CK934418

Overview
NameCK934418
Unique NameCK934418
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length903
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5102 contig Csv1_Contig5102:1..874. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934418 vs. ExPASy Swiss-Prot
Match: PR1B3_ARATH (PRA1 family protein B3 OS=Arabidopsis thaliana GN=PRA1B3 PE=1 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.405e-49
Identity = 102/168 (60.71%), Postives = 113/168 (67.26%), Query Frame = 1
Query:  160 PIATPAFRAFLSRLSSSIRYGFSQRRPWSELVDRTAMSRPDSLAEAYSRIRKNLSYFKVNYVTXXXXXXXXXXXXXXXXXXXXXXXXGAWIFLYLFRPSDQPVVLFGRTFSDREXXXXXXXXXXXXXXXXXXGSLLTSALMVGAAIVCAHGAFRVPEDLFLDEQEPIN 663
            P++TPAFR FLSRLSSSIR   SQRRPW ELVDR+A+SRP+SL +AYSRIR+NL YFKVNYVT                         AWIFLYLFRPSDQP+V+ GRTFSDRE                  GSLLTSALM+G  IVC HGAFRVPEDLFLD+QEP N
Sbjct:   23 PVSTPAFRTFLSRLSSSIRQSLSQRRPWLELVDRSAISRPESLTDAYSRIRRNLPYFKVNYVTIVSLVLALSLLSHPFSLLVLLCLFCAWIFLYLFRPSDQPLVVLGRTFSDRETLGVLVILTIVVVFLTSVGSLLTSALMIGFGIVCLHGAFRVPEDLFLDDQEPAN 190          
BLAST of CK934418 vs. ExPASy Swiss-Prot
Match: PR1B1_ARATH (PRA1 family protein B1 OS=Arabidopsis thaliana GN=PRA1B1 PE=1 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 6.974e-49
Identity = 99/168 (58.93%), Postives = 113/168 (67.26%), Query Frame = 1
Query:  160 PIATPAFRAFLSRLSSSIRYGFSQRRPWSELVDRTAMSRPDSLAEAYSRIRKNLSYFKVNYVTXXXXXXXXXXXXXXXXXXXXXXXXGAWIFLYLFRPSDQPVVLFGRTFSDREXXXXXXXXXXXXXXXXXXGSLLTSALMVGAAIVCAHGAFRVPEDLFLDEQEPIN 663
            PI TPAFR F SRLS+SIR G SQRRPW+EL+DR++M+RP+SL +A SRIRKNL+YFKVNYV                         G W+FLYLFRPSDQP+V+FGRTFSDRE                  GSLLTSALM+G AIVC HGAF VP+DLFLDEQEP N
Sbjct:   20 PINTPAFRTFFSRLSTSIRDGLSQRRPWTELIDRSSMARPESLTDALSRIRKNLAYFKVNYVAIVSLVLAFSLFSHPLSLLVLIGLLGGWMFLYLFRPSDQPLVVFGRTFSDRETLLALVLSTIVVVFMTSVGSLLTSALMIGVAIVCVHGAFVVPDDLFLDEQEPAN 187          
BLAST of CK934418 vs. ExPASy Swiss-Prot
Match: PR1B2_ARATH (PRA1 family protein B2 OS=Arabidopsis thaliana GN=PRA1B2 PE=1 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.608e-45
Identity = 95/168 (56.55%), Postives = 110/168 (65.48%), Query Frame = 1
Query:  160 PIATPAFRAFLSRLSSSIRYGFSQRRPWSELVDRTAMSRPDSLAEAYSRIRKNLSYFKVNYVTXXXXXXXXXXXXXXXXXXXXXXXXGAWIFLYLFRPSDQPVVLFGRTFSDREXXXXXXXXXXXXXXXXXXGSLLTSALMVGAAIVCAHGAFRVPEDLFLDEQEPIN 663
            PI + AFR FLSRLSSS+R   SQRRPW ELVDR++ +RPDSL +++SRIRKNL+YFKVNY                          G+W+FLYLFR SDQP+VLFGR+FSDRE                  GSLLTSAL +G AIVC HGAFRVP+DLFLDEQEP N
