CK934548

Overview
NameCK934548
Unique NameCK934548
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length592
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6651 contig Csv1_Contig6651:86..679. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934548 vs. ExPASy Swiss-Prot
Match: PPA1_SOLLC (Acid phosphatase 1 OS=Solanum lycopersicum GN=APS1 PE=2 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 1.024e-19
Identity = 25/58 (43.10%), Postives = 41/58 (70.69%), Query Frame = 1
Query:  370 EAILHAQSLTLAGDGKDIWVFNIDETSLCNLPYYAKNGFGVKPHNPTMFNEWVNTGKA 543
            EA  +A+S+ L  DG+D+W+F++DET L NLPYY+ + +G++  +   F++WV  G A
Sbjct:   88 EAGEYAKSVDLGDDGRDVWIFDVDETLLSNLPYYSDHRYGLEVFDDVEFDKWVENGTA 145          

HSP 2 Score: 54.299 bits (129), Expect = 1.024e-19
Identity = 21/46 (45.65%), Postives = 32/46 (69.57%), Query Frame = 3
Query:  231 LSCLSWPLGVETNNVIGWATVPEKCADYLGHYMLGQQYRLDSEVVA 368
            L C +W   VETNN+  W T+PE+CADY+  YM+G  Y+++ + V+
Sbjct:   41 LKCTTWRFVVETNNLSPWKTIPEECADYVKEYMVGPGYKMEIDRVS 86          
BLAST of CK934548 vs. ExPASy Swiss-Prot
Match: S25K_SOYBN (Stem 31 kDa glycoprotein (Fragment) OS=Glycine max GN=VSP25 PE=2 SV=2)

HSP 1 Score: 58.151 bits (139), Expect = 2.389e-18
Identity = 24/43 (55.81%), Postives = 33/43 (76.74%), Query Frame = 1
Query:  415 KDIWVFNIDETSLCNLPYYAKNGFGVKPHNPTMFNEWVNTGKA 543
            KD +VF+ID T L N+PYY K+G+GV+  N T+++EWVN G A
Sbjct:   97 KDTFVFSIDGTVLSNIPYYKKHGYGVEKFNSTLYDEWVNKGNA 139          

HSP 2 Score: 53.1434 bits (126), Expect = 2.389e-18
Identity = 21/47 (44.68%), Postives = 31/47 (65.96%), Query Frame = 3
Query:  225 PGLSCLSWPLGVETNNVIGWATVPEKCADYLGHYMLGQQYRLDSEVV 365
            P + C SW L VE +N+ G+ T+PE+C +    Y+ G+QYR DS+ V
Sbjct:   35 PEVKCASWRLAVEAHNIFGFETIPEECVEATKEYIHGEQYRSDSKTV 81          
BLAST of CK934548 vs. ExPASy Swiss-Prot
Match: VSPA_SOYBN (Stem 28 kDa glycoprotein OS=Glycine max GN=VSPA PE=2 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 2.397e-18
Identity = 24/43 (55.81%), Postives = 33/43 (76.74%), Query Frame = 1
Query:  415 KDIWVFNIDETSLCNLPYYAKNGFGVKPHNPTMFNEWVNTGKA 543
            KD +VF+ID T L N+PYY K+G+GV+  N T+++EWVN G A
Sbjct:  100 KDTFVFSIDGTVLSNIPYYKKHGYGVEKFNSTLYDEWVNKGNA 142          

HSP 2 Score: 53.1434 bits (126), Expect = 2.397e-18
Identity = 21/47 (44.68%), Postives = 31/47 (65.96%), Query Frame = 3
Query:  225 PGLSCLSWPLGVETNNVIGWATVPEKCADYLGHYMLGQQYRLDSEVV 365
            P + C SW L VE +N+ G+ T+PE+C +    Y+ G+QYR DS+ V
Sbjct:   38 PEVKCASWRLAVEAHNIFGFETIPEECVEATKEYIHGEQYRSDSKTV 84          
BLAST of CK934548 vs. ExPASy Swiss-Prot
Match: VSP2_ARATH (Vegetative storage protein 2 OS=Arabidopsis thaliana GN=VSP2 PE=1 SV=1)

HSP 1 Score: 55.8398 bits (133), Expect = 9.442e-17
Identity = 22/56 (39.29%), Postives = 37/56 (66.07%), Query Frame = 1
Query:  370 EAILHAQSLTLAGDGKDIWVFNIDETSLCNLPYYAKNGFGVKPHNPTMFNEWVNTG 537
            EA  +A+ L L  D  ++W+F++D+T L ++PYYAK G+G +  +P  +  W+ TG
Sbjct:   98 EAYFYAKGLALKNDTVNVWIFDLDDTLLSSIPYYAKYGYGTEKTDPGAYWLWLGTG 153          

