CK934547

Overview
NameCK934547
Unique NameCK934547
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length311
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13322 contig Csv1_Contig13322:225..535. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934547 vs. ExPASy Swiss-Prot
Match: TIP21_ARATH (Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1 PE=1 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 5.127e-28
Identity = 62/103 (60.19%), Postives = 70/103 (67.96%), Query Frame = 1
Query:    1 AALDPSGLVALAICHXXXXXXXXXXXXNISGGPVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLGAPTHNXXXXXXXXXXXXMDIIITF 309
            AALD  GLVA+A+CH            NISGG VNPAVTFGLA+GGQIT++TG+FYWIAQLLGS  A FLLK VTGGL  PTH+            M+IIITF
Sbjct:   49 AALDTPGLVAIAVCHGFALFVAVAIGANISGGHVNPAVTFGLAVGGQITVITGVFYWIAQLLGSTAACFLLKYVTGGLAVPTHSVAAGLGSIEGVVMEIIITF 151          
BLAST of CK934547 vs. ExPASy Swiss-Prot
Match: TIP2_TOBAC (Probable aquaporin TIP-type RB7-18C OS=Nicotiana tabacum PE=2 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 2.382e-25
Identity = 60/103 (58.25%), Postives = 66/103 (64.08%), Query Frame = 1
Query:    1 AALDPSGLVALAICHXXXXXXXXXXXXNISGGPVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLGAPTHNXXXXXXXXXXXXMDIIITF 309
            AALDP+GLVA+A+ H            NISGG +NPAVT GLA+GG ITILTG FYWIAQLLGS VA  LLK VT GL  PTH             M+IIITF
Sbjct:   49 AALDPAGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTLGLAVGGNITILTGFFYWIAQLLGSTVACLLLKYVTNGLAVPTHGVAAGLNGFQGVVMEIIITF 151          
BLAST of CK934547 vs. ExPASy Swiss-Prot
Match: TIP1_TOBAC (Probable aquaporin TIP-type RB7-5A OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.382e-25
Identity = 60/103 (58.25%), Postives = 66/103 (64.08%), Query Frame = 1
Query:    1 AALDPSGLVALAICHXXXXXXXXXXXXNISGGPVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLGAPTHNXXXXXXXXXXXXMDIIITF 309
            AALDP+GLVA+A+ H            NISGG +NPAVT GLA+GG ITILTG FYWIAQLLGS VA  LLK VT GL  PTH             M+IIITF
Sbjct:   49 AALDPAGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTLGLAVGGNITILTGFFYWIAQLLGSTVACLLLKYVTNGLAVPTHGVAAGLNGLQGVVMEIIITF 151          
BLAST of CK934547 vs. ExPASy Swiss-Prot
Match: TIP_ANTMA (Probable aquaporin TIP-type OS=Antirrhinum majus GN=DIP PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 6.930e-25
Identity = 58/103 (56.31%), Postives = 66/103 (64.08%), Query Frame = 1
Query:    1 AALDPSGLVALAICHXXXXXXXXXXXXNISGGPVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLGAPTHNXXXXXXXXXXXXMDIIITF 309
            AALDP+GLVA+A+ H            N+SGG +NPAVT GLA+GG ITILTG+FYWIAQ LGS VA  LLK VT GL  PTH             M+IIITF
Sbjct:   49 AALDPAGLVAVAVAHAFALFVGVSMAANVSGGHLNPAVTLGLAVGGNITILTGLFYWIAQCLGSTVACLLLKFVTNGLSVPTHGVAAGMDAIQGVVMEIIITF 151          
BLAST of CK934547 vs. ExPASy Swiss-Prot
Match: TIP22_ORYSJ (Probable aquaporin TIP2-2 OS=Oryza sativa subsp. japonica GN=TIP2-2 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.707e-23
Identity = 58/103 (56.31%), Postives = 69/103 (66.99%), Query Frame = 1
Query:    1 AALDPSGLVALAICHXXXXXXXXXXXXNISGGPVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLGAPTHNXXXXXXXXXXXXMDIIITF 309
            A LDP+GLVA+A+CH            NISGG VNPAVTFGLALGGQITILTG+FYWIAQLLG+IV + L++  T G+  PTH             M+II+TF
Sbjct:   50 APLDPAGLVAVAVCHGFGLFVAVAIGANISGGHVNPAVTFGLALGGQITILTGVFYWIAQLLGAIVGAVLVQFCT-GVATPTHG-LSGVGAFEGVVMEIIVTF 150          
BLAST of CK934547 vs. ExPASy Swiss-Prot
Match: TIP22_ARATH (Probable aquaporin TIP2-2 OS=Arabidopsis thaliana GN=TIP2-2 PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 3.802e-23
Identity = 54/103 (52.43%), Postives = 64/103 (62.14%), Query Frame = 1
Query:    1 AALDPSGLVALAICHXXXXXXXXXXXXNISGGPVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLGAPTHNXXXXXXXXXXXXMDIIITF 309
            AALDP+GLVA+A+ H            NISGG +NPAVT GLA+GG IT++TG FYWIAQ LGSIVA  LL  VT G   PTH             M+I++TF
Sbjct:   49 AALDPAGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTLGLAVGGNITVITGFFYWIAQCLGSIVACLLLVFVTNGESVPTHGVAAGLGAIEGVVMEIVVTF 151          
