CK934481

Overview
NameCK934481
Unique NameCK934481
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length666
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934481_ssr49 microsatellite CK934481_ssr49:49..63. BLAST: Citrus ESTs to Prunus persica proteins V1
CK934481_ssr237 microsatellite CK934481_ssr237:237..254. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4579 contig Csv1_Contig4579:5..670. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934481 vs. ExPASy Swiss-Prot
Match: RRP2_SPIOL (30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea GN=PSRP2 PE=1 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 8.876e-52
Identity = 99/129 (76.74%), Postives = 116/129 (89.92%), Query Frame = 2
Query:  278 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVL 664
            ARR+Y+GNIPRN++NDEL  IV+EHGA+E AEV+YDKY+GRSRRF FV MKTVEDANAVIEKLN TEIGGR+IKVNITEKPL  +D++  QAEDS FV+SPYKVY+GNLAKTVT+E+LK  FSEKG+VL
Sbjct:   83 ARRLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANAVIEKLNDTEIGGRKIKVNITEKPLEGMDIATTQAEDSQFVESPYKVYIGNLAKTVTNELLKDFFSEKGKVL 211          
BLAST of CK934481 vs. ExPASy Swiss-Prot
Match: ROC5_NICSY (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.785e-21
Identity = 50/126 (39.68%), Postives = 83/126 (65.87%), Query Frame = 2
Query:  284 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPL---VQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEK 652
            R+Y+GN+P ++ + +L++I  E G V   E++YD+ T RSR FAFV M +VE+A   I   +G+++GGR +KVN  E P     +V  + +++    FVDSP+K+YV NL+  +TS+ L+  F+++
Sbjct:  115 RLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSPHKLYVANLSWALTSQGLRDAFADQ 240          
BLAST of CK934481 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.690e-18
Identity = 50/128 (39.06%), Postives = 76/128 (59.38%), Query Frame = 2
Query:  284 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLL-QAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVL 664
            ++++GN+P + D+  L ++ +  G VE  EVIYDK TGRSR F FV M + E+  A  ++ NG E+ GR ++VN    P  + + S    +      DS  +VYVGNLA  V  + L+  FSE+G+V+
Sbjct:   88 KIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVV 215          

HSP 2 Score: 71.633 bits (174), Expect = 4.031e-12
Identity = 33/79 (41.77%), Postives = 49/79 (62.03%), Query Frame = 2
Query:  278 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITE 514
            + RVY+GN+   +D D L  +  E G V  A+V+YD+ +GRSR F FV   + E+ N  IE L+G ++ GR I+V+  E
Sbjct:  187 SNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAE 265          
BLAST of CK934481 vs. ExPASy Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.385e-18
Identity = 55/147 (37.41%), Postives = 76/147 (51.70%), Query Frame = 2
Query:  284 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSN--------------------FVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVL 664
            ++++GN+P ++D+  L  + +  G VE  EVIYDK TGRSR F FV M T E+  A  ++ NG EI GR I+VN    P  + + S       N                     VDS  +VYVGNL+  V    LK+ FSE+G V+
Sbjct:   88 KLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVV 234          

HSP 2 Score: 68.1662 bits (165), Expect = 4.457e-11
Identity = 31/80 (38.75%), Postives = 51/80 (63.75%), Query Frame = 2
Query:  278 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEK 517
            + RVY+GN+   +D+  L ++  E G V  A+V+YD+ +GRSR F FV   + ++ N  I+ LNG ++ GR I+V+  E+
Sbjct:  206 SNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAEE 285          
BLAST of CK934481 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.868e-17
Identity = 52/136 (38.24%), Postives = 79/136 (58.09%), Query Frame = 2
Query:  284 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNF---------VDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVL 664
            ++++GN+  + D+  L ++ +  G VE  EVIYDK TGRSR F FV M + E+  A  ++ NG E+ GR ++VN    P  + + S    E+S+F          DS  +VYVGNLA  V  + L+  FSE+G+V+
Sbjct:   88 KIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSF--RENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVV 221          

HSP 2 Score: 71.633 bits (174), Expect = 4.031e-12
Identity = 33/79 (41.77%), Postives = 49/79 (62.03%), Query Frame = 2
Query:  278 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITE 514
            + RVY+GN+   +D D L  +  E G V  A+V+YD+ +GRSR F FV   + E+ N  IE L+G ++ GR I+V+  E
Sbjct:  193 SNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAE 271          
BLAST of CK934481 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.440e-17
Identity = 51/141 (36.17%), Postives = 78/141 (55.32%), Query Frame = 2
Query:  284 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNF--------------VDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVL 664
            ++++GN+P N+D+ +L ++ +  G VE  EVIYDK TGRSR F FV M +V +  A  ++ NG E+ GR ++VN    P  + D    +   S+F                S  +VYVGNL+  V    L+  FSE+G+V+
Sbjct:   92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKRED-GFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVV 231          
BLAST of CK934481 vs. ExPASy Swiss-Prot
Match: ROC2_NICPL (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.162e-17
Identity = 54/147 (36.73%), Postives = 76/147 (51.70%), Query Frame = 2
Query:  284 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSN--------------------FVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVL 664
            ++++GN+P ++D+  L  + +  G VE  EVIYDK +GRSR F FV M T E+  A  ++ NG EI GR I+VN    P  + + S       N                     VDS  +VYVGNL+  V    LK+ FSE+G V+
Sbjct:   89 KLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVV 235          

