CK934499

Overview
NameCK934499
Unique NameCK934499
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length810
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934499_ssr401 microsatellite CK934499_ssr401:401..420. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1691 contig Csv1_Contig1691:1..810. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934499 vs. ExPASy Swiss-Prot
Match: CSLB4_ARATH (Cellulose synthase-like protein B4 OS=Arabidopsis thaliana GN=CSLB4 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 6.893e-53
Identity = 72/110 (65.45%), Postives = 83/110 (75.45%), Query Frame = 2
Query:  437 RIQELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYFXXXXXXXXXXXXXXQDWKNMKEE 766
            R+ ELPPVDMFVTTAD   EPP+I VNTVLSLLAV+YP +KLACYVSDD CSPL ++SL EASKFAK+WVPFCKKYNV++RAPF YF              +DW+  K E
Sbjct:   88 RVHELPPVDMFVTTADPVREPPLIVVNTVLSLLAVNYPANKLACYVSDDGCSPLTYFSLKEASKFAKIWVPFCKKYNVRVRAPFMYF-RNSPEAAEGSEFSKDWEMTKRE 196          

HSP 2 Score: 78.9518 bits (193), Expect = 6.893e-53
Identity = 36/88 (40.91%), Postives = 47/88 (53.41%), Query Frame = 3
Query:   63 MANTKSSCLPLYEKVFHKNTYHRAXXXXXXXXXXXXXXXXXXXXKNHGFAWFLAFLCESCFTFIWILIVNCKWTPLTYKTYPQRLQER 326
            MA + S   PL E++ HK+ + RA                          W +AFLCE+CFTF+W+LI N KW+P  YKTYP+RL ER
Sbjct:    1 MAESSSPLPPLCERISHKSYFLRAVDLTILGLLLSLLLYRILHVNQKDTVWIVAFLCETCFTFVWLLITNIKWSPADYKTYPERLDER 88          
BLAST of CK934499 vs. ExPASy Swiss-Prot
Match: CSLB3_ARATH (Cellulose synthase-like protein B3 OS=Arabidopsis thaliana GN=CSLB3 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 6.780e-50
Identity = 64/87 (73.56%), Postives = 76/87 (87.36%), Query Frame = 2
Query:  437 RIQELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF 697
            R+ +LP VDMFVTTAD   EPPI+  NT+LSLLAV+YP +KLACYVSDD CSPL ++SL EASKFAK+WVPFCKKYN+++RAPFRYF
Sbjct:   88 RVHDLPSVDMFVTTADPVREPPILVANTLLSLLAVNYPANKLACYVSDDGCSPLTYFSLKEASKFAKIWVPFCKKYNIKVRAPFRYF 174          

HSP 2 Score: 74.3294 bits (181), Expect = 6.780e-50
Identity = 35/88 (39.77%), Postives = 49/88 (55.68%), Query Frame = 3
Query:   63 MANTKSSCLPLYEKVFHKNTYHRAXXXXXXXXXXXXXXXXXXXXKNHGFAWFLAFLCESCFTFIWILIVNCKWTPLTYKTYPQRLQER 326
            MA++ SS  PL EK+ +KN + R                       +   W +AFLCES F+FIW+LI + KW+P +YK+YP+RL ER
Sbjct:    1 MADSSSSLPPLCEKISYKNYFLRVVDLTILGFLFSLLLYRILLMNQNNSVWVVAFLCESFFSFIWLLITSIKWSPASYKSYPERLDER 88          
BLAST of CK934499 vs. ExPASy Swiss-Prot
Match: CSLB6_ARATH (Cellulose synthase-like protein B6 OS=Arabidopsis thaliana GN=CSLB6 PE=2 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 9.593e-49
Identity = 71/110 (64.55%), Postives = 81/110 (73.64%), Query Frame = 2
Query:  437 RIQELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYFXXXXXXXXXXXXXXQDWKNMKEE 766
            R+ +LP VDMFV TAD   EPPII VNTVLSLLAV+YP +KLACYVSDD CSPL ++SL EASKF K+W PFCKKYNV++RAPFRYF              +DWK MK E
Sbjct:   88 RVHDLPSVDMFVPTADPVREPPIIVVNTVLSLLAVNYPANKLACYVSDDGCSPLTYFSLKEASKFVKIWAPFCKKYNVRVRAPFRYF-LNPLVATDDSVFSKDWKMMKRE 196          