HSP 2 Score: 50.0618 bits (118), Expect = 9.442e-17
Identity = 22/45 (48.89%), Postives = 32/45 (71.11%), Query Frame = 3
Query:  234 SCLSWPLGVETNNVIGWATVPEKCADYLGHYML-GQQYRLDSEVV 365
            +C SW LGVET+N+I + TVP  C DY+  Y++  +QY+ DS+ V
Sbjct:   51 NCRSWHLGVETSNIIDFDTVPANCKDYVEDYLITSKQYQYDSKTV 95          
BLAST of CK934548 vs. ExPASy Swiss-Prot
Match: VSP1_ARATH (Vegetative storage protein 1 OS=Arabidopsis thaliana GN=VSP1 PE=2 SV=2)

HSP 1 Score: 54.6842 bits (130), Expect = 1.300e-15
Identity = 21/58 (36.21%), Postives = 38/58 (65.52%), Query Frame = 1
Query:  370 EAILHAQSLTLAGDGKDIWVFNIDETSLCNLPYYAKNGFGVKPHNPTMFNEWVNTGKA 543
            EA  +A+ L L  D  ++W+F++D+T L ++PYYAK G+G +   P  +  W+ +G++
Sbjct:  103 EAYFYAKGLALKNDTVNVWIFDLDDTLLSSIPYYAKYGYGTENTAPGAYWSWLESGES 160          

HSP 2 Score: 47.3654 bits (111), Expect = 1.300e-15
Identity = 21/45 (46.67%), Postives = 31/45 (68.89%), Query Frame = 3
Query:  234 SCLSWPLGVETNNVIGWATVPEKCADYLGHYML-GQQYRLDSEVV 365
            +C SW LGVET+N+I + TVP  C  Y+  Y++  +QY+ DS+ V
Sbjct:   56 NCRSWHLGVETSNIINFDTVPANCKAYVEDYLITSKQYQYDSKTV 100          
BLAST of CK934548 vs. ExPASy Swiss-Prot
Match: VSPB_SOYBN (Stem 31 kDa glycoprotein OS=Glycine max GN=VSPB PE=2 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 2.857e-15
Identity = 23/42 (54.76%), Postives = 32/42 (76.19%), Query Frame = 1
Query:  418 DIWVFNIDETSLCNLPYYAKNGFGVKPHNPTMFNEWVNTGKA 543
            DI++F ID T L N+PYY K+G+GV+  N T+++EWVN G A
Sbjct:  102 DIFIFGIDNTVLSNIPYYEKHGYGVEEFNETLYDEWVNKGDA 143          

HSP 2 Score: 43.1282 bits (100), Expect = 2.857e-15
Identity = 20/54 (37.04%), Postives = 34/54 (62.96%), Query Frame = 3
Query:  204 GSRNNDVPGLSCLSWPLGVETNNVIGWATVPEKCADYLGHYMLGQQYRLDSEVV 365
            G R+++V    C S+ L VE +N+  + T+PE+C +    Y+ G+Q+R DS+ V
Sbjct:   35 GERSSEV---KCASFRLAVEAHNIRAFKTIPEECVEPTKDYINGEQFRSDSKTV 85          
The following BLAST results are available for this feature:
BLAST of CK934548 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PPA1_SOLLC1.024e-1943.10Acid phosphatase 1 OS=Solanum lycopersicum GN=APS1... [more]
S25K_SOYBN2.389e-1855.81Stem 31 kDa glycoprotein (Fragment) OS=Glycine max... [more]
VSPA_SOYBN2.397e-1855.81Stem 28 kDa glycoprotein OS=Glycine max GN=VSPA PE... [more]
VSP2_ARATH9.442e-1739.29Vegetative storage protein 2 OS=Arabidopsis thalia... [more]
VSP1_ARATH1.300e-1536.21Vegetative storage protein 1 OS=Arabidopsis thalia... [more]
VSPB_SOYBN2.857e-1554.76Stem 31 kDa glycoprotein OS=Glycine max GN=VSPB PE... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004229_H09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IVF_H09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934548 ID=CK934548; Name=CK934548; organism=Citrus sinensis; type=EST; length=592bp
GGAGGAAAAACAATATTACAGTTGTAATGAGCATGGGAGGGGTGTCACTG
CCATTATTATTCTTTTTTCTGGCTACCATATCAGCAACATCCCATGGATT
TAGCATGGACATCCGCCATCTTTTTCTGGCTACCATACCAGCAACCTCCC
ATGGATTTACCATGGACATCCCCCATCAGATTCATCTTCTCCGACCGAAA
GCCGGTTCCCGGAACAACGATGTGCCCGGCTTGTCCTGCCTGAGTTGGCC
ACTCGGAGTGGAAACTAATAACGTTATAGGATGGGCGACTGTTCCCGAAA
AATGTGCAGACTACTTGGGGCATTACATGTTAGGCCAGCAGTACCGCCTG
GACTCTGAAGTGGTTGCTTGAGGCCATTCTCCATGCTCAGAGCCTCACGC
TTGCTGGCGACGGCAAGGACATTTGGGTTTTCAACATAGATGAAACCTCG
CTATGTAATTTGCCATATTATGCTAAGAATGGATTCGGGGTGAAGCCGCA
CAACCCTACTATGTTTAATGAATGGGTTAACACCGGAAAAGCACCACCGC
TGCCAGAGAGCCTTAAGCTTTACAAAAAATTATTATTGCTTG
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