CK934575

Overview
NameCK934575
Unique NameCK934575
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length847
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6217 contig Csv1_Contig6217:2..838. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934575 vs. ExPASy Swiss-Prot
Match: MURC_FRASC (UDP-N-acetylmuramate--L-alanine ligase OS=Frankia sp. (strain CcI3) GN=murC PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.441e-25
Identity = 55/103 (53.40%), Postives = 74/103 (71.84%), Query Frame = 1
Query:  301 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGD 609
            KSTT++ML  VL+A G D TA++GA V Q   G+   G G  FVLE+DEY G F GL PS+AV+TN++WEH D+F DE +V++ F  F +++R GG LV+CGD
Sbjct:  123 KSTTSAMLTLVLRAAGLDPTAVIGAEVSQL-GGNALAGSGDVFVLESDEYGGAFAGLDPSIAVITNVEWEHPDVFPDEASVRTAFAAFARRVRPGGRLVVCGD 224          

HSP 2 Score: 20.7866 bits (42), Expect = 1.441e-25
Identity = 8/21 (38.10%), Postives = 11/21 (52.38%), Query Frame = 2
Query:  725 HDYKIITYGFSSFNDWYAESV 787
            +D  +I YGF +   W A  V
Sbjct:  247 NDVAVIDYGFGAERHWRAVDV 267          
BLAST of CK934575 vs. ExPASy Swiss-Prot
Match: MURC_FRAAA (UDP-N-acetylmuramate--L-alanine ligase OS=Frankia alni (strain ACN14a) GN=murC PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.694e-25
Identity = 55/103 (53.40%), Postives = 74/103 (71.84%), Query Frame = 1
Query:  301 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGD 609
            KSTT++ML  VL+A G D TA++GA V Q   G+   G G  FVLE+DEY G F GL P++AV+TN++WEH DIF DE +V++ F  F +++R GG LV+CGD
Sbjct:  123 KSTTSAMLTLVLRAAGLDPTAVIGAEVSQL-GGNALAGSGDLFVLESDEYGGAFAGLEPTIAVITNVEWEHPDIFPDEASVRTAFTAFARRVRPGGRLVVCGD 224          
BLAST of CK934575 vs. ExPASy Swiss-Prot
Match: MURC_ROSCS (UDP-N-acetylmuramate--L-alanine ligase OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=murC PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.466e-15
Identity = 42/124 (33.87%), Postives = 68/124 (54.84%), Query Frame = 1
Query:  301 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDR*AQSRCTVLAGSNKTRYWIE 672
            K+TT +++A +L   G     ++G   P     + +       V+EADEYD  FL L+P +A++TN++WEHVDI+   D  ++ FR F +Q+     L++CGD     R  V+   +  +Y IE
Sbjct:  111 KTTTTALIALMLTRAGIAPGFLIGGETPDLGVNARWGNPAAPLVVEADEYDRTFLALTPDIAIITNVEWEHVDIYPSPDEYEAAFRTFARQVAHPQRLIVCGDNAGARR--VVGHPDAQQYGIE 232          
BLAST of CK934575 vs. ExPASy Swiss-Prot
Match: MURC_MYXXD (UDP-N-acetylmuramate--L-alanine ligase OS=Myxococcus xanthus (strain DK 1622) GN=murC PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.526e-15
Identity = 54/145 (37.24%), Postives = 76/145 (52.41%), Query Frame = 1
Query:  301 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDR--------*AQSRCTVLAGSNKTRYWIEVFWWSGF*SKFRS 711
            K+TT SM+A VL A G D TA+VG  V    D +   G  +  V+EADE DG FL L PS+A+VTN+D EH+D + D D ++S F  F  ++   G  V+C D           + R      S+   Y +E     GF ++F +
Sbjct:  126 KTTTTSMVATVLSAAGLDPTAVVGGKVNVL-DSNAKLGKSELMVVEADESDGSFLHLHPSIAIVTNIDPEHMDHYGDLDTLQSAFVEFCNRVPFYGLNVLCLDNPNVQALLPRIEKRFVTYGSSHMADYRLENIQLDGFTTRFNA 269          
