CK934593

Overview
NameCK934593
Unique NameCK934593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length812
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934593 vs. ExPASy Swiss-Prot
Match: NDHM_VITVI (NAD(P)H-quinone oxidoreductase subunit M, chloroplastic OS=Vitis vinifera GN=ndhM PE=2 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 2.012e-57
Identity = 111/150 (74.00%), Postives = 121/150 (80.67%), Query Frame = 2
Query:  185 MATTSINMASAKFSMLGWIGGKRELKKKRVISISAQQQAEVEESRSKQVKENENQAQVKQQQTPL-RPVEPQTNVRSKNMSREYGGQWLSCATRHVRIYAAYIDPETWEFDQTQMDKLTLILDPTKEFVWTDESCNKVFAYFQELVDHYE 631
            MA TS   A  KFSMLGWIGGKREL+K+R   ISAQQQAEVEES+    +E E +   +Q +  L RPVEPQ NV+SKNMSREYGGQWLS  TRHVRIYAAYIDP T EFDQTQMDKLTLILDPT EFVWT E+CNKV+AYFQELVDHYE
Sbjct:    1 MAATSSYTACTKFSMLGWIGGKRELRKRRAFFISAQQQAEVEESQQVNAQEEEQEKMKQQGKQKLPRPVEPQVNVKSKNMSREYGGQWLSSVTRHVRIYAAYIDPVTCEFDQTQMDKLTLILDPTNEFVWTSETCNKVYAYFQELVDHYE 150          
BLAST of CK934593 vs. ExPASy Swiss-Prot
Match: NDHM_POPJC (NAD(P)H-quinone oxidoreductase subunit M, chloroplastic OS=Populus jackii GN=ndhM PE=2 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 3.795e-56
Identity = 109/149 (73.15%), Postives = 123/149 (82.55%), Query Frame = 2
Query:  185 MATTSINMASAKFSMLGWIGGKRELKKKRVISISAQQQAEVEESRSKQVKENENQAQVKQQQTPLRPVEPQTNVRSKNMSREYGGQWLSCATRHVRIYAAYIDPETWEFDQTQMDKLTLILDPTKEFVWTDESCNKVFAYFQELVDHYE 631
            MA +S  MA AKFSMLGW+GG+RELK +RVIS+S Q+QAEV+ES+    +E E   +VKQ   P RPVEPQ NV+SKNM REYGGQWLS  TRHVRIYAAYIDPET EFDQTQ DKLTLILDPT EFVWTDE+C KV++YFQELVDHYE
Sbjct:    1 MAASSSYMACAKFSMLGWLGGRRELKMRRVISVSPQEQAEVQESQEVNAQEEE---KVKQPVQP-RPVEPQVNVKSKNMGREYGGQWLSSVTRHVRIYAAYIDPETCEFDQTQTDKLTLILDPTDEFVWTDETCYKVYSYFQELVDHYE 145          
BLAST of CK934593 vs. ExPASy Swiss-Prot
Match: NDHM_ARATH (NAD(P)H-quinone oxidoreductase subunit M, chloroplastic OS=Arabidopsis thaliana GN=ndhM PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.310e-40
Identity = 78/123 (63.41%), Postives = 99/123 (80.49%), Query Frame = 2
Query:  263 KKRVISISAQQQAEVEESRSKQVKENENQAQVKQQQTPLRPVEPQTNVRSKNMSREYGGQWLSCATRHVRIYAAYIDPETWEFDQTQMDKLTLILDPTKEFVWTDESCNKVFAYFQELVDHYE 631
            +K  +  + +Q + +E   ++ +KE ++  ++K+Q TPLRPVE Q NV+SK M  ++GGQWLS  TRHVRIYAAYIDPET EFDQ+QMDKLTLILDPT+EFVW DESCNKV++YFQELVDHYE
Sbjct:   30 QKAFVVTNPEQDSTLEVQETETLKEEQSTEKMKKQPTPLRPVEKQLNVKSKGMG-DFGGQWLSSVTRHVRIYAAYIDPETCEFDQSQMDKLTLILDPTEEFVWDDESCNKVYSYFQELVDHYE 151          
BLAST of CK934593 vs. ExPASy Swiss-Prot
Match: NDHM_ORYSJ (NAD(P)H-quinone oxidoreductase subunit M, chloroplastic OS=Oryza sativa subsp. japonica GN=ndhM PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.693e-35
Identity = 69/114 (60.53%), Postives = 86/114 (75.44%), Query Frame = 2
Query:  290 QQQAEVEESRSKQVKENENQAQVKQQQTPLRPVEPQTNVRSKNMSREYGGQWLSCATRHVRIYAAYIDPETWEFDQTQMDKLTLILDPTKEFVWTDESCNKVFAYFQELVDHYE 631
            +++A VE       +E + + +  ++Q P +P+  Q    SKNMSREYGGQWLSC TRH+RIYAAYI+PET  FDQTQMDKLTL+LDPT EFVWTDE+C KV+  FQ+LVDHYE
Sbjct:   49 EEEAAVENLPPPPQEEEQRRERKTRRQGPAQPLPVQPLAESKNMSREYGGQWLSCTTRHIRIYAAYINPETNAFDQTQMDKLTLLLDPTDEFVWTDETCQKVYDEFQDLVDHYE 162          
