CK934580

Overview
NameCK934580
Unique NameCK934580
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length618
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4518 contig Csv1_Contig4518:99..717. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
[Close]
BLAST of CK934580 vs. ExPASy Swiss-Prot
Match: NU3C_CITSI (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Citrus sinensis GN=ndhC PE=3 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 3.924e-64
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 2 
Query:  206 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 565
            MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS
Sbjct:    1 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 120
[Close]
BLAST of CK934580 vs. ExPASy Swiss-Prot
Match: NU3C_GOSHI (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Gossypium hirsutum GN=ndhC PE=3 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 6.926e-61
Identity = 114/120 (95.00%), Postives = 116/120 (96.67%), Query Frame = 2 
Query:  206 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 565
            MFLLY+YDIFWAFLIISS IPILAFLIS VLAPI KGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIF+LILIVG VYAWRKGALEWS
Sbjct:    1 MFLLYEYDIFWAFLIISSAIPILAFLISGVLAPIRKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFVLILIVGSVYAWRKGALEWS 120
[Close]
BLAST of CK934580 vs. ExPASy Swiss-Prot
Match: NU3C_GOSBA (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Gossypium barbadense GN=ndhC PE=3 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 3.437e-60
Identity = 113/120 (94.17%), Postives = 115/120 (95.83%), Query Frame = 2 
Query:  206 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 565
            MFLLY+YDIFWAFLIISS IPILAFLIS VLAPI KGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVV DVETVFLYPWAMSFDVLGVPVFIEAFIF+LILIVG VYAWRKGALEWS
Sbjct:    1 MFLLYEYDIFWAFLIISSAIPILAFLISGVLAPIRKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVLDVETVFLYPWAMSFDVLGVPVFIEAFIFVLILIVGSVYAWRKGALEWS 120
[Close]
BLAST of CK934580 vs. ExPASy Swiss-Prot
Match: NU3C_LUPLU (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Lupinus luteus GN=ndhC PE=3 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 4.489e-60
Identity = 112/120 (93.33%), Postives = 117/120 (97.50%), Query Frame = 2 
Query:  206 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 565
            MFLLY+YDIFWAFLIISS+IPILAFLIS +LAPI+KGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGV VFIEA IF+LILIVGLVYAWRKGALEWS
Sbjct:    1 MFLLYEYDIFWAFLIISSLIPILAFLISGILAPISKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEALIFVLILIVGLVYAWRKGALEWS 120
[Close]
BLAST of CK934580 vs. ExPASy Swiss-Prot
Match: NU3C_RANMC (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Ranunculus macranthus GN=ndhC PE=3 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 5.863e-60
Identity = 112/120 (93.33%), Postives = 117/120 (97.50%), Query Frame = 2 
Query:  206 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 565
            MFLL++YDIFWAFLIISSVIPILAFLIS VLAPIN+GPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGV VF+EA IF+LILIVGLVYAWRKGALEWS
Sbjct:    1 MFLLHEYDIFWAFLIISSVIPILAFLISGVLAPINEGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFVEALIFVLILIVGLVYAWRKGALEWS 120
[Close]
BLAST of CK934580 vs. ExPASy Swiss-Prot
Match: NU3C_CARPA (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Carica papaya GN=ndhC PE=3 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 5.863e-60
Identity = 113/120 (94.17%), Postives = 115/120 (95.83%), Query Frame = 2 
Query:  206 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 565
            MFLLY+YDIFWAFLIISS IPILAFLIS VLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGV VFIEA IF+LILIVG VYAWRKGALEWS
Sbjct:    1 MFLLYEYDIFWAFLIISSAIPILAFLISGVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEALIFVLILIVGSVYAWRKGALEWS 120
[Close]
BLAST of CK934580 vs. ExPASy Swiss-Prot
Match: NU3C_SPIOL (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Spinacia oleracea GN=ndhC PE=3 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 7.658e-60
