVSHSRMFYGPGGPYALFAGKDASRALAKMSFEEKDLTGDISGLGPFELEALQD-WEYKFMSKYVKVGSIKSTVPVTDGA 393
            PPV+L   TEEEL +Y G +  +P+ +A+K  ++DV+  + FYG G PY   AGKD+SR +AKMS +  DLT DISGL   ELEAL D +   + +KY  VG     +   DG+
Sbjct:   41 PPVRL--FTEEELARYSGEEEDQPIYLAVKGVVFDVTSGKEFYGRGAPYNALAGKDSSRGVAKMSLDPADLTHDISGLTAKELEALDDIFSKVYKAKYPIVGYTARRILNEDGS 152          
BLAST of CK934412 vs. ExPASy Swiss-Prot
Match: NENF_MOUSE (Neudesin OS=Mus musculus GN=Nenf PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.122e-18
Identity = 50/114 (43.86%), Postives = 70/114 (61.40%), Query Frame = 1
Query:   55 PPVQLGEITEEELKQYDGSDSKKPLLMAIKSQIYDVSHSRMFYGPGGPYALFAGKDASRALAKMSFEEKDLTGDISGLGPFELEALQD-WEYKFMSKYVKVGSIKSTVPVTDGA 393
            PPV+L   TEEEL +Y G +  +P+ +A+K  ++DV+  + FYG G PY   AGKD+SR +AKMS +  DLT D +GL   ELEAL D +   + +KY  VG     +   DG+
Sbjct:   41 PPVRL--FTEEELARYGGEEEDQPIYLAVKGVVFDVTSGKEFYGRGAPYNALAGKDSSRGVAKMSLDPADLTHDTTGLTAKELEALDDVFSKVYKAKYPIVGYTARRILNEDGS 152          
BLAST of CK934412 vs. ExPASy Swiss-Prot
Match: PGRC1_RAT (Membrane-associated progesterone receptor component 1 OS=Rattus norvegicus GN=Pgrmc1 PE=1 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 2.024e-17
Identity = 48/124 (38.71%), Postives = 71/124 (57.26%), Query Frame = 1
Query:    1 GHHQQRSREYEEQMEPLPPPVQLGEITEEELKQYDGSDSKKPLLMAIKSQIYDVSHSRMFYGPGGPYALFAGKDASRALAKMSFEE---KDLTGDISGLGPFELEALQDWEYKFMSKYVKVGSI 363
            G     S + ++   P  P ++  + T  EL++YDG    + +LMAI  +++DV+  R FYGP GPY +FAG+DASR LA    ++   KD   D+S L P + E L DW+ +F  KY  VG +
Sbjct:   48 GDQPGASGDNDDDEPPPLPRLKPRDFTPAELRRYDGVQDPR-ILMAINGKVFDVTKGRKFYGPEGPYGVFAGRDASRGLATFCLDKEALKDEYDDLSDLTPAQQETLNDWDSQFTFKYHHVGKL 170          
BLAST of CK934412 vs. ExPASy Swiss-Prot
Match: NENF_BOVIN (Neudesin OS=Bos taurus GN=NENF PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.643e-17
Identity = 48/114 (42.11%), Postives = 69/114 (60.53%), Query Frame = 1
Query:   55 PPVQLGEITEEELKQYDGSDSKKPLLMAIKSQIYDVSHSRMFYGPGGPYALFAGKDASRALAKMSFEEKDLTGDISGLGPFELEALQD-WEYKFMSKYVKVGSIKSTVPVTDGA 393
            PPV+L   TEEEL +Y G +  +P+ MA+K  ++DV+  + FYG G PY    GKD++R +AKMS +  DLT D +GL   ELE+L D +   + +KY  VG     +   DG+
Sbjct:   39 PPVRL--FTEEELARYGGEEEDQPIYMAVKGVVFDVTSGKEFYGRGAPYNALTGKDSTRGVAKMSLDPADLTHDTTGLTAEELESLDDVFTRVYKAKYPIVGYTARRILNEDGS 150          
BLAST of CK934412 vs. ExPASy Swiss-Prot
Match: PGRC1_PIG (Membrane-associated progesterone receptor component 1 OS=Sus scrofa GN=PGRMC1 PE=1 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 4.508e-17
Identity = 46/121 (38.02%), Postives = 71/121 (58.68%), Query Frame = 1
Query:   10 QQRSREYEEQMEPLPPPVQLGEITEEELKQYDGSDSKKPLLMAIKSQIYDVSHSRMFYGPGGPYALFAGKDASRALAKMSFEE---KDLTGDISGLGPFELEALQDWEYKFMSKYVKVGSI 363
            Q  + + ++   P  P ++  + T  EL+++DG    + +LMAI  +++DV+  R FYGP GPY +FAG+DASR LA    ++   KD   D+S L P + E L DW+ +F  KY  VG +
Sbjct:   50 QPAASDSDDDEPPPLPRLKRRDFTPAELRRFDGVQDPR-ILMAINGKVFDVTKGRKFYGPEGPYGVFAGRDASRGLATFCLDKEALKDEYDDLSDLTPAQQETLNDWDSQFTFKYHHVGKL 169          
BLAST of CK934412 vs. ExPASy Swiss-Prot
Match: PGRC1_MOUSE (Membrane-associated progesterone receptor component 1 OS=Mus musculus GN=Pgrmc1 PE=1 SV=4)