BLAST of CK934575 vs. ExPASy Swiss-Prot
Match: MURC_DESAA (UDP-N-acetylmuramate--L-alanine ligase OS=Desulfatibacillum alkenivorans (strain AK-01) GN=murC PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.720e-14
Identity = 45/103 (43.69%), Postives = 64/103 (62.14%), Query Frame = 1
Query:  301 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGD 609
            K+TT S++A VL A G D T ++G  +      +   G G+  V EADE DG FL +SPS+AVVTN+D EH+D ++D D +K  F +F+ +I   G  V+C D
Sbjct:  116 KTTTTSIVADVLAAGGLDPTVVIGGKLLSIGSNAKL-GHGEFIVAEADESDGSFLKMSPSIAVVTNIDREHMDHYKDMDEIKDAFAQFVDKIPFYGLSVLCLD 217          
BLAST of CK934575 vs. ExPASy Swiss-Prot
Match: MURC_THETN (UDP-N-acetylmuramate--L-alanine ligase OS=Thermoanaerobacter tengcongensis GN=murC PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.203e-14
Identity = 37/103 (35.92%), Postives = 58/103 (56.31%), Query Frame = 1
Query:  301 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGD 609
            K+TT S+++ +L   G D T +VG  +     G++  G  + FV EA EY   FL   P +AV+ N+D +H+D F++ D +K  FR+F   +   G +V C D
Sbjct:  120 KTTTTSLISVILDRAGYDPTVLVGGEIDAI-GGNVRVGKSEYFVTEACEYTDSFLKFYPYIAVILNVDSDHLDYFKNIDNIKQSFRQFASLVPSDGFVVACKD 221          

HSP 2 Score: 28.4906 bits (62), Expect = 2.203e-14
Identity = 11/40 (27.50%), Postives = 24/40 (60.00%), Query Frame = 2
Query:  719 QGHDYKIITYGFSSFNDWYAESVCPNVQGGSDYILCERGR 838
            +G +  I+TYG +  +DW A+ +  + +G + + +  RG+
Sbjct:  230 KGLEKNIVTYGINEKSDWQAKDITYDEKGCASFNVYYRGK 269          
BLAST of CK934575 vs. ExPASy Swiss-Prot
Match: MURC_MYCS2 (UDP-N-acetylmuramate--L-alanine ligase OS=Mycobacterium smegmatis GN=murC PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.246e-14
Identity = 43/103 (41.75%), Postives = 62/103 (60.19%), Query Frame = 1
Query:  301 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGD 609
            K+TT SML   L+  G D +  VG  + +    +  +G G  FV EADE DG  L  +P+VAVVTN++ +H+D F  E A  ++F  F+++I  GG LV+C D
Sbjct:  126 KTTTTSMLIVALQHSGFDPSFAVGGELGEAGTNA-HHGSGTTFVAEADESDGSLLEYTPNVAVVTNIEADHLDFFGSEQAYTAVFDSFVERIAPGGALVVCTD 227          
BLAST of CK934575 vs. ExPASy Swiss-Prot
Match: MURC_CORJK (UDP-N-acetylmuramate--L-alanine ligase OS=Corynebacterium jeikeium (strain K411) GN=murC PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.246e-14
Identity = 42/103 (40.78%), Postives = 62/103 (60.19%), Query Frame = 1
Query:  301 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGD 609
            K++T SM    L+A G D +  +G  + +    +   G G+ FV EADE DG FL  SP +AVVTN++ +H+D F+ E A + +F +F  +I  GG LV+C D
Sbjct:  126 KTSTTSMAVAALQAAGQDPSFAIGGQLNRAGTNA-HNGTGEVFVAEADESDGSFLSYSPEIAVVTNIEPDHLDYFKTESAYREVFEKFAHRIVPGGFLVVCLD 227          
BLAST of CK934575 vs. ExPASy Swiss-Prot
Match: MURC_SOLUE (UDP-N-acetylmuramate--L-alanine ligase OS=Solibacter usitatus (strain Ellin6076) GN=murC PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.934e-14
Identity = 41/103 (39.81%), Postives = 61/103 (59.22%), Query Frame = 1
Query:  301 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGD 609
