CK934414

Overview
NameCK934414
Unique NameCK934414
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length871
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934414_ssr711 microsatellite CK934414_ssr711:711..722. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1683 contig Csv1_Contig1683:1..870. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934414 vs. ExPASy Swiss-Prot
Match: AGL8_SOLTU (Agamous-like MADS-box protein AGL8 homolog OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 1.354e-62
Identity = 120/152 (78.95%), Postives = 136/152 (89.47%), Query Frame = 3
Query:  150 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSIS 605
            MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEV LIVFSTKGKLFEY+ DSCMER+LERYERY +AERQL   +    G+WTLE++KLKAR+EVLQRNQKH++GEDL  L++KELQ++E Q+DS LK IRSRKNQLM +SIS
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYANDSCMERLLERYERYSFAERQLVPTDHTSPGSWTLEHAKLKARLEVLQRNQKHYVGEDLESLNMKELQNLEHQLDSALKHIRSRKNQLMHESIS 152          
BLAST of CK934414 vs. ExPASy Swiss-Prot
Match: AGL8_ARATH (Agamous-like MADS-box protein AGL8 OS=Arabidopsis thaliana GN=AGL8 PE=1 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 5.144e-62
Identity = 137/245 (55.92%), Postives = 163/245 (66.53%), Query Frame = 3
Query:  150 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISXXXXXXXXXXXXXXXXXXXXXXXXXXXSXXXXXXXXXXXLNHDWNSSNVHLMQTLTNSS-----YQMGGGSGEEDEDTLTGHRANALLPAWML 869
            MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFS+KGKLFEYSTDSCMERILERY+RY Y+++QL   ++  + NW LE++KLKAR+EVL++N+++FMGEDL  LSLKELQS+E Q+D+ +K IRSRKNQ M +SIS                                       L    NSS+V L Q    SS      ++GG +G     T      N+LLPAWML
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSSKGKLFEYSTDSCMERILERYDRYLYSDKQLVGRDVSQSENWVLEHAKLKARVEVLEKNKRNFMGEDLDSLSLKELQSLEHQLDAAIKSIRSRKNQAMFESIS------ALQKKDKALQDHNNSLLKKIKEREKKTGQQEGQLVQCSNSSSVLLPQYCVTSSRDGFVERVGGENGGASSLT----EPNSLLPAWML 235          
BLAST of CK934414 vs. ExPASy Swiss-Prot
Match: AP1_SINAL (Floral homeotic protein APETALA 1 OS=Sinapis alba GN=AP1 PE=2 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 8.774e-62
Identity = 117/152 (76.97%), Postives = 138/152 (90.79%), Query Frame = 3
Query:  150 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSIS 605
            MGRGRVQLKRIENKINRQVTFSKRR+GLLKKAHEISVLCDAEVAL+VFS KGKLFEYSTDSCME+ILERYERY YAERQL A E + N NW++EY++LKA++E+L+RNQ+H++GEDL  +S KELQ++EQQ+D+ LK IRSRKNQLM  SI+
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALVVFSHKGKLFEYSTDSCMEKILERYERYSYAERQLIAPESDVNTNWSMEYNRLKAKIELLERNQRHYLGEDLQAMSSKELQNLEQQLDTALKHIRSRKNQLMHDSIN 152          
BLAST of CK934414 vs. ExPASy Swiss-Prot
Match: AP1_ARATH (Floral homeotic protein APETALA 1 OS=Arabidopsis thaliana GN=AP1 PE=1 SV=2)

HSP 1 Score: 237.269 bits (604), Expect = 8.774e-62
Identity = 116/152 (76.32%), Postives = 139/152 (91.45%), Query Frame = 3
Query:  150 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSIS 605
            MGRGRVQLKRIENKINRQVTFSKRR+GLLKKAHEISVLCDAEVAL+VFS KGKLFEYSTDSCME+ILERYERY YAERQL A E + N NW++EY++LKA++E+L+RNQ+H++GEDL  +S KELQ++EQQ+D+ LK IR+RKNQLM +SI+
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALVVFSHKGKLFEYSTDSCMEKILERYERYSYAERQLIAPESDVNTNWSMEYNRLKAKIELLERNQRHYLGEDLQAMSPKELQNLEQQLDTALKHIRTRKNQLMYESIN 152          