Sbjct:   22 PINSHAFRTFLSRLSSSLRESLSQRRPWLELVDRSSFARPDSLTDSFSRIRKNLAYFKVNYSAIVSLVLAFSLLSHPFSLLVLLSLLGSWMFLYLFRSSDQPLVLFGRSFSDRETLLGLVLTTIVVVFMTSVGSLLTSALTIGIAIVCLHGAFRVPDDLFLDEQEPAN 189          
BLAST of CK934418 vs. ExPASy Swiss-Prot
Match: PR1B4_ARATH (PRA1 family protein B4 OS=Arabidopsis thaliana GN=PRA1B4 PE=1 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.361e-44
Identity = 85/166 (51.20%), Postives = 112/166 (67.47%), Query Frame = 1
Query:  160 PIATPAFRAFLSRLSSSIRYGFSQRRPWSELVDRTAMSRPDSLAEAYSRIRKNLSYFKVNYVTXXXXXXXXXXXXXXXXXXXXXXXXGAWIFLYLFRPSDQPVVLFGRTFSDREXXXXXXXXXXXXXXXXXXGSLLTSALMVGAAIVCAHGAFRVPEDLFLDEQEP 657
            PIATPAFR F+++++ +++ G S+RRPW+EL DR+A+S+P+S+++A  RIRKN SYFKVNY+T                         +W+FLYLFRP+DQP+VLFGRTFSDRE                  GS+L SA+M+G A++CAHGAFR PEDLFLDEQEP
Sbjct:   30 PIATPAFRNFINQITETVKNGLSKRRPWAELADRSALSKPESISDAAVRIRKNYSYFKVNYLTVATAIVGFSLVTHPFSLVFLLCLLASWLFLYLFRPTDQPIVLFGRTFSDRETLGCLILFSIFVIFLTDVGSVLVSAMMIGVALICAHGAFRAPEDLFLDEQEP 195          
BLAST of CK934418 vs. ExPASy Swiss-Prot
Match: PR1B5_ARATH (PRA1 family protein B5 OS=Arabidopsis thaliana GN=PRA1B5 PE=1 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 4.389e-35
Identity = 73/161 (45.34%), Postives = 99/161 (61.49%), Query Frame = 1
Query:  172 PAFRAFLSRLSSSIRYGFSQRRPWSELVDRTAMSRPDSLAEAYSRIRKNLSYFKVNYVTXXXXXXXXXXXXXXXXXXXXXXXXGAWIFLYLFRPSDQPVVLFGRTFSDREXXXXXXXXXXXXXXXXXXGSLLTSALMVGAAIVCAHGAFRVPEDLFLDEQE 654
            P  RAF++ ++ ++  G S+ RPWSEL+DR+A ++PDSL+EA +R RKN SYF+VNYV                          +W+FLYLFRPSD+P++LFGR+FS+ E                  GS+L SALM+G A +C HGAFR P+DLFLDEQ+
Sbjct:   34 PVVRAFVNGVTETVCGGLSRSRPWSELLDRSAFTKPDSLSEAGTRFRKNSSYFRVNYVCIVALILGFSLLAHPFSLILLLCLAASWLFLYLFRPSDRPLILFGRSFSEYETLGGLILSTIAVIFFTSVGSVLISALMIGIATICVHGAFRAPDDLFLDEQD 194          
BLAST of CK934418 vs. ExPASy Swiss-Prot
Match: PR1B6_ARATH (PRA1 family protein B6 OS=Arabidopsis thaliana GN=PRA1B6 PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 3.145e-33
Identity = 75/167 (44.91%), Postives = 94/167 (56.29%), Query Frame = 1
Query:  160 PIATPAFRAFLSRLSSSIRYGFSQRRPWSELVDRTAMSRPDSLAEAYSRIRKNLSYFKVNYVTXXXXXXXXXXXXXXXXXXXXXXXXGAWIFLYLFRPSDQPVVLFGRTFSDREXXXXXXXXXXXXXXXXXXGSLLTSALMVGAAIVCAHGAFRVPEDLFLDEQEPI 660
            P    + R  LSR+ +++R+  +  RPW+ELVDR+A SRP SL+EA SR+RKN SYF+ NY+T                         +W+FLY FRP+DQP+V+ GRTFSD E                  GSLL S L VG   V  HGAFR PEDLFL+EQE I
Sbjct:   20 PQLLSSLRVLLSRVLATVRHASADARPWAELVDRSAFSRPPSLSEATSRVRKNFSYFRANYITLVAILLAASLLTHPFALFLLASLAASWLFLYFFRPADQPLVIGGRTFSDLETLGILCLSTVVVMFMTSVGSLLMSTLAVGIMGVAIHGAFRAPEDLFLEEQEAI 186          
BLAST of CK934418 vs. ExPASy Swiss-Prot
