CK934486

Overview
NameCK934486
Unique NameCK934486
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length491
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934486_ssr361 microsatellite CK934486_ssr361:361..372. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5337 contig Csv1_Contig5337:81..571. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934486 vs. ExPASy Swiss-Prot
Match: LTI6B_ORYSJ (Hydrophobic protein LTI6B OS=Oryza sativa subsp. japonica GN=LTI6B PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.358e-11
Identity = 33/53 (62.26%), Postives = 34/53 (64.15%), Query Frame = 1
Query:   46 GTATCXXXXXXXXXXXXGVFLKFGCKVEFWTCLLLTIFGDIPGIIYAVYAITK 204
            GTA C            GVFLKFGC  EFW CLLLT  G IPGIIYA+YAITK
Sbjct:    3 GTANCIDILIAIILPPLGVFLKFGCGHEFWICLLLTFLGYIPGIIYAIYAITK 55          
BLAST of CK934486 vs. ExPASy Swiss-Prot
Match: LTI6B_ORYSI (Hydrophobic protein LTI6B OS=Oryza sativa subsp. indica GN=LTI6B PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 1.358e-11
Identity = 33/53 (62.26%), Postives = 34/53 (64.15%), Query Frame = 1
Query:   46 GTATCXXXXXXXXXXXXGVFLKFGCKVEFWTCLLLTIFGDIPGIIYAVYAITK 204
            GTA C            GVFLKFGC  EFW CLLLT  G IPGIIYA+YAITK
Sbjct:    3 GTANCIDILIAIILPPLGVFLKFGCGHEFWICLLLTFLGYIPGIIYAIYAITK 55          
BLAST of CK934486 vs. ExPASy Swiss-Prot
Match: LTI6A_ORYSJ (Hydrophobic protein LTI6A OS=Oryza sativa subsp. japonica GN=LTI6A PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.358e-11
Identity = 34/57 (59.65%), Postives = 37/57 (64.91%), Query Frame = 1
Query:   34 MADEGTATCXXXXXXXXXXXXGVFLKFGCKVEFWTCLLLTIFGDIPGIIYAVYAITK 204
            MAD  TATC            GVF KFGC +EFW CLLLT FG +PGIIYAV+ ITK
Sbjct:    1 MADS-TATCIDIILAIILPPLGVFFKFGCGIEFWICLLLTFFGYLPGIIYAVWVITK 56          
BLAST of CK934486 vs. ExPASy Swiss-Prot
Match: RCI2B_ARATH (Hydrophobic protein RCI2B OS=Arabidopsis thaliana GN=RCI2B PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.026e-11
Identity = 28/36 (77.78%), Postives = 33/36 (91.67%), Query Frame = 1
Query:   97 GVFLKFGCKVEFWTCLLLTIFGDIPGIIYAVYAITK 204
            GVFLKFGCKVEFW CL+LT+FG +PGI+YA+Y ITK
Sbjct:   19 GVFLKFGCKVEFWICLILTLFGYLPGILYALYIITK 54          
The following BLAST results are available for this feature:
BLAST of CK934486 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
LTI6B_ORYSJ1.358e-1162.26Hydrophobic protein LTI6B OS=Oryza sativa subsp. j... [more]
LTI6B_ORYSI1.358e-1162.26Hydrophobic protein LTI6B OS=Oryza sativa subsp. i... [more]
LTI6A_ORYSJ1.358e-1159.65Hydrophobic protein LTI6A OS=Oryza sativa subsp. j... [more]
RCI2B_ARATH3.026e-1177.78Hydrophobic protein RCI2B OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004258_D12 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IF_D12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934486 ID=CK934486; Name=CK934486; organism=Citrus sinensis; type=EST; length=491bp
TTTTTTTTTTTTTTTTGCAAGAATCAATCCAAGATGGCAGATGAAGGCAC
AGCAACATGCATTGATATTATCTTGGCTATCATTTTGCCTCCTCTCGGTG
TCTTTCTCAAATTTGGCTGCAAGGTTGAGTTTTGGACCTGTTTGCTGTTG
ACAATTTTCGGGGATATCCCTGGAATTATTTATGCTGTTTATGCCATCAC
CAAGAATTGATCTCTCTCTTCTTATTCTATGGAGAGATCTGAGGGGCAGA
ATGTGTTTATGAAATTTTTATTTACAACCATTTGATGGACAGTTCTGATT
TGATGTAGCCAGNNNGATTATGATTCTTCTTTTAAGTGTTGTGTGCGCGC
GTGTGTGAAAGAGTGAGTGAGTGAAGTGTTCCTTTGTTGATCTTTAATTT
TTTCCGCCCTTTTTGTATGATTTGTCCCTTTTAAGAACTTTAGTTCATTA
TTTTAATGGAAATTCCGCGACAAAAAATTTTTCTTGGGCTG
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