CK934419

Overview
NameCK934419
Unique NameCK934419
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length814
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7125 contig Csv1_Contig7125:41..854. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
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BLAST of CK934419 vs. ExPASy Swiss-Prot
Match: KRP1_ARATH (Cyclin-dependent kinase inhibitor 1 OS=Arabidopsis thaliana GN=KRP1 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.156e-12
Identity = 56/182 (30.77%), Postives = 84/182 (46.15%), Query Frame = 3 
Query:  168 ASYIQLRNRTID--TGEKTSTENRCSSPGLELSDHDRVXXXXXXXXXXXERIEFVDLKDESGDVEAETSTYYGCRERRXXXXXXXXXXXXXXXXXXXXXT-----AKPSSEANSRRRSTVEN---------------MPAKSEIEDFFAEAEKKLVKQFSQKYNFNFVKEEPMEGRYKWVGL 647
            ++Y+QLR+R I     EK+S+ +     G+  S                ++ E + L++E  D + ETSTY    +R+                     +      K S +     R T+E                MP +SEIEDFF EAEK+L ++F +KYNF+F KE+P+EGRY+WV L
Sbjct:   18 STYMQLRSRRIVYVRSEKSSSVSVVGDNGVSSS---------CSGSNEYKKKELIHLEEEDKDGDTETSTYRRGTKRKLFENLREEEKEELSKSMENYSSEFESAVKESLDCCCSGRKTMEETVTAEEEEKAKLMTEMPTESEIEDFFVEAEKQLKEKFKKKYNFDFEKEKPLEGRYEWVKL 190
The following BLAST results are available for this feature:
BLAST of CK934419 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
KRP1_ARATH1.156e-1230.77Cyclin-dependent kinase inhibitor 1 OS=Arabidopsis... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004259_D05 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIF_D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934419 ID=CK934419; Name=CK934419; organism=Citrus sinensis; type=EST; length=814bp
GGGGGAGAAAGTTGAGGGCTCAAGGGCTTACAGAAATTCCAGTGATGGAG
GTCGCTCGAGTTGGCGTAAGAACGCGAACGCGAGCACGAGCTGAAGCCCT
GGCGGCTACAACTTCTTCCAAGTTAGCTAAGAGAAGGAAACTAGAGTGTG
ATGAAGTCAAAAGCTTTGCGTCTTATATTCAGCTCAGGAATCGTACAATT
GATACTGGTGAGAAAACGTCGACGGAGAATCGGTGTTCAAGTCCTGGCTT
AGAATTATCTGATCATGATCGTGTTTCGACTTCATGTTGCTCCAGTCACG
GATCCAGTGAGAGAATAGAATTTGTAGATCTGAAGGATGAGAGTGGTGAT
GTGGAAGCTGAAACATCGACGTATTATGGATGCAGAGAAAGGAGAGACGC
GACGCTGTCCAGCGAGCTTGAAGCTGAAGCTGGAGAAGAATCAGACAGCC
TGGATTCAACTGCGAAGCCATCATCAGAGGCAAACTCTCGCCGTAGATCA
ACGGTGGAGAACATGCCTGCCAAGTCTGAAATTGAGGACTTCTTCGCTGA
AGCTGAGAAAAAGCTCGTAAAACAATTTTCTCAGAAGTATAACTTCAACT
TCGTGAAAGAGGAGCCAATGGAAGGACGTTACAAGTGGGTAGGGTTGAGG
CCATGAAGAAGATTACCAATGAAGAAATTAAATTAAAAACAATGGCGATA
TCTTCTGCAGATATACGTATTGTACTTCTAGGTATCAGTGATTGATGATT
TAGTTTCTGTTGTTTAGTGTAAGGTGTGTTTCGTATTTTTTTGTACAGCT
CGTCAGCCGTACTG
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