Match: PR1F2_ARATH (PRA1 family protein F2 OS=Arabidopsis thaliana GN=PRA1F2 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.284e-14
Identity = 46/155 (29.68%), Postives = 66/155 (42.58%), Query Frame = 1
Query:  187 FLSRLSSSIRYGFSQRRPWSELVDRTAMSRPDSLAEAYSRIRKNLSYFKVNYVTXXXXXXXXXXXXXXXXXXXXXXXXGAWIFLYLFRPSDQPVVLFGRTFSDREXXXXXXXXXXXXXXXXXXGSLLTSALMVGAAIVCAHGAFRVPEDLFLDEQ 651
            ++SR    I+ G + RRPW  + D  +M+ P    +A SRI+ NL YF+ NY                            WIFLY  R  D+P+V+FG    DR                    S +  +L+  A +V  H A R  ++LFLDE+
Sbjct:   21 YISRAKHRIKSGLATRRPWKSMFDFESMTLPHGFFDAISRIKTNLGYFRANYAIGVLFILFLSLLYHPTSLIVLSILVVFWIFLYFLR--DEPLVVFGYQIDDRTVLIGLSVLTVVMLLLTHATSNILGSLLTAAVLVLIHAAVRRSDNLFLDEE 173          
BLAST of CK934418 vs. ExPASy Swiss-Prot
Match: PR1F3_ARATH (PRA1 family protein F3 OS=Arabidopsis thaliana GN=PRA1F3 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.722e-13
Identity = 46/154 (29.87%), Postives = 65/154 (42.21%), Query Frame = 1
Query:  190 LSRLSSSIRYGFSQRRPWSELVDRTAMSRPDSLAEAYSRIRKNLSYFKVNYVTXXXXXXXXXXXXXXXXXXXXXXXXGAWIFLYLFRPSDQPVVLFGRTFSDREXXXXXXXXXXXXXXXXXXGSLLTSALMVGAAIVCAHGAFRVPEDLFLDEQ 651
            LSR    I+ G + RR W  + D  +M  P  +++A++RI+ NL+YF++NY                            WIFLY  R  D+P+ LF     DR                      +  AL+ GA +V  H   R  EDLFLDE+
Sbjct:   22 LSRAKHRIKAGLATRRAWRVMFDFHSMGLPHGVSDAFTRIKTNLAYFRMNYAIVVLIVIFFSLIWHPTSLIVFTVLVVVWIFLYFLR--DEPIKLFRFQIDDRTVLIVLSVLTVVLLLLTNATFNIVGALVTGAVLVLIHSVVRKTEDLFLDEE 173          
BLAST of CK934418 vs. ExPASy Swiss-Prot
Match: PRA1E_ARATH (PRA1 family protein E OS=Arabidopsis thaliana GN=PRA1E PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.060e-12
Identity = 41/139 (29.50%), Postives = 62/139 (44.60%), Query Frame = 1
Query:  235 RPWSELVDRTAMSRPDSLAEAYSRIRKNLSYFKVNYVTXXXXXXXXXXXXXXXXXXXXXXXXGAWIFLYLFRPSDQPVVLFGRTFSDREXXXXXXXXXXXXXXXXXXGSLLTSALMVGAAIVCAHGAFRVPEDLFLDEQ 651
            RPW E++D +A+S P    EA + ++ N+SYF+ NY                            WI LY  R ++  +V+ G+   D+                   G  +  +L++G  IV AHGAFR  +DLFLDE+
Sbjct:   48 RPWREILDLSALSLPRGYDEAMAHLKHNISYFRGNYALAVLAIVFLGLIYHPMSMIAFIVVFIGWILLYFSRDANDSIVISGKEVDDKIVLVLLSLVTVLALVYTDVGENVLVSLIIGLLIVGAHGAFRNTDDLFLDEE 186          
BLAST of CK934418 vs. ExPASy Swiss-Prot
Match: PR1F4_ARATH (PRA1 family protein F4 OS=Arabidopsis thaliana GN=PRA1F4 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.772e-11
Identity = 43/154 (27.92%), Postives = 62/154 (40.26%), Query Frame = 1
Query:  190 LSRLSSSIRYGFSQRRPWSELVDRTAMSRPDSLAEAYSRIRKNLSYFKVNYVTXXXXXXXXXXXXXXXXXXXXXXXXGAWIFLYLFRPSDQPVVLFGRTFSDREXXXXXXXXXXXXXXXXXXGSLLTSALMVGAAIVCAHGAFRVPEDLFLDEQ 651