Identity = 111/120 (92.50%), Postives = 116/120 (96.67%), Query Frame = 2 
Query:  206 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 565
            MFLLY+YDIFWAFLIISSVIPILAFL S +LAPI+KGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFD+LGV VFIEA IF+LILIVGLVYAWRKGALEWS
Sbjct:    1 MFLLYEYDIFWAFLIISSVIPILAFLFSGILAPISKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDILGVSVFIEALIFVLILIVGLVYAWRKGALEWS 120
[Close]
BLAST of CK934580 vs. ExPASy Swiss-Prot
Match: NU3C_EUCGG (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=ndhC PE=3 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 7.658e-60
Identity = 112/120 (93.33%), Postives = 116/120 (96.67%), Query Frame = 2 
Query:  206 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 565
            MFLLY+YDIFWAFLIISSVIPILAF IS +LAPI+KGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGV VFIEA IF+LILIVGLVYAWRKGALEWS
Sbjct:    1 MFLLYEYDIFWAFLIISSVIPILAFXISGILAPISKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEALIFVLILIVGLVYAWRKGALEWS 120
[Close]
BLAST of CK934580 vs. ExPASy Swiss-Prot
Match: NU3C_POPTR (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Populus trichocarpa GN=ndhC PE=3 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.000e-59
Identity = 112/120 (93.33%), Postives = 116/120 (96.67%), Query Frame = 2 
Query:  206 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 565
            MFLLY+YDIFWAFLIISSVIPILAFLIS +L+PI KGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGV VFIEA IF+LILIVGLVYAWRKGALEWS
Sbjct:    1 MFLLYEYDIFWAFLIISSVIPILAFLISGLLSPIRKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEALIFVLILIVGLVYAWRKGALEWS 120
[Close]
BLAST of CK934580 vs. ExPASy Swiss-Prot
Match: NU3C_POPAL (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Populus alba GN=ndhC PE=3 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.000e-59
Identity = 112/120 (93.33%), Postives = 116/120 (96.67%), Query Frame = 2 
Query:  206 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 565
            MFLLY+YDIFWAFLIISSVIPILAFLIS +L+PI KGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGV VFIEA IF+LILIVGLVYAWRKGALEWS
Sbjct:    1 MFLLYEYDIFWAFLIISSVIPILAFLISGLLSPIRKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEALIFVLILIVGLVYAWRKGALEWS 120
The following BLAST results are available for this feature:
BLAST of CK934580 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 441
Match NameE-valueIdentityDescription
NU3C_CITSI3.924e-64100.00NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_GOSHI6.926e-6195.00NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_GOSBA3.437e-6094.17NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_LUPLU4.489e-6093.33NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_RANMC5.863e-6093.33NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_CARPA5.863e-6094.17NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_SPIOL7.658e-6092.50NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_EUCGG7.658e-6093.33NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_POPTR1.000e-5993.33NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_POPAL1.000e-5993.33NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004229_C10 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IVF_C10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934580 ID=CK934580; Name=CK934580; organism=Citrus sinensis; type=EST; length=618bp
GGGAAATAAANNNGAAGGAAGTGTAATGAAANNNGGATTCCAATCGATAA
ATCTTAAAACGAGACATCACAACAAACAAACGAAACTTTGCGGTTCGATC
AAAATGAATTGTTGTTTTGATTAACCAATTATCGATGACTTGACAATGAA
TTCCAATTTGCATCGACAAATTTGGTCTATTTTCCACATTCATAGGAGTT
TGGCTATGTTTCTGCTTTACAAATATGATATTTTCTGGGCATTTCTAATA
ATATCAAGCGTTATTCCTATTTTGGCATTTCTAATTTCCGCAGTTTTAGC
CCCGATTAACAAAGGGCCAGAGAAACTTTCTAGTTATGAATCGGGTATCG
AACCAATGGGCGATGCTTGGTTACAATTTCGAATCCGGTATTATATGTTT
GCTCTAGTTTTTGTTGTTTTTGATGTTGAAACCGTTTTTCTTTATCCATG
GGCAATGAGTTTTGATGTATTGGGGGTACCCGTATTTATAGAAGCTTTCA
TTTTCATGCTTATCCTAATTGTTGGTTTAGTTTATGCGTGGCGAAAAGGA
GCATTAGAGTGGTCTTAGTTTCTGAATATTCAGACAATAACAAAAAAAAA
AAAAAAAAAAAAAAAAAA
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