CK934423

Overview
NameCK934423
Unique NameCK934423
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length731
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1191 contig Csv1_Contig1191:28..756. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934423 vs. ExPASy Swiss-Prot
Match: PIN4_BOVIN (Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 OS=Bos taurus GN=PIN4 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.159e-20
Identity = 52/105 (49.52%), Postives = 65/105 (61.90%), Query Frame = 2
Query:  230 VKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPFQEVSFNTPVGV------TSAPFKSTHGYHIILCEGRK 526
            VK RHILCEK GKI EA +KL+ G           +F+++AA+YSE    ++GGDLGW  RG M GPFQE +F  P+ V      T  P K+  GYHII+ EGRK
Sbjct:   38 VKVRHILCEKHGKILEAMEKLKSGM----------KFNEVAAQYSE-DKARQGGDLGWMTRGSMVGPFQEAAFALPISVLDKPVFTDPPVKTKFGYHIIMVEGRK 131          
BLAST of CK934423 vs. ExPASy Swiss-Prot
Match: PIN4_HUMAN (Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 OS=Homo sapiens GN=PIN4 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.374e-19
Identity = 52/105 (49.52%), Postives = 63/105 (60.00%), Query Frame = 2
Query:  230 VKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPFQEVSFNTPVG------VTSAPFKSTHGYHIILCEGRK 526
            VK RHILCEK GKI EA +KL+ G            F+++AA+YSE    ++GGDLGW  RG M GPFQE +F  PV        T  P K+  GYHII+ EGRK
Sbjct:   38 VKVRHILCEKHGKIMEAMEKLKSGM----------RFNEVAAQYSE-DKARQGGDLGWMTRGSMVGPFQEAAFALPVSGMDKPVFTDPPVKTKFGYHIIMVEGRK 131          
BLAST of CK934423 vs. ExPASy Swiss-Prot
Match: PIN4_MOUSE (Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 OS=Mus musculus GN=Pin4 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.100e-19
Identity = 52/105 (49.52%), Postives = 62/105 (59.05%), Query Frame = 2
Query:  230 VKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPFQEVSFNTPVG------VTSAPFKSTHGYHIILCEGRK 526
            VK RHILCEK GKI EA +KL+ G            FS++A +YSE    ++GGDLGW  RG M GPFQE +F  PV        T  P K+  GYHII+ EGRK
Sbjct:   38 VKVRHILCEKHGKIMEAMEKLKSGM----------RFSEVATQYSE-DKARQGGDLGWMTRGSMVGPFQEAAFALPVSGMDKPVFTDPPVKTKFGYHIIMVEGRK 131          
BLAST of CK934423 vs. ExPASy Swiss-Prot
Match: PIN4_XENTR (Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 OS=Xenopus tropicalis GN=pin4 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.289e-19
Identity = 50/105 (47.62%), Postives = 62/105 (59.05%), Query Frame = 2
Query:  230 VKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPFQEVSFNTPVGV------TSAPFKSTHGYHIILCEGRK 526
            VK RHILCEK GK+ EA +KL+ G            FS++A +YSE    ++GGDLGW  RG M GPFQ+ +F  PV        T  P K+  GYHII+ EGRK
Sbjct:   34 VKVRHILCEKHGKVMEAMEKLKSG----------VRFSEVATQYSE-DKARQGGDLGWMTRGSMVGPFQDAAFALPVSTMDKPVYTDPPVKTKFGYHIIMVEGRK 127          
BLAST of CK934423 vs. ExPASy Swiss-Prot
