CK934481
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CK934481 vs. ExPASy Swiss-Prot
Match: RRP2_SPIOL (30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea GN=PSRP2 PE=1 SV=1) HSP 1 Score: 203.371 bits (516), Expect = 8.876e-52 Identity = 99/129 (76.74%), Postives = 116/129 (89.92%), Query Frame = 2 Query: 278 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVL 664 ARR+Y+GNIPRN++NDEL IV+EHGA+E AEV+YDKY+GRSRRF FV MKTVEDANAVIEKLN TEIGGR+IKVNITEKPL +D++ QAEDS FV+SPYKVY+GNLAKTVT+E+LK FSEKG+VL Sbjct: 83 ARRLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANAVIEKLNDTEIGGRKIKVNITEKPLEGMDIATTQAEDSQFVESPYKVYIGNLAKTVTNELLKDFFSEKGKVL 211
BLAST of CK934481 vs. ExPASy Swiss-Prot
Match: ROC5_NICSY (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 2.785e-21 Identity = 50/126 (39.68%), Postives = 83/126 (65.87%), Query Frame = 2 Query: 284 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPL---VQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEK 652 R+Y+GN+P ++ + +L++I E G V E++YD+ T RSR FAFV M +VE+A I +G+++GGR +KVN E P +V + +++ FVDSP+K+YV NL+ +TS+ L+ F+++ Sbjct: 115 RLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSPHKLYVANLSWALTSQGLRDAFADQ 240
BLAST of CK934481 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 1.690e-18 Identity = 50/128 (39.06%), Postives = 76/128 (59.38%), Query Frame = 2 Query: 284 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLL-QAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVL 664 ++++GN+P + D+ L ++ + G VE EVIYDK TGRSR F FV M + E+ A ++ NG E+ GR ++VN P + + S + DS +VYVGNLA V + L+ FSE+G+V+ Sbjct: 88 KIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVV 215 HSP 2 Score: 71.633 bits (174), Expect = 4.031e-12 Identity = 33/79 (41.77%), Postives = 49/79 (62.03%), Query Frame = 2 Query: 278 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITE 514 + RVY+GN+ +D D L + E G V A+V+YD+ +GRSR F FV + E+ N IE L+G ++ GR I+V+ E Sbjct: 187 SNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAE 265
BLAST of CK934481 vs. ExPASy Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 8.385e-18 Identity = 55/147 (37.41%), Postives = 76/147 (51.70%), Query Frame = 2 Query: 284 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSN--------------------FVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVL 664 ++++GN+P ++D+ L + + G VE EVIYDK TGRSR F FV M T E+ A ++ NG EI GR I+VN P + + S N VDS +VYVGNL+ V LK+ FSE+G V+ Sbjct: 88 KLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVV 234 HSP 2 Score: 68.1662 bits (165), Expect = 4.457e-11 Identity = 31/80 (38.75%), Postives = 51/80 (63.75%), Query Frame = 2 Query: 278 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEK 517 + RVY+GN+ +D+ L ++ E G V A+V+YD+ +GRSR F FV + ++ N I+ LNG ++ GR I+V+ E+ Sbjct: 206 SNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAEE 285
BLAST of CK934481 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 1.868e-17 Identity = 52/136 (38.24%), Postives = 79/136 (58.09%), Query Frame = 2 Query: 284 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNF---------VDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVL 664 ++++GN+ + D+ L ++ + G VE EVIYDK TGRSR F FV M + E+ A ++ NG E+ GR ++VN P + + S E+S+F DS +VYVGNLA V + L+ FSE+G+V+ Sbjct: 88 KIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSF--RENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVV 221 HSP 2 Score: 71.633 bits (174), Expect = 4.031e-12 Identity = 33/79 (41.77%), Postives = 49/79 (62.03%), Query Frame = 2 Query: 278 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITE 514 + RVY+GN+ +D D L + E G V A+V+YD+ +GRSR F FV + E+ N IE L+G ++ GR I+V+ E Sbjct: 193 SNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAE 271