            +SR    I+ G + RR W  + D  +   P  +++ +SRI+ NL+YF+ NY                            WIFLY  R  D P+ +F     DR                      + +ALM GA +V  H   R  +DLFLDE+
Sbjct:   22 ISRAKQRIKDGLATRRSWRVMFDLHSTGLPHGVSDVFSRIKTNLAYFRSNYAIVILNVIFFSLIWHPTSLIVFTGLVFLWIFLYFLR--DVPLKVFRFQIDDRAVLIGLSVITIVLLLLTNATFNIVAALMAGAVLVLIHAVIRKTDDLFLDEE 173          
The following BLAST results are available for this feature:
BLAST of CK934418 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
PR1B3_ARATH1.405e-4960.71PRA1 family protein B3 OS=Arabidopsis thaliana GN=... [more]
PR1B1_ARATH6.974e-4958.93PRA1 family protein B1 OS=Arabidopsis thaliana GN=... [more]
PR1B2_ARATH1.608e-4556.55PRA1 family protein B2 OS=Arabidopsis thaliana GN=... [more]
PR1B4_ARATH1.361e-4451.20PRA1 family protein B4 OS=Arabidopsis thaliana GN=... [more]
PR1B5_ARATH4.389e-3545.34PRA1 family protein B5 OS=Arabidopsis thaliana GN=... [more]
PR1B6_ARATH3.145e-3344.91PRA1 family protein B6 OS=Arabidopsis thaliana GN=... [more]
PR1F2_ARATH7.284e-1429.68PRA1 family protein F2 OS=Arabidopsis thaliana GN=... [more]
PR1F3_ARATH4.722e-1329.87PRA1 family protein F3 OS=Arabidopsis thaliana GN=... [more]
PRA1E_ARATH3.060e-1229.50PRA1 family protein E OS=Arabidopsis thaliana GN=P... [more]
PR1F4_ARATH5.772e-1127.92PRA1 family protein F4 OS=Arabidopsis thaliana GN=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004259_D03 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIF_D03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934418 ID=CK934418; Name=CK934418; organism=Citrus sinensis; type=EST; length=903bp
GGGGCCTCTTCTCCCAAATTATCTCCAGTTCTTTCGCAGCATTGTAATTT
CTCCACGCGCCACCACTAATCACACGCGCCACCAATGGCCACTCCAGCGA
CGCTCCCAATCTCAAACCCTCAGACCAACAACATCACCACCACAACTCAA
TCCCAAGCACCCATCGCCACGCCCGCCTTCCGCGCGTTCCTGTCACGCCT
CTCCTCTTCGATCCGTTATGGCTTCTCTCAAAGGCGCCCCTGGTCCGAAC
TCGTTGACCGAACCGCCATGTCCCGACCCGACTCCTTAGCCGAAGCGTAC
TCTCGGATCCGAAAGAACCTCTCCTACTTCAAGGTCAATTATGTAACTTT
ACTCGGCCTCGTACTCGCATTCTCTCTCCTGTCCCATCCTTTCTCTCTCC
TCGTCCTGCTCTGCCTCCTAGGCGCTTGGATCTTCCTCTACCTCTTCCGC
CCTTCCGATCAACCCGTGGTCCTCTTTGGCCGTACGTTTTCCGATCGCGA
AACGCTCGGCGCTCTTGTCGTTTTGACTATCGTTGTCGTGTTCTTGACCA
GCGTCGGATCCTTGTTGACCTCAGCGTTGATGGTCGGAGCTGCGATCGTG
TGTGCGCATGGTGCGTTTAGGGTTCCTGAGGATCTGTTTTTGGACGAGCA
AGAGCCCATCAATTCCGGATTCCTGTCGTTCCTCGGTGGCGCCGCATCCG
CCGCTGCCCCCTCGGTTGCGGCACATGTCTGAAATGACTCGCTGGATCGT
CAATGATCAAGCGTATGATTAATTCATGATTCTTTTTAGGGAAAGGAATT
AATTTAGGGTTTTTGTTTCCTACTCTTAAATGTAACATTTTGGATCTTTA
TGTTTGATTTGTATGATTTCAATTTTGTTACATGCTACATGTTCAATATT
TTT
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