BLAST of CK934414 vs. ExPASy Swiss-Prot
Match: AGL8_SOLLC (Agamous-like MADS-box protein AGL8 homolog OS=Solanum lycopersicum GN=TDR4 PE=2 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 1.497e-61
Identity = 120/152 (78.95%), Postives = 134/152 (88.16%), Query Frame = 3
Query:  150 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSIS 605
            MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEV LIVFSTKGKLFEY+ DSCMERILERYERY +AE+QL   +     +WTLE+ KLKAR+EVLQRNQKH++GEDL  LS+KELQ++E Q+DS LK IRSRKNQLM +SIS
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYANDSCMERILERYERYSFAEKQLVPTDHTSPVSWTLEHRKLKARLEVLQRNQKHYVGEDLESLSMKELQNLEHQLDSALKHIRSRKNQLMHESIS 152          
BLAST of CK934414 vs. ExPASy Swiss-Prot
Match: AGL8_SINAL (Agamous-like MADS-box protein AGL8 homolog OS=Sinapis alba GN=AGL8 PE=2 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 9.700e-61
Identity = 130/240 (54.17%), Postives = 159/240 (66.25%), Query Frame = 3
Query:  150 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISXXXXXXXXXXXXXXXXXXXXXXXXXXXSXXXXXXXXXXXLNHDWNSSNVHLMQTLTNSSYQMGGGSGEEDEDTLTGHRANALLPAWML 869
            MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVAL++FS+KGKLFEYSTDSCME+ILERY+RY Y+++QL   +I  + NW LE++KLKAR+EVL++N+++FMGEDL  LSLKELQS+E Q+ + +K IRSRKNQ M +SIS                                       +    NSS +     LT+S     G    E+E   +    N+LLPAWML
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALVIFSSKGKLFEYSTDSCMEKILERYDRYLYSDKQLVGRDISQSENWVLEHAKLKARVEVLEKNKRNFMGEDLDSLSLKELQSLEHQLHAAIKSIRSRKNQAMFESIS-----ALQKKDKVLQDHNNALLKKIKEREKNTVHQEVQLIQCSNNSSILQPQYCLTSSRDGFVGRVEGENEGASSLAEPNSLLPAWML 235          
BLAST of CK934414 vs. ExPASy Swiss-Prot
Match: AGL8_SOLCO (Agamous-like MADS-box protein AGL8 homolog OS=Solanum commersonii GN=SCM1 PE=2 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 8.212e-60
Identity = 117/152 (76.97%), Postives = 134/152 (88.16%), Query Frame = 3
Query:  150 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSIS 605
            MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEV LIVFSTKGKLFEY+TDSCMER+LERYERY +AE+QL   +    G+WTLE +KLKAR+EVLQRN+K ++GEDL  L++KELQ++E Q+ S LK IRSRKNQLM +SIS
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYATDSCMERLLERYERYSFAEKQLVPTDHTSPGSWTLENAKLKARLEVLQRNEKLYVGEDLESLNMKELQNLEHQLASALKHIRSRKNQLMHESIS 152          
BLAST of CK934414 vs. ExPASy Swiss-Prot
Match: MAD14_ORYSJ (MADS-box transcription factor 14 OS=Oryza sativa subsp. japonica GN=MADS14 PE=1 SV=2)

HSP 1 Score: 226.483 bits (576), Expect = 1.549e-58
Identity = 112/152 (73.68%), Postives = 134/152 (88.16%), Query Frame = 3
Query:  150 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSIS 605
            MGRG+VQLKRIENKINRQVTFSKRRSGLLKKA+EISVLCDAEVALI+FSTKGKL+EY+TDSCM++ILERYERY YAE+ L + E +  GNW  EY KLKA++E +Q+ QKH MGEDL  L+LKELQ +EQQ+++ LK IRSRK+QLML+SI+
Sbjct:    1 MGRGKVQLKRIENKINRQVTFSKRRSGLLKKANEISVLCDAEVALIIFSTKGKLYEYATDSCMDKILERYERYSYAEKVLISAESDTQGNWCHEYRKLKAKVETIQKCQKHLMGEDLESLNLKELQQLEQQLENSLKHIRSRKSQLMLESIN 152          
BLAST of CK934414 vs. ExPASy Swiss-Prot
Match: MAD14_ORYSI (MADS-box transcription factor 14 OS=Oryza sativa subsp. indica GN=MADS14 PE=2 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 2.236e-57
Identity = 110/152 (72.37%), Postives = 133/152 (87.50%), Query Frame = 3