BLAST of CK934481 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 2.440e-17 Identity = 51/141 (36.17%), Postives = 78/141 (55.32%), Query Frame = 2 Query: 284 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNF--------------VDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVL 664 ++++GN+P N+D+ +L ++ + G VE EVIYDK TGRSR F FV M +V + A ++ NG E+ GR ++VN P + D + S+F S +VYVGNL+ V L+ FSE+G+V+ Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKRED-GFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVV 231
BLAST of CK934481 vs. ExPASy Swiss-Prot
Match: ROC2_NICPL (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 4.162e-17 Identity = 54/147 (36.73%), Postives = 76/147 (51.70%), Query Frame = 2 Query: 284 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSN--------------------FVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVL 664 ++++GN+P ++D+ L + + G VE EVIYDK +GRSR F FV M T E+ A ++ NG EI GR I+VN P + + S N VDS +VYVGNL+ V LK+ FSE+G V+ Sbjct: 89 KLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVV 235 HSP 2 Score: 68.5514 bits (166), Expect = 3.412e-11 Identity = 31/80 (38.75%), Postives = 51/80 (63.75%), Query Frame = 2 Query: 278 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEK 517 + RVY+GN+ +D+ L ++ E G V A+V+YD+ +GRSR F FV + ++ N I+ LNG ++ GR I+V+ E+ Sbjct: 207 SNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAAEE 286
BLAST of CK934481 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.581e-16 Identity = 51/127 (40.16%), Postives = 78/127 (61.42%), Query Frame = 2 Query: 284 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVL 664 ++++GN+P ++D+++L I G VE AEVIY++ T RSR F FV M TVE+A +E LNG ++ GR++ VN P + +A +F S +VYVGNL V + L++ FSE G+V+ Sbjct: 56 KLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVN-KAAPRGSPE----RAPRGDFEPS-CRVYVGNLPWDVDTSRLEQLFSEHGKVV 176 HSP 2 Score: 74.3294 bits (181), Expect = 6.219e-13 Identity = 33/78 (42.31%), Postives = 49/78 (62.82%), Query Frame = 2 Query: 284 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEK 517 RVY+GN+P ++D L ++ EHG V A V+ D+ TGRSR F FV M + + N I L+G + GR ++VN+ E+ Sbjct: 150 RVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAEE 227
BLAST of CK934481 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.025e-15 Identity = 38/80 (47.50%), Postives = 54/80 (67.50%), Query Frame = 2 Query: 278 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEK 517 A RVY+GN+P ++DN L ++ EHG V +A V+YD+ TGRSR F FV M V++ N I L+G + GR I+VN+ E+ Sbjct: 243 AFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEE 322 HSP 2 Score: 74.3294 bits (181), Expect = 6.219e-13 Identity = 40/127 (31.50%), Postives = 73/127 (57.48%), Query Frame = 2 Query: 284 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVL 664 ++++GN+ ++++ L + ++ G VE AEVIY++ T +SR F FV M +V++A +EK N ++ GR + VN + + + + ++VYVGNL V + L++ FSE G+V+ Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERA------PRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVV 271
BLAST of CK934481 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 2.982e-15 Identity = 43/127 (33.86%), Postives = 75/127 (59.06%), Query Frame = 2 Query: 284 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVL 664 ++++GN+P ++D++ L ++ ++ G VE AEVIY++ T +SR F FV M TVE+A +E N ++ GR + VN + + + E S Y++YVGN+ + L++ FSE G+V+ Sbjct: 137 KLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVNKAARRGERPERPPRTFEQS------YRIYVGNIPWGIDDARLEQLFSEHGKVV 257 HSP 2 Score: 75.485 bits (184), Expect = 2.791e-13 Identity = 35/77 (45.45%), Postives = 49/77 (63.64%), Query Frame = 2 Query: 284 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITE 514 R+Y+GNIP ID+ L ++ EHG V A V+YD+ TGRSR F FV M + + + I L+G + GR I+VN+ E Sbjct: 231 RIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVAE 307 The following BLAST results are available for this feature:
BLAST of CK934481 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 12
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Sequences
The
following sequences are available for this feature:
EST sequence >CK934481 ID=CK934481; Name=CK934481; organism=Citrus sinensis; type=EST; length=666bpback to top |