HSP 2 Score: 67.781 bits (164), Expect = 9.593e-49
Identity = 33/88 (37.50%), Postives = 45/88 (51.14%), Query Frame = 3
Query:   63 MANTKSSCLPLYEKVFHKNTYHRAXXXXXXXXXXXXXXXXXXXXKNHGFAWFLAFLCESCFTFIWILIVNCKWTPLTYKTYPQRLQER 326
            MA++ SS LPL E++ HK+   R                       +   W +AFLCESCF+F+W++I   KW+P   K YP RL ER
Sbjct:    1 MADSSSSLLPLCERISHKSYILRIVDLTILVLLFSLLWYRILHMCENNTIWLVAFLCESCFSFMWLIITCIKWSPAEDKPYPNRLDER 88          
BLAST of CK934499 vs. ExPASy Swiss-Prot
Match: CSLB2_ARATH (Cellulose synthase-like protein B2 OS=Arabidopsis thaliana GN=CSLB2 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 3.608e-48
Identity = 69/110 (62.73%), Postives = 82/110 (74.55%), Query Frame = 2
Query:  437 RIQELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYFXXXXXXXXXXXXXXQDWKNMKEE 766
            R+ +LP VDMFV TAD   EPPI+ VNTVLSLLAV+YP +KLACYVSDD CSPL ++SL EASKFAK+WVPFCKKYN+++RAPFRYF              +DW+  K E
Sbjct:   88 RVYDLPSVDMFVPTADPVREPPIMVVNTVLSLLAVNYPANKLACYVSDDGCSPLTYFSLKEASKFAKIWVPFCKKYNLKVRAPFRYF-LNPFAATEGSEFSRDWEMTKRE 196          

HSP 2 Score: 69.3218 bits (168), Expect = 3.608e-48
Identity = 33/88 (37.50%), Postives = 44/88 (50.00%), Query Frame = 3
Query:   63 MANTKSSCLPLYEKVFHKNTYHRAXXXXXXXXXXXXXXXXXXXXKNHGFAWFLAFLCESCFTFIWILIVNCKWTPLTYKTYPQRLQER 326
            MA++  S  PLYE + +K+   RA                      +G  W +AFLCESCF+F+W+L    KW+P   K YP RL ER
Sbjct:    1 MADSSCSLPPLYENISYKSYILRAVDLTILGLLFSLLLHRILYMSQNGIIWLVAFLCESCFSFVWLLSTCTKWSPAETKPYPDRLDER 88          
BLAST of CK934499 vs. ExPASy Swiss-Prot
Match: CSLB1_ARATH (Cellulose synthase-like protein B1 OS=Arabidopsis thaliana GN=CSLB1 PE=2 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 6.503e-44
Identity = 67/110 (60.91%), Postives = 80/110 (72.73%), Query Frame = 2
Query:  437 RIQELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYFXXXXXXXXXXXXXXQDWKNMKEE 766
            R+ +LP VDMFV TAD   EPPI+ V+TVLSLLAV+YP +KLACYVSDD CSPL ++SL EASKFAK+WVPFCKKYN ++RAP RYF              +DW+  K E
Sbjct:   88 RVHDLPSVDMFVPTADPVREPPIMVVDTVLSLLAVNYPANKLACYVSDDGCSPLTYFSLKEASKFAKIWVPFCKKYNTRVRAPSRYFLKPISVATEDYEFNRDWEKTKRE 197          

HSP 2 Score: 55.0694 bits (131), Expect = 6.503e-44
Identity = 28/88 (31.82%), Postives = 40/88 (45.45%), Query Frame = 3
Query:   63 MANTKSSCLPLYEKVFHKNTYHRAXXXXXXXXXXXXXXXXXXXXKNHGFAWFLAFLCESCFTFIWILIVNCKWTPLTYKTYPQRLQER 326
            MA++  S  PL E++ + N + RA                      +   W +AF CESCF  + +LI   KW+P   K +P RL ER
Sbjct:    1 MADSSFSLPPLCERISYTNYFLRAVYLTVLGLFFSLLLHRIRHTSEYDNVWLVAFFCESCFFLVCLLITCLKWSPADTKPFPDRLDER 88          
BLAST of CK934499 vs. ExPASy Swiss-Prot
Match: CSLH1_ORYSJ (Cellulose synthase-like protein H1 OS=Oryza sativa subsp. japonica GN=CSLH1 PE=2 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 4.864e-41
Identity = 68/112 (60.71%), Postives = 80/112 (71.43%), Query Frame = 2
Query:  437 RIQELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPV--HKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYFXXXXXXXXXXXXXXQDWKNMKEE 766
            RI ELP VDMFVTTAD  LEPP++TVNTVLSLLA+DYP    KLACYVSDD CSPL  Y+L EA++FA+ WVPFC+++ V +RAPFRYF              +DW  MK E
Sbjct:   87 RIDELPAVDMFVTTADPVLEPPLVTVNTVLSLLALDYPAAGEKLACYVSDDGCSPLTCYALREAARFARTWVPFCRRHGVAVRAPFRYFSSTPEFGPADGKFLEDWTFMKSE 198          