            K+TT SM A +L   G D T +VG  V      +   G     V+E+DE DG FL L+P +AVVTN+D EH+D + D DA+++ F  F+ ++   G +++C D
Sbjct:  127 KTTTTSMAATILNYAGLDPTVVVGGRVGTMGGSNARVGHSDFLVVESDESDGSFLKLAPIIAVVTNVDREHLDHYPDLDAIRAAFLEFVNKVPFYGAVIVCLD 229          
BLAST of CK934575 vs. ExPASy Swiss-Prot
Match: MURC_ROSS1 (UDP-N-acetylmuramate--L-alanine ligase OS=Roseiflexus sp. (strain RS-1) GN=murC PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.934e-14
Identity = 37/103 (35.92%), Postives = 61/103 (59.22%), Query Frame = 1
Query:  301 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGD 609
            K+TT +++A +L   G +   ++G   P     + +       V+EADEYD  FL L+P VAV+TN++W+HVDI+   D  ++ FR F +++     L++CGD
Sbjct:  111 KTTTTALIALMLTQAGGNPGFLIGGETPDLGIHARWGDPAAPLVVEADEYDRTFLALTPDVAVMTNVEWDHVDIYPSPDNYEAAFRLFTRRVAQPQRLIVCGD 213          
The following BLAST results are available for this feature:
BLAST of CK934575 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 163
Match NameE-valueIdentityDescription
MURC_FRASC1.441e-2553.40UDP-N-acetylmuramate--L-alanine ligase OS=Frankia ... [more]
MURC_FRAAA3.694e-2553.40UDP-N-acetylmuramate--L-alanine ligase OS=Frankia ... [more]
MURC_ROSCS3.466e-1533.87UDP-N-acetylmuramate--L-alanine ligase OS=Roseifle... [more]
MURC_MYXXD4.526e-1537.24UDP-N-acetylmuramate--L-alanine ligase OS=Myxococc... [more]
MURC_DESAA1.720e-1443.69UDP-N-acetylmuramate--L-alanine ligase OS=Desulfat... [more]
MURC_THETN2.203e-1435.92UDP-N-acetylmuramate--L-alanine ligase OS=Thermoan... [more]
MURC_MYCS22.246e-1441.75UDP-N-acetylmuramate--L-alanine ligase OS=Mycobact... [more]
MURC_CORJK2.246e-1440.78UDP-N-acetylmuramate--L-alanine ligase OS=Coryneba... [more]
MURC_SOLUE2.934e-1439.81UDP-N-acetylmuramate--L-alanine ligase OS=Solibact... [more]
MURC_ROSS12.934e-1435.92UDP-N-acetylmuramate--L-alanine ligase OS=Roseifle... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004229_D10 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IVF_D10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934575 ID=CK934575; Name=CK934575; organism=Citrus sinensis; type=EST; length=847bp
GGGGATGGGAAAATTGGTGGCATCAGTTTCCAACTCACTTCATTCTCCAG
GCAGCTTTCTGGAGAAAATTGAAACCTATTTTTTCGGAAACATTCCTCTC
TCGTTCAAATCTAATCGAACCGCACCTTCTATATTATTATTTATGAAGAA
GAAAAATAGCGTTTCAGTTTTAACAAATTGCACATTTAAAAGAAATGAAG
AATGCATTGTCGATTTCAAAAATCGAAAGGGGTGGATTCATTTCGTGGGA
ATTGGTGGTTCTGGGTTATCTGCACTCGCCAAGCTCGCTCTCAAACAAGG
AAGAGTACAACTGCAAGCATGCTTGCCTATGTTCTGAAGGCAATGGGGGA
TGATCTTACAGCTATAGTTGGAGCACATGTGCCACAGTTTCCAGACGGAA
GCATATTTTATGGAGGTGGCAAAAACTTTGTGCTGGAGGCTGATGAATAT
GATGGTTGCTTCCTGGGATTATCACCCTCTGTAGCTGTAGTGACAAATCT
GGATTGGGAGCATGTTGATATCTTTGAAGATGAGGATGCTGTTAAAAGTA
TTTTTAGGAGATTCCTGAAGCAGATCAGGGTGGGTGGACATCTTGTCATA
TGTGGGGACAGGTAAGCGCAGTCAAGGTGCACGGTCCTTGCTGGATCAAA
TAAAACAAGATACTGGATTGAAGTATTCTGGTGGAGTGGTTTCTAATCAA
AGTTCAGATCTATGGGGACAAGGGCATGATTACAAAATAATAACTTATGG
TTTTTCAAGTTTTAATGATTGGTACGCTGAATCCGTTTGTCCAAATGTAC
AGGGTGGTAGTGATTATATTTTGTGTGAGAGAGGGCGCCCATTGGCT
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