BLAST of CK934547 vs. ExPASy Swiss-Prot
Match: TIP23_ARATH (Aquaporin TIP2-3 OS=Arabidopsis thaliana GN=TIP2-3 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.966e-23
Identity = 54/102 (52.94%), Postives = 63/102 (61.76%), Query Frame = 1
Query:    4 ALDPSGLVALAICHXXXXXXXXXXXXNISGGPVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLGAPTHNXXXXXXXXXXXXMDIIITF 309
            ALDP+GLVA+AI H            NISGG +NPAVT GLA+GG IT++TG FYWIAQ LGSIVA  LL  VT G   PTH             M+I++TF
Sbjct:   50 ALDPAGLVAIAIAHAFALFVGVSIAANISGGHLNPAVTLGLAIGGNITLITGFFYWIAQCLGSIVACLLLVFVTNGKSVPTHGVSAGLGAVEGVVMEIVVTF 151          
BLAST of CK934547 vs. ExPASy Swiss-Prot
Match: TIP21_ORYSJ (Probable aquaporin TIP2-1 OS=Oryza sativa subsp. japonica GN=TIP2-1 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.966e-23
Identity = 57/102 (55.88%), Postives = 66/102 (64.71%), Query Frame = 1
Query:    4 ALDPSGLVALAICHXXXXXXXXXXXXNISGGPVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLGAPTHNXXXXXXXXXXXXMDIIITF 309
            ALDP+GLVA+AI H            NISGG +NPAVTFGLA+GG ITILTG+FYWIAQLLG+ +A  LLK VT G   PTH             M+I+ITF
Sbjct:   50 ALDPAGLVAIAIAHALALFVGVSVAANISGGHLNPAVTFGLAVGGHITILTGLFYWIAQLLGASIACLLLKFVTHGKAIPTHG-VAGISELEGVVMEIVITF 150          
BLAST of CK934547 vs. ExPASy Swiss-Prot
Match: TIP23_MAIZE (Aquaporin TIP2-3 OS=Zea mays GN=TIP2-3 PE=2 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 8.471e-23
Identity = 57/102 (55.88%), Postives = 66/102 (64.71%), Query Frame = 1
Query:    4 ALDPSGLVALAICHXXXXXXXXXXXXNISGGPVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLGAPTHNXXXXXXXXXXXXMDIIITF 309
            ALDP+GLVA+AI H            NISGG +NPAVTFGLA+GG ITILTGI YW+AQLLG+ VA FLL+ VT G   PTH             M+I+ITF
Sbjct:   50 ALDPAGLVAIAIAHAFALFVGVSMAANISGGHLNPAVTFGLAVGGHITILTGILYWVAQLLGASVACFLLQYVTHGQAIPTHG-VSGISEIEGVVMEIVITF 150          
BLAST of CK934547 vs. ExPASy Swiss-Prot
Match: TIP22_MAIZE (Aquaporin TIP2-2 OS=Zea mays GN=TIP2-2 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.445e-22
Identity = 52/102 (50.98%), Postives = 64/102 (62.75%), Query Frame = 1
Query:    4 ALDPSGLVALAICHXXXXXXXXXXXXNISGGPVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLGAPTHNXXXXXXXXXXXXMDIIITF 309
            ALDP+GLVA+A+ H            N SGG +NPAVTFGLA+GG IT+LTG+FYW+AQLLG+ VA  LL+ VT G   PTH              +I+ITF
Sbjct:   50 ALDPAGLVAIAVAHALALFVGVSVAANTSGGHLNPAVTFGLAVGGHITVLTGLFYWVAQLLGASVACLLLRFVTHGKAIPTHGVSGGTTELEGVVFEIVITF 151          
The following BLAST results are available for this feature:
BLAST of CK934547 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
TIP21_ARATH5.127e-2860.19Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1... [more]
TIP2_TOBAC2.382e-2558.25Probable aquaporin TIP-type RB7-18C OS=Nicotiana t... [more]
TIP1_TOBAC2.382e-2558.25Probable aquaporin TIP-type RB7-5A OS=Nicotiana ta... [more]
TIP_ANTMA6.930e-2556.31Probable aquaporin TIP-type OS=Antirrhinum majus G... [more]
TIP22_ORYSJ1.707e-2356.31Probable aquaporin TIP2-2 OS=Oryza sativa subsp. j... [more]
TIP22_ARATH3.802e-2352.43Probable aquaporin TIP2-2 OS=Arabidopsis thaliana ... [more]
TIP23_ARATH4.966e-2352.94Aquaporin TIP2-3 OS=Arabidopsis thaliana GN=TIP2-3... [more]
TIP21_ORYSJ4.966e-2355.88Probable aquaporin TIP2-1 OS=Oryza sativa subsp. j... [more]
TIP23_MAIZE8.471e-2355.88Aquaporin TIP2-3 OS=Zea mays GN=TIP2-3 PE=2 SV=2[more]
TIP22_MAIZE1.445e-2250.98Aquaporin TIP2-2 OS=Zea mays GN=TIP2-2 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCGF1004229_H08 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IVF_H08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934547 ID=CK934547; Name=CK934547; organism=Citrus sinensis; type=EST; length=311bp
GCAGCACTTGATCCATCAGGGCTAGTAGCCCTAGCTATTTGCCATGGATT
TGCTCTATTTGTCGCTGTTGCAGTTGGTGCTAACATCTCAGGTGGCCCCG
TCAACCCAGCCGTCACCTTTGGATTGGCTCTTGGTGGCCAAATCACCATC
CTCACTGGCATCTTCTACTGGATTGCCCAACTTCTTGGCTCTATTGTTGC
CAGCTTCCTCCTCAAAGTTGTCACTGGAGGATTGGGAGCTCCTACCCACA
ATGTTGCTGCTGGAGTTGGAGCCATTGAAGGAGTTGTGATGGACATCATC
ATCACATTTGG
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