CK934421

Overview
NameCK934421
Unique NameCK934421
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length543
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934421_ssr25 microsatellite CK934421_ssr25:25..36. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5720 contig Csv1_Contig5720:49..591. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CK934421 vs. ExPASy Swiss-Prot
Match: ATP7_ARATH (Probable ATP synthase 24 kDa subunit, mitochondrial OS=Arabidopsis thaliana GN=At2g21870 PE=1 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 7.608e-52
Identity = 104/151 (68.87%), Postives = 120/151 (79.47%), Query Frame = 3 
Query:   63 MAFASRLASKSKQLCSSQVILQRQHAISVRFFANEAAPQALKGDEMLKNIFLDVKKKFETALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTYLLTLKEIRERRGLIDEHGAEAMMMDALEKVE 515
            MA+ASR  S+SKQL    VILQ+QHAI VR FA EAA    KGDEMLK +F D+K KF+ A+ +LRKEKIT+ PEDPAAV QYANVMKT+R+KAD+FSESQRI + I+T T  IPDAR YLL L+EIR RRGL DE GAEAMM +ALEKVE
Sbjct:    1 MAYASRFLSRSKQLQGGLVILQQQHAIPVRAFAKEAARPTFKGDEMLKGVFFDIKNKFQAAVDILRKEKITLDPEDPAAVKQYANVMKTIRQKADMFSESQRIKHDIDTETQDIPDARAYLLKLQEIRTRRGLTDELGAEAMMFEALEKVE 151
The following BLAST results are available for this feature:
BLAST of CK934421 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ATP7_ARATH7.608e-5268.87Probable ATP synthase 24 kDa subunit, mitochondria... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004259_B11 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIF_B11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934421 ID=CK934421; Name=CK934421; organism=Citrus sinensis; type=EST; length=543bp
GGGGACTCTAAAAGCAGAAACCTCGAAGAAGAAGAACAACAGCTGAGGTT
CTGATTCCGATCATGGCATTTGCTTCTCGCCTCGCATCCAAATCCAAACA
GCTGTGTAGTAGTCAAGTGATACTGCAACGGCAGCATGCAATTTCAGTTC
GTTTCTTTGCAAACGAAGCTGCTCCTCAGGCTCTTAAAGGAGATGAGATG
TTGAAAAACATCTTTTTGGATGTTAAGAAGAAATTTGAGACTGCCTTGGG
GGTACTCCGGAAGGAGAAGATCACCATTGCTCCAGAGGATCCTGCTGCTG
TTTCTCAGTATGCTAATGTCATGAAGACTGTCAGAGAGAAGGCAGACTTG
TTCTCAGAATCCCAACGAATAGCGTATACCATTGAAACACGAACAGCAGG
AATTCCAGATGCTCGAACATATTTGTTGACGCTCAAGGAAATAAGGGAGA
GGAGAGGTCTCATTGATGAGCATGGTGCTGAGGCTATGATGATGGATGCA
TTGGAGAAAGTCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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