HSP 2 Score: 48.521 bits (114), Expect = 4.864e-41
Identity = 18/35 (51.43%), Postives = 26/35 (74.29%), Query Frame = 3
Query:  222 AFLCESCFTFIWILIVNCKWTPLTYKTYPQRLQER 326
            A  CE+ FTF+W+L VN KW+P+ + T+P+ L ER
Sbjct:   53 ALACEAWFTFMWLLNVNAKWSPVRFDTFPENLAER 87          
BLAST of CK934499 vs. ExPASy Swiss-Prot
Match: CSLB5_ARATH (Cellulose synthase-like protein B5 OS=Arabidopsis thaliana GN=CSLB5 PE=2 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 1.067e-34
Identity = 76/145 (52.41%), Postives = 93/145 (64.14%), Query Frame = 2
Query:  344 LALIISASFAIVFVILQVXXXXXXXXCVRLN----RIQELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYFXXXXXXXXXXXXXXQDWKNMKEE 766
            LA    + F++V++I              +N    R+ +LP +DMFV TAD   E PIITVNTVLSLLAV+YP +KLACYVSDD CSPL ++SL EASKF K+W PFCKKYNV++RAPFRYF              +DWK MK E
Sbjct:   53 LAFFCESCFSLVWLIFTCLKWSPAEDIPYINTLNERVHDLPSLDMFVPTADTVRESPIITVNTVLSLLAVNYPANKLACYVSDDGCSPLTYFSLKEASKFVKIWAPFCKKYNVRVRAPFRYF-LNPLVATDDSVFSKDWKMMKRE 196          
BLAST of CK934499 vs. ExPASy Swiss-Prot
Match: CESA4_ARATH (Cellulose synthase A catalytic subunit 4 [UDP-forming] OS=Arabidopsis thaliana GN=CESA4 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.118e-29
Identity = 55/84 (65.48%), Postives = 67/84 (79.76%), Query Frame = 2
Query:  446 ELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF 697
            +L PVD+FV+T D   EPPIIT NT+LS+LAVDYPV+K++CYVSDD  S L F +L E S+FA+ WVPFCKKYNV+ RAP  YF
Sbjct:  290 KLAPVDVFVSTVDPLKEPPIITANTILSILAVDYPVNKVSCYVSDDGASMLLFDTLSETSEFARRWVPFCKKYNVEPRAPEFYF 373          

HSP 2 Score: 35.4242 bits (80), Expect = 1.118e-29
Identity = 15/38 (39.47%), Postives = 20/38 (52.63%), Query Frame = 3
Query:  213 WFLAFLCESCFTFIWILIVNCKWTPLTYKTYPQRLQER 326
            W ++ +CE  F   WIL    KW P+  +TY  RL  R
Sbjct:  244 WLISVICEIWFALSWILDQFPKWFPINRETYLDRLSMR 281          
BLAST of CK934499 vs. ExPASy Swiss-Prot
Match: CSLH2_ORYSJ (Cellulose synthase-like protein H2 OS=Oryza sativa subsp. japonica GN=CSLH2 PE=2 SV=3)

HSP 1 Score: 125.561 bits (314), Expect = 1.123e-29
Identity = 64/112 (57.14%), Postives = 76/112 (67.86%), Query Frame = 2
Query:  446 ELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPV--HKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYFXXXXXXXXXXXXXXQ---DWKNMKEE 766
            ELP VDM VTTAD  LEPP++TVNTVLSLLA+DYP    +LACYVSDD CSPL  ++L EA+ FA  WVPFC++Y V +RAPFRYF              +   DW  MK+E
Sbjct:  133 ELPAVDMLVTTADPALEPPLVTVNTVLSLLALDYPRAGERLACYVSDDGCSPLTCHALREAAGFAAAWVPFCRRYGVAVRAPFRYFSSSSSPESGGPADRKFLDDWTFMKDE 244          