Match: PIN4_TAEGU (Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 OS=Taeniopygia guttata GN=PIN4 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.021e-19
Identity = 51/105 (48.57%), Postives = 62/105 (59.05%), Query Frame = 2
Query:  230 VKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPFQEVSFNTPVG------VTSAPFKSTHGYHIILCEGRK 526
            VK RHILCEK G+  EA +KL+ G            FS++AA+YSE    ++GGDLGW  RG M GPFQE +F  PV        T  P K+  GYHII+ EGRK
Sbjct:   35 VKVRHILCEKHGRAMEAMEKLKSG----------QRFSEVAAQYSE-DKARQGGDLGWMTRGSMVGPFQEAAFALPVSSMDKPVYTDPPVKTKFGYHIIMVEGRK 128          
BLAST of CK934423 vs. ExPASy Swiss-Prot
Match: PIN4_DANRE (Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 OS=Danio rerio GN=pin4 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.539e-18
Identity = 49/107 (45.79%), Postives = 63/107 (58.88%), Query Frame = 2
Query:  224 TYVKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPFQEVSFNTPVGV------TSAPFKSTHGYHIILCEGRK 526
            T VK RHILCEK GK  EA +K++ G            FS++AA+YSE    ++GGDLGW  RG M GPFQ+ +F  P+        T  P K+  GYHII+ EG+K
Sbjct:   33 TAVKVRHILCEKHGKCMEAMEKIKSGM----------RFSEVAAQYSE-DKARQGGDLGWMTRGSMVGPFQDAAFALPISTMDKPVYTDPPVKTKFGYHIIMVEGKK 128          
BLAST of CK934423 vs. ExPASy Swiss-Prot
Match: PIN4_EMENI (Peptidyl-prolyl cis-trans isomerase pin4 OS=Emericella nidulans GN=pin4 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.141e-13
Identity = 43/103 (41.75%), Postives = 61/103 (59.22%), Query Frame = 2
Query:  230 VKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPFQEVSFNTPVGVTSAP----FKSTHGYHIILCEGRK 526
            V  RHILCEK  K  EA +K+++G          A+F ++A EYSE    ++GG LGW  +G++  PF+EV+F+     T  P     K+ +GYHII+ EGRK
Sbjct:   37 VNVRHILCEKFSKKEEALEKIRNG----------AKFDEVAREYSE-DKARQGGSLGWKSKGELELPFEEVAFSLEQSTTGNPKIGEAKTGYGYHIIMVEGRK 128          
BLAST of CK934423 vs. ExPASy Swiss-Prot
Match: PIN4_NEUCR (Peptidyl-prolyl cis-trans isomerase pin-4 OS=Neurospora crassa GN=pin-4 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.336e-13
Identity = 42/103 (40.78%), Postives = 57/103 (55.34%), Query Frame = 2
Query:  230 VKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPFQEVSFNTPVGVTSAP----FKSTHGYHIILCEGRK 526
            +  RHILCEK GK  EA  K++DG          A+F  +A EYSE    + GG LGW  +G +   F++V+F      TS+P     K+  GYHII+ EG+K
Sbjct:   39 INVRHILCEKHGKKEEALAKIRDG----------ADFGAVAREYSE-DKARTGGSLGWKQKGTLDPEFEKVAFALETSSTSSPKIGEVKTQFGYHIIMVEGKK 130          
BLAST of CK934423 vs. ExPASy Swiss-Prot
Match: PIN4_GIBZE (Peptidyl-prolyl cis-trans isomerase PIN4 OS=Gibberella zeae GN=PIN4 PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 4.336e-13
Identity = 42/103 (40.78%), Postives = 56/103 (54.37%), Query Frame = 2
Query:  230 VKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPFQEVSFNTPVGVTSAP----FKSTHGYHIILCEGRK 526
            +  RHILCEK  K  EA  KL DG           +F ++A EYSE    ++GG LGW  +G +   F+EV+F      T++P     K+  GYHII+ EGRK