BLAST of CK934593 vs. ExPASy Swiss-Prot
Match: NDHM_ORYSI (NAD(P)H-quinone oxidoreductase subunit M, chloroplastic OS=Oryza sativa subsp. indica GN=ndhM PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.693e-35
Identity = 69/114 (60.53%), Postives = 86/114 (75.44%), Query Frame = 2
Query:  290 QQQAEVEESRSKQVKENENQAQVKQQQTPLRPVEPQTNVRSKNMSREYGGQWLSCATRHVRIYAAYIDPETWEFDQTQMDKLTLILDPTKEFVWTDESCNKVFAYFQELVDHYE 631
            +++A VE       +E + + +  ++Q P +P+  Q    SKNMSREYGGQWLSC TRH+RIYAAYI+PET  FDQTQMDKLTL+LDPT EFVWTDE+C KV+  FQ+LVDHYE
Sbjct:   49 EEEAAVENLPPPPQEEEQRRERKTRRQGPAQPLPVQPLAESKNMSREYGGQWLSCTTRHIRIYAAYINPETNAFDQTQMDKLTLLLDPTDEFVWTDETCQKVYDEFQDLVDHYE 162          
BLAST of CK934593 vs. ExPASy Swiss-Prot
Match: NDHM_PHYPA (NAD(P)H-quinone oxidoreductase subunit M, chloroplastic OS=Physcomitrella patens GN=ndhM PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.779e-21
Identity = 47/84 (55.95%), Postives = 61/84 (72.62%), Query Frame = 2
Query:  377 LRPVEPQTNVRSKNMSREYGGQWLSCATRHVRIYAAYIDPETWEFDQTQMDKLTLILDPTKEFVWTDESCNKVFAYFQELVDHY 628
            +R  E +   ++K +SRE GGQWLSC TRHVRIYA Y+DPET   DQ+Q+DKLTL+LDP  EF W +E   KV+  ++ELV+ Y
Sbjct:   61 VRAEEVKEVTQAKGLSRESGGQWLSCTTRHVRIYAGYVDPETQVMDQSQLDKLTLMLDPDNEFEWPEEMVEKVYDKYRELVETY 144          
The following BLAST results are available for this feature:
BLAST of CK934593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
NDHM_VITVI2.012e-5774.00NAD(P)H-quinone oxidoreductase subunit M, chloropl... [more]
NDHM_POPJC3.795e-5673.15NAD(P)H-quinone oxidoreductase subunit M, chloropl... [more]
NDHM_ARATH1.310e-4063.41NAD(P)H-quinone oxidoreductase subunit M, chloropl... [more]
NDHM_ORYSJ3.693e-3560.53NAD(P)H-quinone oxidoreductase subunit M, chloropl... [more]
NDHM_ORYSI3.693e-3560.53NAD(P)H-quinone oxidoreductase subunit M, chloropl... [more]
NDHM_PHYPA1.779e-2155.95NAD(P)H-quinone oxidoreductase subunit M, chloropl... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004229_C05 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IVF_C05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934593 ID=CK934593; Name=CK934593; organism=Citrus sinensis; type=EST; length=812bp
GGGGGAACTAAATCAAAACAAAGGCAGCTTATCCATCTCCACACCACCGC
GCCCCCCCCCCCTTCTCCAAAAAAAAAGGAAAAAGAAAAGGATCCCAATT
CCGTTAGTCTTTTGCCAAAAACTCCTAAGACTCGGGTGCTGAAAAAGAGC
TGTCCCAAGCTAAGCTACAAACACAAGTTATAAAATGGCCACAACTTCCA
TTAACATGGCTTCTGCAAAATTCTCAATGTTGGGATGGATTGGAGGGAAA
AGAGAGCTGAAAAAGAAAAGGGTAATATCGATTTCAGCTCAGCAACAAGC
TGAAGTTGAAGAGTCACGCTCAAAGCAAGTGAAGGAGAATGAAAACCAAG
CTCAGGTGAAGCAGCAGCAGACACCGTTGAGGCCAGTGGAGCCGCAGACA
AATGTAAGGAGCAAAAATATGAGCAGAGAATATGGAGGGCAGTGGCTGAG
CTGTGCCACGAGACATGTGAGGATTTACGCCGCATATATTGATCCTGAAA
CCTGGGAATTTGATCAAACACAGATGGATAAGCTCACTCTTATTTTGGAT
CCTACTAAAGAATTTGTGTGGACTGATGAGAGTTGCAATAAGGTTTTTGC
TTATTTCCAGGAGCTTGTTGATCACTATGAGGTATTATTCATATAAACTA
ATGAAATCCTATTATTCTACCATTGTCTGAGAAATAGGAAATCAGCTGAG
GCTGATTAGTTCTATATAAAATTAGAGCTGAAAAGAAACCAAATGAATCT
AAAGCCAAAATCACATATAATTTGTGATTCTGTTTCTTGAAACAACTATA
CGTATTGTATCT
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