Query:  150 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSIS 605
            MGRG+VQLKRIEN INRQVTFSKRRSGLLKKA+EISVLCDAEVALI+FSTKGKL++Y+TDSCM++ILERYERY YAE+ L + E +  GNW  EY KLKA++E +Q+ QKH MGEDL  L+LKELQ +EQQ+++ LK IRSRK+QLML+SI+
Sbjct:    1 MGRGKVQLKRIENTINRQVTFSKRRSGLLKKANEISVLCDAEVALIIFSTKGKLYKYATDSCMDKILERYERYSYAEKVLISAESDTQGNWCHEYRKLKAKVETIQKCQKHLMGEDLESLNLKELQQLEQQLENSLKHIRSRKSQLMLESIN 152          
BLAST of CK934414 vs. ExPASy Swiss-Prot
Match: CAL_ARATH (Transcription factor CAULIFLOWER OS=Arabidopsis thaliana GN=CAL PE=1 SV=3)

HSP 1 Score: 222.246 bits (565), Expect = 2.921e-57
Identity = 109/154 (70.78%), Postives = 138/154 (89.61%), Query Frame = 3
Query:  150 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNG--NWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSIS 605
            MGRGRV+LKRIENKINRQVTFSKRR+GLLKKA EISVLCDAEV+LIVFS KGKLFEYS++SCME++LERYERY YAERQL A +   N   NW++EYS+LKA++E+L+RNQ+H++GE+L  +SLK+LQ++EQQ+++ LK IRSRKNQLM +S++
Sbjct:    1 MGRGRVELKRIENKINRQVTFSKRRTGLLKKAQEISVLCDAEVSLIVFSHKGKLFEYSSESCMEKVLERYERYSYAERQLIAPDSHVNAQTNWSMEYSRLKAKIELLERNQRHYLGEELEPMSLKDLQNLEQQLETALKHIRSRKNQLMNESLN 154          
The following BLAST results are available for this feature:
BLAST of CK934414 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
AGL8_SOLTU1.354e-6278.95Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]
AGL8_ARATH5.144e-6255.92Agamous-like MADS-box protein AGL8 OS=Arabidopsis ... [more]
AP1_SINAL8.774e-6276.97Floral homeotic protein APETALA 1 OS=Sinapis alba ... [more]
AP1_ARATH8.774e-6276.32Floral homeotic protein APETALA 1 OS=Arabidopsis t... [more]
AGL8_SOLLC1.497e-6178.95Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]
AGL8_SINAL9.700e-6154.17Agamous-like MADS-box protein AGL8 homolog OS=Sina... [more]
AGL8_SOLCO8.212e-6076.97Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]
MAD14_ORYSJ1.549e-5873.68MADS-box transcription factor 14 OS=Oryza sativa s... [more]
MAD14_ORYSI2.236e-5772.37MADS-box transcription factor 14 OS=Oryza sativa s... [more]
CAL_ARATH2.921e-5770.78Transcription factor CAULIFLOWER OS=Arabidopsis th... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004259_C11 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIF_C11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934414 ID=CK934414; Name=CK934414; organism=Citrus sinensis; type=EST; length=871bp
GGGATAGCAAAAGTTCTGCAGCACACTACTCACTACCTGCTCTAATCTCT
TTTTCTATAAAAGTACAGAGATTAGAGAGATACCCAGAAGAAGCCTGCAA
GTTTCTTTAGTGGAGAATTGCTGGTGATAATTATTAATAGATAGTTAATA
TGGGGAGAGGAAGGGTGCAGCTGAAGAGGATAGAGAACAAGATCAATAGA
CAAGTGACTTTCTCTAAGAGAAGGTCTGGTTTATTGAAAAAAGCCCATGA
GATCTCTGTGCTTTGTGACGCTGAAGTTGCTTTGATCGTCTTCTCCACTA
AAGGCAAGCTCTTTGAATACTCTACTGATTCATGCATGGAAAGAATCCTT
GAACGATATGAGAGGTATTGTTATGCGGAGAGGCAGCTTCAAGCAAATGA
GATTGAACCAAATGGAAACTGGACATTGGAATATTCCAAGCTTAAAGCTA
GGATGGAGGTTTTACAAAGAAATCAAAAGCATTTCATGGGAGAGGATCTT
GCAGACTTAAGTCTCAAAGAGCTTCAAAGTGTAGAGCAGCAGATTGATTC
TGGTCTTAAACTCATTCGATCAAGAAAGAACCAACTCATGCTTCAATCCA
TTTCAGAGCTTCAGAAAAAGGACAAGTTATTGAAAGAGCAAAACAACTTG
CTTGCAAAGAAGGTAAAAGAAAAGGAGAAGCTACTGAGCCAAGAGGCGCA
GTGCAGGGAACAGCAGCAGCAGCTAAATCATGACTGGAACTCATCCAATG
TTCATCTAATGCAGACATTGACCAATAGCTCTTACCAAATGGGAGGGGGC
AGCGGAGAGGAGGATGAGGATACTCTGACAGGACATCGAGCTAACGCTCT
GCTGCCTGCTTGGATGCTTCG
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