Sbjct:   42 INVRHILCEKHAKKEEALAKLNDG----------VKFDEVAREYSE-DKARQGGSLGWKTKGSLDPKFEEVAFALETSTTNSPKFVEVKTGFGYHIIMVEGRK 133          
BLAST of CK934423 vs. ExPASy Swiss-Prot
Match: PRSA_GEOTN (Foldase protein prsA OS=Geobacillus thermodenitrificans (strain NG80-2) GN=prsA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.811e-12
Identity = 40/94 (42.55%), Postives = 51/94 (54.26%), Query Frame = 2
Query:  230 VKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECP-SGKKGGDLGWFPRGKMAGPFQEVSFNTPVGVTSAPFKSTHGYHII 508
            V+A HIL E +    E   KL  G           +F+K+A EYS+ P S   GGDLGWF  GKM   F+E ++   VG  S P K+ +GYHII
Sbjct:  136 VRASHILVEDEKTAKEVKAKLDKG----------EDFAKLAKEYSQDPGSASNGGDLGWFGAGKMVKEFEEAAYKLKVGEVSDPIKTDYGYHII 219          
The following BLAST results are available for this feature:
BLAST of CK934423 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
PIN4_BOVIN8.159e-2049.52Peptidyl-prolyl cis-trans isomerase NIMA-interacti... [more]
PIN4_HUMAN2.374e-1949.52Peptidyl-prolyl cis-trans isomerase NIMA-interacti... [more]
PIN4_MOUSE3.100e-1949.52Peptidyl-prolyl cis-trans isomerase NIMA-interacti... [more]
PIN4_XENTR5.289e-1947.62Peptidyl-prolyl cis-trans isomerase NIMA-interacti... [more]
PIN4_TAEGU9.021e-1948.57Peptidyl-prolyl cis-trans isomerase NIMA-interacti... [more]
PIN4_DANRE1.539e-1845.79Peptidyl-prolyl cis-trans isomerase NIMA-interacti... [more]
PIN4_EMENI1.141e-1341.75Peptidyl-prolyl cis-trans isomerase pin4 OS=Emeric... [more]
PIN4_NEUCR4.336e-1340.78Peptidyl-prolyl cis-trans isomerase pin-4 OS=Neuro... [more]
PIN4_GIBZE4.336e-1340.78Peptidyl-prolyl cis-trans isomerase PIN4 OS=Gibber... [more]
PRSA_GEOTN2.811e-1242.55Foldase protein prsA OS=Geobacillus thermodenitrif... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004259_C02 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIF_C02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934423 ID=CK934423; Name=CK934423; organism=Citrus sinensis; type=EST; length=731bp
GGGGAGAGGTTGGCAGTTGGCTGCTGGTTCTTTTGTGTTTCTGAGTTACT
CTGTTGAACCCTTTCGATCGAAGTCAAATCTTTTTTAAGATTTTTCACCT
ATGGGAAAGGATTCTAAACCAAAGGATGGAGGGAAGGGTAAAGGAAAACA
GGCAGCTGGTGGAGCTGATGATTCAAAGGGTAAAGGAAAAGGCGGGAAGT
CAGCTGATGGCCTCGGCACCTGCACATATGTCAAAGCACGACACATCTTA
TGTGAGAAGCAAGGGAAGATCAATGAGGCATACAAGAAGCTGCAAGATGG
TTGGCTGAGCAATGGGGACAAGGTTCCGCAAGCTGAGTTTTCAAAGATAG
CTGCAGAATACTCAGAATGCCCGTCAGGAAAGAAGGGCGGAGATCTTGGA
TGGTTTCCACGTGGAAAGATGGCTGGCCCATTTCAGGAAGTTTCCTTCAA
TACTCCTGTTGGAGTTACCAGTGCACCTTTCAAATCTACGCATGGATACC
ACATAATCTTGTGTGAAGGGAGGAAGAATTGATCGGAAACAGTATGCCAA
TGAAGGGAATCTCTGAAGGGCGAGCATGGAGATGAAAATAATGTTATTGT
ATAATATGTGAATCTGGCTCATCCATGATGGTTGACATCCGTGACTGATT
GATGCTTTTATGGTTCGAAGTTAAATGTTAAATGAGTACTTTTCTTATAT
GCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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