HSP 1 Score: 88.1965 bits (217), Expect = 4.508e-17
Identity = 47/124 (37.90%), Postives = 71/124 (57.26%), Query Frame = 1
Query:    1 GHHQQRSREYEEQMEPLPPPVQLGEITEEELKQYDGSDSKKPLLMAIKSQIYDVSHSRMFYGPGGPYALFAGKDASRALAKMSFEE---KDLTGDISGLGPFELEALQDWEYKFMSKYVKVGSI 363
            G     S + ++   P  P ++  + T  EL+++DG    + +LMAI  +++DV+  R FYGP GPY +FAG+DASR LA    ++   KD   D+S L P + E L DW+ +F  KY  VG +
Sbjct:   48 GDQPGASGDNDDDEPPPLPRLKRRDFTPAELRRFDGVQDPR-ILMAINGKVFDVTKGRKFYGPEGPYGVFAGRDASRGLATFCLDKEALKDEYDDLSDLTPAQQETLSDWDSQFTFKYHHVGKL 170          
BLAST of CK934412 vs. ExPASy Swiss-Prot
Match: PGRC1_BOVIN (Membrane-associated progesterone receptor component 1 OS=Bos taurus GN=PGRMC1 PE=2 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 4.508e-17
Identity = 46/121 (38.02%), Postives = 71/121 (58.68%), Query Frame = 1
Query:   10 QQRSREYEEQMEPLPPPVQLGEITEEELKQYDGSDSKKPLLMAIKSQIYDVSHSRMFYGPGGPYALFAGKDASRALAKMSFEE---KDLTGDISGLGPFELEALQDWEYKFMSKYVKVGSI 363
            Q  + + ++   P  P ++  + T  EL+++DG    + +LMAI  +++DV+  R FYGP GPY +FAG+DASR LA    ++   KD   D+S L P + E L DW+ +F  KY  VG +
Sbjct:   50 QPAASDSDDDEPPPLPRLKRRDFTPAELRRFDGVQDPR-ILMAINGKVFDVTKGRKFYGPEGPYGVFAGRDASRGLATFCLDKEALKDEYDDLSDLTPAQQETLSDWDSQFTFKYHHVGKL 169          
The following BLAST results are available for this feature:
BLAST of CK934412 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
MSBP2_ARATH2.889e-5680.58Membrane steroid-binding protein 2 OS=Arabidopsis ... [more]
MSBP1_ARATH1.342e-5368.48Membrane steroid-binding protein 1 OS=Arabidopsis ... [more]
SBP3_ARATH4.210e-2350.51Probable steroid-binding protein 3 OS=Arabidopsis ... [more]
NENF_RAT2.824e-1945.61Neudesin OS=Rattus norvegicus GN=Nenf PE=2 SV=1[more]
NENF_MOUSE3.122e-1843.86Neudesin OS=Mus musculus GN=Nenf PE=1 SV=1[more]
PGRC1_RAT2.024e-1738.71Membrane-associated progesterone receptor componen... [more]
NENF_BOVIN2.643e-1742.11Neudesin OS=Bos taurus GN=NENF PE=2 SV=1[more]
PGRC1_PIG4.508e-1738.02Membrane-associated progesterone receptor componen... [more]
PGRC1_MOUSE4.508e-1737.90Membrane-associated progesterone receptor componen... [more]
PGRC1_BOVIN4.508e-1738.02Membrane-associated progesterone receptor componen... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004259_E05 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIF_E05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934412 ID=CK934412; Name=CK934412; organism=Citrus sinensis; type=EST; length=692bp
GGGCATCATCAGCAGAGATCGAGGGAGTACGAGGAACAGATGGAGCCTCT
GCCACCGCCTGTTCAGCTAGGCGAGATTACCGAGGAGGAGCTCAAACAGT
ACGATGGCTCCGATTCCAAAAAGCCCCTTCTCATGGCCATCAAGAGCCAG
ATCTACGATGTCTCTCACAGCAGGATGTTTTATGGACCTGGTGGGCCATA
TGCGTTGTTTGCTGGAAAGGATGCTAGCAGGGCCCTTGCCAAGATGTCTT
TTGAGGAAAAAGATTTAACTGGTGATATCTCTGGTCTTGGTCCATTTGAG
TTGGAGGCATTGCAGGACTGGGAGTATAAGTTCATGAGCAAGTATGTTAA
GGTTGGATCTATCAAGTCGACAGTTCCAGTAACAGATGGAGCCTCCTCTG
GTGAATCCACTGAGCCTAAAGAAGGAGTTGTTGATACACCTGCAGAAAGT
AAAGGAGTTGTTGATACACCTGCAGAAACTAAAGAAGTAGATATCGCTAA
GCCTGCTGAATATGGTCCGTCAGAGACTGCAGCCGCTGGACCTGAGGCAA
CCCNNNNNTCTGATGATACTAAGAAGGAGTAAGCCGAACCCCATCTGTTG
ATGATGCTGAGGAGTAGAATTTAATCATAAGGCAAACCCCATCTGTTTGG
CTGCGTGTATTNNNGAATTTTTTCACATATTAGTAAGTTTAC
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