CK934438

Overview
NameCK934438
Unique NameCK934438
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length625
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2568 contig Csv1_Contig2568:136..760. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934438 vs. ExPASy Swiss-Prot
Match: LEA5_CITSI (Late embryogenesis abundant protein Lea5 OS=Citrus sinensis GN=LEA5 PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 4.027e-48
Identity = 96/97 (98.97%), Postives = 96/97 (98.97%), Query Frame = 3
Query:  153 MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLGTISRTGIMEKNDLRPAVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHNVRAH 443
            MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLGTISRTGIMEKNDLRPAVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNH VRAH
Sbjct:    1 MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLGTISRTGIMEKNDLRPAVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH 97          
BLAST of CK934438 vs. ExPASy Swiss-Prot
Match: LEA5D_GOSHI (Late embryogenesis abundant protein Lea5-D OS=Gossypium hirsutum GN=LEA5-D PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.906e-22
Identity = 58/104 (55.77%), Postives = 70/104 (67.31%), Query Frame = 3
Query:  153 MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLG---TISRTGIMEKNDLRPAVREDSGA-----SSAWAPDPITGYYRPENRAVEIDPAELREMLLNHNVRA 440
            MARS+   KLL A + DG+ +SISRRGY+ A P     +  R G M K + R A++E S +     SSAWAPDP+TGYYRPEN   EID AELREMLLNH VR+
Sbjct:    1 MARSVSSFKLLGASIFDGLYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRDAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAAELREMLLNHRVRS 104          
BLAST of CK934438 vs. ExPASy Swiss-Prot
Match: LEA5A_GOSHI (Late embryogenesis abundant protein Lea5-A OS=Gossypium hirsutum GN=LEA5-A PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.082e-20
Identity = 55/104 (52.88%), Postives = 68/104 (65.38%), Query Frame = 3
Query:  153 MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLG---TISRTGIMEKNDLRPAVREDSGA-----SSAWAPDPITGYYRPENRAVEIDPAELREMLLNHNVRA 440
            MARS+   K L A V D + +SISRRGY+ A P     +  R G M K + R A++E S +     SSAWAPDP+TGYYRPEN   EID A+LREM+LNH VR+
Sbjct:    1 MARSVSSFKFLGASVFDALYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRYAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAADLREMMLNHRVRS 104          
The following BLAST results are available for this feature:
BLAST of CK934438 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
LEA5_CITSI4.027e-4898.97Late embryogenesis abundant protein Lea5 OS=Citrus... [more]
LEA5D_GOSHI2.906e-2255.77Late embryogenesis abundant protein Lea5-D OS=Goss... [more]
LEA5A_GOSHI2.082e-2052.88Late embryogenesis abundant protein Lea5-A OS=Goss... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004259_B09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIF_B09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934438 ID=CK934438; Name=CK934438; organism=Citrus sinensis; type=EST; length=625bp
GGGGGACAAGCACAGCACAAAGAGAGCGAGCCGCTAGCTTTTGCCTATAG
CTACTGCAGGAGCAGAATCTTTCTTCTTCTGTAGTAGCACTGTACAGAAA
CATCCCAGCTAGCTATCTTCATATCTATTAAGTTCTATAAGTAAATAAAA
CAATGGCCCGCTCTCTCTTCAAAGCTAAGCTTCTTCTTGCTCCTGTTGCT
GATGGCATCTCGCTCTCCATTAGCAGGAGAGGATATGCTGCAGCAGCACC
CTTGGGGACCATATCTCGGACTGGTATCATGGAGAAAAATGATTTGAGGC
CTGCGGTGAGAGAGGATTCTGGGGCCTCTTCTGCCTGGGCCCCAGATCCC
ATCACTGGGTACTACAGGCCGGAGAATCGGGCGGTCGAGATTGATCCAGC
AGAGCTTCGAGAGATGCTGTTGAACCACAATGTCAGGGCACACTAGGGAG
TGGTGGCGCATAGCAGCAGATCCTTTGCTGTTAGCGGTGCTTTAACTTTT
TAAGTGATGTTGTTACAGTAGCAATTTTGACTCACTCTTAAGTCTTTGCT
GTTGTATTGATATCAACTGTTATTGACAACTTTTAATAGTGCATTTCCAA
AAAAAAAAAAAAAAAAAAAAAAAAA
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