HSP 2 Score: 68.5514 bits (166), Expect = 3.412e-11
Identity = 31/80 (38.75%), Postives = 51/80 (63.75%), Query Frame = 2
Query:  278 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEK 517
            + RVY+GN+   +D+  L ++  E G V  A+V+YD+ +GRSR F FV   + ++ N  I+ LNG ++ GR I+V+  E+
Sbjct:  207 SNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAAEE 286          
BLAST of CK934481 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.581e-16
Identity = 51/127 (40.16%), Postives = 78/127 (61.42%), Query Frame = 2
Query:  284 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVL 664
            ++++GN+P ++D+++L  I    G VE AEVIY++ T RSR F FV M TVE+A   +E LNG ++ GR++ VN    P    +    +A   +F  S  +VYVGNL   V +  L++ FSE G+V+
Sbjct:   56 KLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVN-KAAPRGSPE----RAPRGDFEPS-CRVYVGNLPWDVDTSRLEQLFSEHGKVV 176          

HSP 2 Score: 74.3294 bits (181), Expect = 6.219e-13
Identity = 33/78 (42.31%), Postives = 49/78 (62.82%), Query Frame = 2
Query:  284 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEK 517
            RVY+GN+P ++D   L ++  EHG V  A V+ D+ TGRSR F FV M +  + N  I  L+G  + GR ++VN+ E+
Sbjct:  150 RVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAEE 227          
BLAST of CK934481 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.025e-15
Identity = 38/80 (47.50%), Postives = 54/80 (67.50%), Query Frame = 2
Query:  278 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEK 517
            A RVY+GN+P ++DN  L ++  EHG V +A V+YD+ TGRSR F FV M  V++ N  I  L+G  + GR I+VN+ E+
Sbjct:  243 AFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEE 322          

HSP 2 Score: 74.3294 bits (181), Expect = 6.219e-13
Identity = 40/127 (31.50%), Postives = 73/127 (57.48%), Query Frame = 2
Query:  284 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVL 664
            ++++GN+  ++++  L  + ++ G VE AEVIY++ T +SR F FV M +V++A   +EK N  ++ GR + VN       + + +          +  ++VYVGNL   V +  L++ FSE G+V+
Sbjct:  151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERA------PRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVV 271          
BLAST of CK934481 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.982e-15
Identity = 43/127 (33.86%), Postives = 75/127 (59.06%), Query Frame = 2
Query:  284 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVL 664
            ++++GN+P ++D++ L ++ ++ G VE AEVIY++ T +SR F FV M TVE+A   +E  N  ++ GR + VN   +   + +      E S      Y++YVGN+   +    L++ FSE G+V+
Sbjct:  137 KLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVNKAARRGERPERPPRTFEQS------YRIYVGNIPWGIDDARLEQLFSEHGKVV 257          

HSP 2 Score: 75.485 bits (184), Expect = 2.791e-13
Identity = 35/77 (45.45%), Postives = 49/77 (63.64%), Query Frame = 2
Query:  284 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITE 514
            R+Y+GNIP  ID+  L ++  EHG V  A V+YD+ TGRSR F FV M +  + +  I  L+G  + GR I+VN+ E
Sbjct:  231 RIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVAE 307          
The following BLAST results are available for this feature:
BLAST of CK934481 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
RRP2_SPIOL8.876e-5276.7430S ribosomal protein 2, chloroplastic OS=Spinacia... [more]
ROC5_NICSY2.785e-2139.6833 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC1_NICSY1.690e-1839.0629 kDa ribonucleoprotein A, chloroplastic OS=Nicot... [more]
ROC2_NICSY8.385e-1837.4129 kDa ribonucleoprotein B, chloroplastic OS=Nicot... [more]
ROC1_NICPL1.868e-1738.2430 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC1_ARATH2.440e-1736.17Ribonucleoprotein At2g37220, chloroplastic OS=Arab... [more]
ROC2_NICPL4.162e-1736.7331 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC1_SPIOL1.581e-1640.1628 kDa ribonucleoprotein, chloroplastic OS=Spinaci... [more]
ROC3_ARATH1.025e-1547.5031 kDa ribonucleoprotein, chloroplastic OS=Arabido... [more]
ROC4_NICSY2.982e-1533.8631 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004258_F06 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IF_F06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934481 ID=CK934481; Name=CK934481; organism=Citrus sinensis; type=EST; length=666bp
CGGGCCGGGGNNNNCCAAACGACTCAAATCAACGGCAATGACTTCATTAT
CATCATCATCATCTCTAATACTGTCTCAACAAAATCTCATTTTTTAAAAA
ACCCACTTCACATTTCAATCAAGACAACCAATTCTTCAAATCAGATTTCC
AAAACTCTCATATTCTTTGCACAATCTCAAGACAGCAAGCACCGAAGAAT
CCACTACGAGACTCTTTGCAGTAGCTGAAGAAACTACATCATCATCATCA
TCATCGGTTGACACGTCTTCAGAGTTTGCTAGGAGGGTCTATATTGGTAA
CATTCCTAGAAATATTGATAATGATGAACTTACAAAGATTGTTCAAGAAC
ACGGCGCCGTCGAGAAAGCTGAGGTTATTTATGATAAGTACACTGGAAGG
AGTCGCCGATTTGCCTTTGTTATGATGAAAACTGTTGAGGATGCAAATGC
AGTGATTGAGAAACTGAACGGCACTGAAATTGGTGGACGTGAGATCAAAG
TAAACATCACAGAGAAACCTTTGGTGCAAGTTGATTTGTCCCTCCTCCAG
GCAGAGGATTCTAACTTTGTGGACAGTCCGTATAAAGTTTATGTAGGAAA
TCTTGCAAAGACAGTGACCTCGGAAATGCTCAAAAAGTGTTTCTCTGAGA
AGGGACAGGTTCTTAG
back to top