HSP 2 Score: 25.7942 bits (55), Expect = 1.123e-29
Identity = 13/24 (54.17%), Postives = 14/24 (58.33%), Query Frame = 1
Query:  745 LEKHEGG--MTVFSNTERMNHPTI 810
            L +H GG     F N ER NHPTI
Sbjct:  260 LLRHGGGEFFAEFLNVERRNHPTI 283          
BLAST of CK934499 vs. ExPASy Swiss-Prot
Match: CSLH2_ORYSI (Cellulose synthase-like protein H2 OS=Oryza sativa subsp. indica GN=CSLH2 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.123e-29
Identity = 64/112 (57.14%), Postives = 76/112 (67.86%), Query Frame = 2
Query:  446 ELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPV--HKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYFXXXXXXXXXXXXXXQ---DWKNMKEE 766
            ELP VDM VTTAD  LEPP++TVNTVLSLLA+DYP    +LACYVSDD CSPL  ++L EA+ FA  WVPFC++Y V +RAPFRYF              +   DW  MK+E
Sbjct:  133 ELPAVDMLVTTADPALEPPLVTVNTVLSLLALDYPRAGERLACYVSDDGCSPLTCHALREAAGFAAAWVPFCRRYGVAVRAPFRYFSSSSSPESGGPADRKFLDDWTFMKDE 244          

HSP 2 Score: 25.7942 bits (55), Expect = 1.123e-29
Identity = 13/24 (54.17%), Postives = 14/24 (58.33%), Query Frame = 1
Query:  745 LEKHEGG--MTVFSNTERMNHPTI 810
            L +H GG     F N ER NHPTI
Sbjct:  260 LLRHGGGEFFAEFLNVERRNHPTI 283          
The following BLAST results are available for this feature:
BLAST of CK934499 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CSLB4_ARATH6.893e-5365.45Cellulose synthase-like protein B4 OS=Arabidopsis ... [more]
CSLB3_ARATH6.780e-5073.56Cellulose synthase-like protein B3 OS=Arabidopsis ... [more]
CSLB6_ARATH9.593e-4964.55Cellulose synthase-like protein B6 OS=Arabidopsis ... [more]
CSLB2_ARATH3.608e-4862.73Cellulose synthase-like protein B2 OS=Arabidopsis ... [more]
CSLB1_ARATH6.503e-4460.91Cellulose synthase-like protein B1 OS=Arabidopsis ... [more]
CSLH1_ORYSJ4.864e-4160.71Cellulose synthase-like protein H1 OS=Oryza sativa... [more]
CSLB5_ARATH1.067e-3452.41Cellulose synthase-like protein B5 OS=Arabidopsis ... [more]
CESA4_ARATH1.118e-2965.48Cellulose synthase A catalytic subunit 4 [UDP-form... [more]
CSLH2_ORYSJ1.123e-2957.14Cellulose synthase-like protein H2 OS=Oryza sativa... [more]
CSLH2_ORYSI1.123e-2957.14Cellulose synthase-like protein H2 OS=Oryza sativa... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004258_D07 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IF_D07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934499 ID=CK934499; Name=CK934499; organism=Citrus sinensis; type=EST; length=810bp
GGGACATCTATTAATGCCGAAACACCAAAAATAAAAAAAACGAGTACTTG
TTTTTCAAGCTCATGGCCAATACAAAGTCGTCATGTCTCCCTCTATACGA
AAAAGTTTTTCATAAAAACACATATCATAGGGCTTTAGATGTTATCATCT
TGTTCCTTCTTCTATGTCTGCTCTTCTATCGGCTCTCAACGTTGAAGAAT
CATGGATTTGCTTGGTTTCTTGCTTTTCTATGTGAGTCTTGTTTTACTTT
CATCTGGATTCTCATCGTCAACTGCAAGTGGACTCCTTTGACCTACAAAA
CATATCCCCAACGTCTCCAAGAAAGGTAACAAATCAAATAACGTTAGCAT
TAATAATTTCCGCATCATTTGCAATTGTCTTTGTCATTTTGCAAGTTACT
ACACACACACACACACACACATGTGTACGACTCAACAGGATACAGGAGCT
GCCCCCAGTGGACATGTTTGTGACAACTGCTGATGCTGAACTCGAGCCGC
CAATCATCACTGTAAACACAGTGCTGTCTTTGTTGGCAGTTGATTATCCA
GTTCACAAGCTCGCTTGCTATGTTTCTGATGATGCCTGCTCACCTCTCAA
TTTCTACTCTCTTGTTGAAGCTTCTAAATTCGCTAAGCTTTGGGTTCCAT
TCTGTAAAAAGTATAATGTTCAAATTAGAGCTCCCTTTAGATACTTCCCA
GATAGTGAGCCGTCCGATTCCAGTTCAGGGGAACTCCTGCAAGACTGGAA
AAACATGAAGGAGGAATGACTGTTTTCTCCAATACAGAACGCATGAATCA
TCCAACAATA
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